Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00136 ATGAAGAGCGATACCCATTTCAACATTCATCTTTTCTTACATTTTTTCTTCTTCTTTGGCACTTTTCTTTTGTGCCTTTCTTCTTCTTCTTCTGCACTTGAAGAGTTTCGTCAAGCTTCTAGCCATGGAGGACGTGGTCTGACTGATGCTGAAGCTCATTACATCCGTCAACGGCAACTCCTTTACTACAGAGATGAATTTGGTGACCGTGGTGAAGAAGTTGTCGTCGATCCTAAACTTGTTTTTGAAAACGACAGAATTAGAAATGCTTACATAGCATTACAAGCTTGGAAGCAAGCGATTCTGTCTGACCCTTTAAATCTTACTAAGAATTGGGTTGGATCTGATGTTTGTCACTACAAAGGGGTTTTCTGCGCTCCGGCGCCGGATAATTCGTCGATCCGTACAGTCGCCGGAATTGACCTTAACCACGGCGACATTGCCGGGTACTTGCCTGAGGAGCTTGGTCTTCTTGTGGATCTTGCATTGTTTCATATAAACTCCAATCGGTTCTGTGGGACTGTTCCTCACAAGTTCAAGAACTTGAAGTTGTTGTTCGAGTTGGATCTGAGTAACAATCGCTTCGCCGGGAAGTTCCCTCGGGTGGTTCTTGAGTTGCCGGAGCTGAAGTTTTTGGATCTGAGGTTCAACGAGTTCGAAGGGACGGTTCCCAAGGAGCTCTTTGACAAGGATTTGGACGCCATTTTCATCAACCACAATAGATTCCGGTTTGACTTGCCGGAAAATTTCGGTAACTCGCCGGTTTCAGTTATTGTTCTTGCTAATAACAAATTTCATGGGTGTGTGCCGGGGAGCATTGGGAATATGACGAGATTGAATGAGATTATTCTCATGAATAATGGCTTTCGATCATGTTTGCCTTCGGAGATTGGGTTTCTGAAAAATTTGACAGTGTTTGATGTGAGTCACAATGAGTTTTTTGGGAAGTTGCCGGAGACGATCGGTGGAATGGTGAGTTTGGAGCAGCTGAATGTGGCGCATAATTTCTTGTCTGGGAAGATTCCAGACAGTATTTGTAAATTGCCGAATCTGCAGAACTTTACTTACTCTTATAATTTCTTTACGGGAGAAGCGCCGTCGTGCTTGGCATTACCGGACTTTGATGATCGGAGAAACTGTATTCCAGAACGACCGGTTCAACGCTCTGAGAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCTTCTTTTGTTGCTCCGTCGCCACCTGTGGTGGTGCCATCGCCGCCACCTGTGGTGGTCCCTTCTCCGCCACCTGTTGTTGTACCAACACCATCGCCACCTGTTTACCCTCCACCGCCACCTAAATCCGAGTCACATCCCATTTACCGACCACTCCCTCCGCCGCCGCCGCCGCCGCCATCCCCATCTCCCCCTCCCCCGCCTGTTTACTCCCTCCTCCACCTCCACCATCCCCACCACCGCCGTCTCCACCTCCACCGTCCCCACCACCGCCAGTTTACTCTCCACCCCCACCTCCACCATCTCCTCCACCGCCTTCTCCACCACCCCCATCACCCCCACCGCCGCCCCCACCAGTTTACTCTCACCCCCACCTCCACCTTCACCGCCCCCGCCATCTCCACCACCACCACCACCTCCGGTTTACTCTCCACCACCACCTCCACCCTCTCCTCCCCCGCCATCTCCTCCCCCACCATCGCCGCCGCCACCGGCACCGGTGTATTGCGTCCGACCATCACCCCCACCTCCACCACCAAACTCTCCCCCACCTCCTCCTCCCTTGTTCTCTCCACCCCCACCTGTTTACTACTACAATTCACCGCCACCTCCCAACTCTCCACCACCCCCACCAATGTACTCTCCTCCACCACCGCCACACTCGCCGCCTCCTCCTCCACATTCACCACCACCACCAATCTATCCTTACTTATCTCCTCCACCTCCTCCACCTGTCTATTCTCCACCTCCCCCTCCACCGGTCTATTCACCGCCTCCCCCACCGCCGTGTATAGAACCACCCCCACCTCCTCCGCCGCCGTGTATAGAATATCATGA 2061 51.97 MKSDTHFNIHLFLHFFFFFGTFLLCLSSSSSALEEFRQASSHGGRGLTDAEAHYIRQRQLLYYRDEFGDRGEEVVVDPKLVFENDRIRNAYIALQAWKQAILSDPLNLTKNWVGSDVCHYKGVFCAPAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFKNLKLLFELDLSNNRFAGKFPRVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPSEIGFLKNLTVFDVSHNEFFGKLPETIGGMVSLEQLNVAHNFLSGKIPDSICKLPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCIPERPVQRSERQCKSFLSKPVDCSSFGCPSFVAPSPPVVVPSPPPVVVPSPPPVVVPTPSPPVYPPPPPKSESHPIYRPLPPPPPPPPSPSPPPPPVYSLLHLHHPHHRRLHLHRPHHRQFTLHPHLHHLLHRLLHHPHHPHRRPHQFTLTPTSTFTAPAISTTTTTSGLLSTTTSTLSSPAISSPTIAAATGTGVLRPTITPTSTTKLSPTSSSLVLSTPTCLLLQFTATSQLSTTPTNVLSSTTATLAASSSTFTTTTNLSLLISSTSSTCLFSTSPSTGLFTASPTAVYRTTPTSSAAVYRIS* 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 948141 950201 + CsaV3_2G002350.1 Csa02g00136 518193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00136 686 Gene3D Ribonuclease Inhibitor 91 252 IPR032675 -
Csa02g00136 686 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 4 19 478 - -
Csa02g00136 686 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 19 478 - -
Csa02g00136 686 PRINTS Proline rich extensin signature 459 475 - -
Csa02g00136 686 PRINTS Proline rich extensin signature 514 539 - -
Csa02g00136 686 PRINTS Proline rich extensin signature 430 442 - -
Csa02g00136 686 PRINTS Proline rich extensin signature 409 425 - -
Csa02g00136 686 Pfam Leucine Rich Repeat 326 348 IPR001611 GO:0005515
Csa02g00136 686 SUPERFAMILY L domain-like 91 372 - -
Csa02g00136 686 MobiDBLite consensus disorder prediction 443 480 - -
Csa02g00136 686 Pfam Leucine rich repeat 163 218 IPR001611 GO:0005515
Csa02g00136 686 Pfam Leucine rich repeat N-terminal domain 93 125 IPR013210 -
Csa02g00136 686 MobiDBLite consensus disorder prediction 443 481 - -
Csa02g00136 686 Gene3D Ribonuclease Inhibitor 253 395 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02065 Csa02g00136 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02879 Csa-Chr1:25289766 Csa02g00136 Csa-Chr2:948141 1.09E-100 dispersed
Csa02g00074 Csa-Chr2:548915 Csa02g00136 Csa-Chr2:948141 1.02E-91 dispersed
Csa02g00136 Csa-Chr2:948141 Csa06g00076 Csa-Chr6:488593 3.98E-143 dispersed
Csa07g00736 Csa-Chr7:5224312 Csa02g00136 Csa-Chr2:948141 6.84E-77 dispersed
Csa07g00737 Csa-Chr7:5228844 Csa02g00136 Csa-Chr2:948141 1.90E-69 dispersed
Csa03g01297 Csa-Chr3:9923062 Csa02g00136 Csa-Chr2:948141 8.93E-157 transposed
Csa07g00490 Csa-Chr7:3545325 Csa02g00136 Csa-Chr2:948141 3.42E-131 transposed
Csa01g02065 Csa-Chr1:17694260 Csa02g00136 Csa-Chr2:948141 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00136 - - csv:101210261 788.104