Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00174 ATGGCCGGAAGTATAGGAAGAGACGAGTGGTCGGACTACGACAGCAGTTGCTCCTCTTCCATAACCGTCCCAGACTCAACCCGTAGCTGGATGAGCAACCTCAGTTTCGGGAGTAGGCGTCGCAGCAGCAGCTCAGCCGCAGACGGGGGTGGCCTTGAGAACATTACAAGCGGTACGATGATGGTGAAGCCACACAAAGCAAACGAAGTGGGATGGGAGGCGATGCGGTGGCTACGGCGAGCGAAAGGGGAAGTGGGGTTGGAGGATTTCCGGCTAATACGGCGGGTGGGGAGCGGAGATATTGGGAATGTATATTTATGTGAGATAAGGAATCCAATGGTGGGATTACCAAAGTGGTTTTACGCCATGAAAGTGGTTGATAGAGAAGCTGTATGTGTAAGGAATAAAGAGAGAAGGGCAGATATGGAAAAGGAAATATTGAAATTGCTAGATCACCCTTTTTTGCCAACTCTTTATGCTCATTTTGAAGCTTCTCATTATTCTTGTTTGGTTATGGAGTTTTGTCCTGGTGGTGATTTGTATGCTGCCAGGTTACGTCTTCCCAATAAACGCTTCTCCATTCCTTCTGCTAAGTTTTATGCGGCGGAGATAATTTTAGCTCTTGAGTATCTACACATGATGGGCATCATTTATAGAGATTTAAAGCCGGAAAACGTTTTAGTTAGAGAAGACGGCCATATCATGCTCTCCGATTTCGATCTCTGCCTCAAATGCGACGTCGTTCCAAAGCTCCTCCGTTCCCGTACCACCGCTTCCGACCGCCACGTTAGATCCTCCTCCTACAGCTTCTCCACTTCCTCCTCCTCCTGCGCTGCCGCACCCATCCAACCCGTCCTCTCTTGTTTCTCCCTCTCCCGTCGCCAAAAATCCACCACCGTCACCACCATCACCGAACACGCCTCCGACTCCATCTACAGTGGCGAGGAATTCGACCCAGAACCAGAATTAATAGCGGAACCGATAAATGCCCGGTCGAAGTCATTCGTGGGAACCCATGAGTATTTAGCTCCGGAGGTGATTTCCGGGCAGGGACACGGCAGCGGAGTGGATTGGTGGACGTTGGGGATATTCTTATACGAAATGTTGTATGGGAAAACGCCGTTTAAAGGGGAAAACAATGAGAAGACGTTGATGAATATATTGAAGCAGCCATTGAAATTTCCAAGAATTGGGATTAGTAGCAGCAAAGAATATGAAGAAATGGTGAAAGTTGAGGATTTAATTAAGAAACTTTTGGTGAAAAATCCAAAAAAAAGAATTGGGAGTTTAAAAGGATCAGTTGAGATTAAAAGACATGAATTTTTCAAAGGAATTAATTGGGCTTTAATTAGATCCGTACGACCTCCACAAATCCCCAACAACAATATTATTAACAACCTTAATTACTCTAAACACCCTTCTAATTATTTACCCAAATTAAGTAAGAAACAAAGACAACAACCTTACCAAATCCCTAATCACCATTTTGATTATTTCTAA 1500 45.2 MAGSIGRDEWSDYDSSCSSSITVPDSTRSWMSNLSFGSRRRSSSSAADGGGLENITSGTMMVKPHKANEVGWEAMRWLRRAKGEVGLEDFRLIRRVGSGDIGNVYLCEIRNPMVGLPKWFYAMKVVDREAVCVRNKERRADMEKEILKLLDHPFLPTLYAHFEASHYSCLVMEFCPGGDLYAARLRLPNKRFSIPSAKFYAAEIILALEYLHMMGIIYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLLRSRTTASDRHVRSSSYSFSTSSSSCAAAPIQPVLSCFSLSRRQKSTTVTTITEHASDSIYSGEEFDPEPELIAEPINARSKSFVGTHEYLAPEVISGQGHGSGVDWWTLGIFLYEMLYGKTPFKGENNEKTLMNILKQPLKFPRIGISSSKEYEEMVKVEDLIKKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSVRPPQIPNNNIINNLNYSKHPSNYLPKLSKKQRQQPYQIPNHHFDYF* 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1214591 1217309 - CsaV3_2G002730.1 Csa02g00174 518231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00174 499 MobiDBLite consensus disorder prediction 38 60 - -
Csa02g00174 499 Pfam Protein kinase domain 91 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00174 499 Pfam Protein kinase domain 332 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00174 499 PANTHER PROTEIN KINASE PINOID 2 7 499 - -
Csa02g00174 499 SUPERFAMILY Protein kinase-like (PK-like) 70 474 IPR011009 -
Csa02g00174 499 PANTHER FLIPPASE KINASE 1-RELATED 7 499 - -
Csa02g00174 499 MobiDBLite consensus disorder prediction 1 23 - -
Csa02g00174 499 Gene3D Phosphorylase Kinase; domain 1 87 178 - -
Csa02g00174 499 Gene3D Transferase(Phosphotransferase) domain 1 179 246 - -
Csa02g00174 499 SMART serkin_6 90 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00174 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Csa02g00174 499 ProSiteProfiles Protein kinase domain profile. 90 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00174 499 Gene3D Transferase(Phosphotransferase) domain 1 330 460 - -
Csa02g00174 499 MobiDBLite consensus disorder prediction 38 52 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02591 Csa-Chr1:22880655 Csa02g00174 Csa-Chr2:1214591 2.16E-132 dispersed
Csa02g00174 Csa-Chr2:1214591 Csa03g03977 Csa-Chr3:34781972 2.90E-147 dispersed
Csa02g00174 Csa-Chr2:1214591 Csa01g01551 Csa-Chr1:11109475 1.87E-144 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77869 PF00069 Pkinase 7.50E-31 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00174 K08286 - csv:101202905 958.747