Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00191 ATGGTGCCATCAAAGAAGTTTAGAGGTGTTAGGCAAAGACATTGGGGATCTTGGGTCTCTGAAATTCGTCATCCTCTTCTGAAGAGAAGAGTTTGGTTGGGGACGTTTGAGACGGCGGAGGAGGCAGCAAGAGCTTATGATCAAGCGGCCGTGTTAATGAGCGGCCGGAATGCGAAAACCAACTTTCCGATGAGCCAAACGGCGGTGTCGGAGTTTGGAAAACCGGACGATAATATGATCAATAATATCATTTCCCCATCTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTCCGAAAATGCAGCAAGGTGCCGTCGCCATCGATGACGTGTCTCCGACTGGACACCGAAAATTCCCACATCGGCGTTTGGCAGAAACGCGCTGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTTGGAAAAACCAACTCCTCCTCCTCCTCCTCCTCTACCACCACGGCTGGCGGAGGACTAGAGGACGGCGACGGTGGGCGGGTGAAAAGGAATAAAAAAAGTGGGTGTTTTTCTGGTTTGATGTCGTCGTCGCCGGAAGGCGGTGGGAGCTGCCAGATGAGGAAGTTGGAAATGGATGATGAAGAAGAAAGAATTGCATTACAAATGATTGAGGAATTACTGAGCAGAAATTATGGTAACCCATCTGAAATTATTCAACTTCAAGATCATCATCAAGGGGAGGAACCAACTTTTTTACCCTCTCTAATCTAA 741 49.26 MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTAVSEFGKPDDNMINNIISPSSPKGLSEILHAKLRKCSKVPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKTNSSSSSSSTTTAGGGLEDGDGGRVKRNKKSGCFSGLMSSSPEGGGSCQMRKLEMDDEEERIALQMIEELLSRNYGNPSEIIQLQDHHQGEEPTFLPSLI* 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1316777 1318417 - CsaV3_2G002900.1 Csa02g00191 518248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00191 246 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Csa02g00191 246 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 226 - -
Csa02g00191 246 MobiDBLite consensus disorder prediction 145 195 - -
Csa02g00191 246 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Csa02g00191 246 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 226 - -
Csa02g00191 246 Pfam AP2 domain 6 50 IPR001471 GO:0003700|GO:0006355
Csa02g00191 246 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Csa02g00191 246 MobiDBLite consensus disorder prediction 145 161 - -
Csa02g00191 246 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Csa02g00191 246 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Csa02g00191 246 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Csa02g00191 246 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02012 Csa02g00191 CCT
Csa01g02012 Csa02g00191 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00191 Csa-Chr2:1316777 Csa04g02652 Csa-Chr4:25867321 2.41E-33 dispersed
Csa01g02012 Csa-Chr1:16960665 Csa02g00191 Csa-Chr2:1316777 1.14E-60 wgd
Csa02g00191 Csa-Chr2:1316777 Csa03g04338 Csa-Chr3:37921638 2.71E-72 wgd
Csa02g00191 Csa-Chr2:1316777 Csa04g00152 Csa-Chr4:856671 9.89E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30858 PF00847 AP2 3.60E-12 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00191 - - csv:101207090 475.707