Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g00191 | ATGGTGCCATCAAAGAAGTTTAGAGGTGTTAGGCAAAGACATTGGGGATCTTGGGTCTCTGAAATTCGTCATCCTCTTCTGAAGAGAAGAGTTTGGTTGGGGACGTTTGAGACGGCGGAGGAGGCAGCAAGAGCTTATGATCAAGCGGCCGTGTTAATGAGCGGCCGGAATGCGAAAACCAACTTTCCGATGAGCCAAACGGCGGTGTCGGAGTTTGGAAAACCGGACGATAATATGATCAATAATATCATTTCCCCATCTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTCCGAAAATGCAGCAAGGTGCCGTCGCCATCGATGACGTGTCTCCGACTGGACACCGAAAATTCCCACATCGGCGTTTGGCAGAAACGCGCTGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTTGGAAAAACCAACTCCTCCTCCTCCTCCTCCTCTACCACCACGGCTGGCGGAGGACTAGAGGACGGCGACGGTGGGCGGGTGAAAAGGAATAAAAAAAGTGGGTGTTTTTCTGGTTTGATGTCGTCGTCGCCGGAAGGCGGTGGGAGCTGCCAGATGAGGAAGTTGGAAATGGATGATGAAGAAGAAAGAATTGCATTACAAATGATTGAGGAATTACTGAGCAGAAATTATGGTAACCCATCTGAAATTATTCAACTTCAAGATCATCATCAAGGGGAGGAACCAACTTTTTTACCCTCTCTAATCTAA | 741 | 49.26 | MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTAVSEFGKPDDNMINNIISPSSPKGLSEILHAKLRKCSKVPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKTNSSSSSSSTTTAGGGLEDGDGGRVKRNKKSGCFSGLMSSSPEGGGSCQMRKLEMDDEEERIALQMIEELLSRNYGNPSEIIQLQDHHQGEEPTFLPSLI* | 247 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1316777 | 1318417 | - | CsaV3_2G002900.1 | Csa02g00191 | 518248 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g00191 | 246 | SUPERFAMILY | DNA-binding domain | 6 | 65 | IPR016177 | GO:0003677 | |
Csa02g00191 | 246 | PANTHER | AP2-EREBP TRANSCRIPTION FACTOR | 1 | 226 | - | - | |
Csa02g00191 | 246 | MobiDBLite | consensus disorder prediction | 145 | 195 | - | - | |
Csa02g00191 | 246 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g00191 | 246 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 226 | - | - | |
Csa02g00191 | 246 | Pfam | AP2 domain | 6 | 50 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g00191 | 246 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g00191 | 246 | MobiDBLite | consensus disorder prediction | 145 | 161 | - | - | |
Csa02g00191 | 246 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g00191 | 246 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Csa02g00191 | 246 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g00191 | 246 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g02012 | Csa02g00191 | CCT | |
Csa01g02012 | Csa02g00191 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g00191 | Csa-Chr2:1316777 | Csa04g02652 | Csa-Chr4:25867321 | 2.41E-33 | dispersed | |
Csa01g02012 | Csa-Chr1:16960665 | Csa02g00191 | Csa-Chr2:1316777 | 1.14E-60 | wgd | |
Csa02g00191 | Csa-Chr2:1316777 | Csa03g04338 | Csa-Chr3:37921638 | 2.71E-72 | wgd | |
Csa02g00191 | Csa-Chr2:1316777 | Csa04g00152 | Csa-Chr4:856671 | 9.89E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30858 | PF00847 | AP2 | 3.60E-12 | CL0081 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g00191 | - | - | csv:101207090 | 475.707 |