Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00197 ATGTCAAGCTGCATCTCTAGCGCTCAAGAACAACTCTGTTATATCCCCTGCAATTTTTGCAATATAGTTCTAGCGGTGAGTGTTCCATGCAGCAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAATATGGCTGCTGCTTTTCAATCTCTCTCATGGCAAAATTCTCAGGCATCAAACCATAGCCACAGTGGCAGTGGAGGTGATCACTATAGAGTTGAATTGGGATCATCATCGAAAGCCAACAATAAGATGAAAATGAGAGCTCCAATTAAAAACCCTACAAATGATCATGATCAAAGGCTCATTAACCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAAAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCCTTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGAGTAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGTCAGGACTGCACTATTGA 579 42.83 MSSCISSAQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGGDHYRVELGSSSKANNKMKMRAPIKNPTNDHDQRLINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQSKNDGSEKHLMSVSGLHY* 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1351623 1355495 - CsaV3_2G002960.1 Csa02g00197 518254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00197 192 Gene3D High mobility group box domain 111 162 IPR036910 -
Csa02g00197 192 PANTHER AXIAL REGULATOR YABBY 5 1 182 - -
Csa02g00197 192 SUPERFAMILY HMG-box 109 159 IPR036910 -
Csa02g00197 192 Pfam YABBY protein 8 166 IPR006780 GO:0007275
Csa02g00197 192 PANTHER PROTEIN YABBY 6-RELATED 1 182 IPR006780 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00197 Csa-Chr2:1351623 Csa05g00395 Csa-Chr5:2561275 1.38E-50 dispersed
Csa05g02521 Csa-Chr5:26755968 Csa02g00197 Csa-Chr2:1351623 8.22E-41 transposed
Csa06g02479 Csa-Chr6:22073762 Csa02g00197 Csa-Chr2:1351623 4.69E-67 transposed
Csa01g02026 Csa-Chr1:17106850 Csa02g00197 Csa-Chr2:1351623 2.93E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30859 PF04690 YABBY 3.20E-71 CL0114 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00197 K25796 - csv:101219877 388.652