Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00117 ATGGGGGAAGAAGATTCCGTGGGTGCGTCTCAGAAGAAGGCTCAATCAGATGGTGCAACGTTGAGTAATTCTTCGTCATCGGATATTCCCTCTAAGAAGCTCGCTAGGCAGCTCGATTTCACCGGCTATGGAGGGGCCTCCAATACTCAATCTCATTCAAGCTCGCATTCACAGTCACAGGCTTCATTAGTTGCTCAGAATCTTCCGCAAGCTCAGCCAAAGCCGCAGACGCAGATGGTGGCGGCGTCGATCGCACCTTTGGCGCCTCTTTCGTCAGTACGAGCTGTGAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCTATTGAAGCTAAAGACAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGATGTCTAAAATTGTACTGCGAATGCTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATCAATTGTTATAACAATGTTGAGAATGATGCTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCGAGCAGCCCTCATGGGATGCGGGACAGCAGGGAGGAGGCGGGGGAGTTGTTGATGTTGGGTAAGCATAATAAGGGATGCCACTGCAAGAAATCAGGTTGTCTTAAAAAATATTGCGAGTGTTTCCAGGCCAACATTCTCTGTTCGGAAAACTGTAAATGCATGGATTGCAAGAATTTTGAGGGAAGTGAAGAGAGGCAAGCTCTTTTCCATGGAGACCATGGTAGCAACATGACATTCATTCAACAGGCAGCTAATGCTGCCATAACCGGAGCTATTGGCTCCTCTGGCTATGCCTCACCTCCTGTATCCAAGAAAAGAAAAGGTCAAGAACTCTACTTTGGACCAACAGCCAAAGACATATCCGCTCATCGACCAGGGCCATTTCAACAGGCAAATCATATTAGAGCCACTGCTCCTCCGCTACCATCCTTCCCTATTGCTGGTGTTGGAAGCCCATCAGTGTTGGGGCCTTCAAAGTTTACATATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTGTCAAGTGAAGCTGCCAAGACAATTCAAGACCAAACAAGTGCTACAGAAAAGCAATCAGACGGCCAGACAGAAACTTCTGTTGCATCATCCACTCAAGATGGGCAGAAAAAAGATGCATCTGATGAGAAATCTGCAGCCGATGATCGTTCAAGTGCGAACCAGGCTGATAAAATCACCCCCGATGATTCCAATTCAGATGGTGGAGATGTACCAAAGGGGGCGCCTATGTCTCCTGGAACTTTAGCTTTGATGTGCGATGAGCAAGATACGATGCTAATGGCTGCTGCTTCTCCCAATAGACTAATGGGTCCTGGCTGCAGCACCTCTTCACAACTGCCTCATGGACAAGACACATCAGAGATCTATGCCGAGCAGGAGAGGATCGTCCTTACAAAATTTAGGGATTGTCTTAATAGACTCATCACTTTAGGAGAAATAAAAGAGACAAAATGTTCATCTTTAGCCAGAAGTGAAGTAGGTAACCAAGAACAACAATTTAACAATGGCACTACAAATTCTAAAACCGACACTCAAAGTAATTTGGGCCAACTCAACAATAAAGTCACGAAACCTTCGATTACACCGTCGGTGAAGACATCTCAGACCGTAACTCCAGCAGTCATGACCCTTAGTAACGACCAGCGACAGAAAGTTTTGCCTCTGTCTTGA 1767 45.5 MGEEDSVGASQKKAQSDGATLSNSSSSDIPSKKLARQLDFTGYGGASNTQSHSSSHSQSQASLVAQNLPQAQPKPQTQMVAASIAPLAPLSSVRAVKPESPMSRARPAIEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDSREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGSNMTFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDISAHRPGPFQQANHIRATAPPLPSFPIAGVGSPSVLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTIQDQTSATEKQSDGQTETSVASSTQDGQKKDASDEKSAADDRSSANQADKITPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTMLMAAASPNRLMGPGCSTSSQLPHGQDTSEIYAEQERIVLTKFRDCLNRLITLGEIKETKCSSLARSEVGNQEQQFNNGTTNSKTDTQSNLGQLNNKVTKPSITPSVKTSQTVTPAVMTLSNDQRQKVLPLS* 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 818710 823328 + CsaV3_2G002160.1 Csa02g00117 518174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00117 588 MobiDBLite consensus disorder prediction 9 32 - -
Csa02g00117 588 MobiDBLite consensus disorder prediction 528 588 - -
Csa02g00117 588 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
Csa02g00117 588 MobiDBLite consensus disorder prediction 42 64 - -
Csa02g00117 588 PANTHER TESMIN/TSO1-RELATED 67 572 IPR028307 -
Csa02g00117 588 PANTHER TESMIN/TSO1-RELATED 25 79 IPR028307 -
Csa02g00117 588 SMART CXC_2 117 157 IPR033467 -
Csa02g00117 588 SMART CXC_2 202 243 IPR033467 -
Csa02g00117 588 MobiDBLite consensus disorder prediction 1 64 - -
Csa02g00117 588 MobiDBLite consensus disorder prediction 401 416 - -
Csa02g00117 588 MobiDBLite consensus disorder prediction 373 447 - -
Csa02g00117 588 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
Csa02g00117 588 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Csa02g00117 588 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 25 79 - -
Csa02g00117 588 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 67 572 - -
Csa02g00117 588 MobiDBLite consensus disorder prediction 373 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03456 Csa-Chr1:31559807 Csa02g00117 Csa-Chr2:818710 0 dispersed
Csa02g00117 Csa-Chr2:818710 Csa03g01301 Csa-Chr3:9943770 1.06E-31 dispersed
Csa02g00117 Csa-Chr2:818710 Csa02g01139 Csa-Chr2:11132046 2.05E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30852 PF03638 TCR 3.10E-12 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00117 - - csv:101211978 1144.8