Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00212 ATGGAGGAAAATGAAAACTGTGGGTGTTGGGCAGTCCTTAAACGCACCGTTTCCGACGTTTCCAAATCTTCTCCTTCTTCTAAACATTCTCCCAACTCCATTCCTCGCCTTACTTTGCTTGACGATTCAGCTACCGAGACCCGATACTTAAACGCAAGCGACCGAGATTTCTGTGCGCCGGCCGAACCTCGGCTATCCTTCGACAATGCTCCGCTGCCGACGAGGTTGGAGGACAAATATAAACCCCAGTTGCTAAAATTTTCATTTCAGGAACTAAGATCGGCGACCGGGAATTTCCGGCCAGATAGCATTCTGGGAGAAGGAGGATTTGGATTCGTTTTCAAAGGATGGATTGAAGAGAATGGGACGGCGCCGGCGAAACCTGGATCAGGAATCACTGTCGCCGTTAAAAGCTTGAAACCGGATGGCCTTCAAGGACACAGAGAATGGGAGGCTGAGGTTAGTTTTCTTGGACAGCTTCATCATCCTAATCTTGTTAAACTTATTGGATATTGTATTGAAGATGATCAAAGGCTTCTTGTATATGAATTTATGACGCGTGGTAGTCTTGAAAATCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCAAACAGGATTAAAATTGCACTTGCTGCAGCCAAAGGCTTGGCCTTCCTCCACAATGGTCCAGAACCTGTCATATATAGAGACTTCAAAACATCAAACATATTGCTTGATACGGAGTACAATGCGAAGCTTTCGGATTTTGGTTTGGCAAAGGCTGGGCCTCAAGGAGACAAAACACATGTTTCCACCAGAGTAGTTGGAACATATGGCTATGCTGCACCAGAATATCTAATGACAGGGCATTTGACTTCAAAGAGTGATGTATATAGCTTCGGCGTTGTCCTACTCGAGATCTTAACAGGAAGGAGATCAATGGACAAGAAACGTCCAAGTGGTGAACAGAACCTAGTGTCATGGGCTAGACCATATTTAGATGACAAAAGGAAGCTTTATCATATAGTGGACCCTCGTTTGGAGCTTAACTACTCCATCCAGGGCGTTCAAAAAATCTCTCGACTTGCTTCTCACTGTATCAGTAGAGATCCAAAATCTCGTCCGACCATGGATGAAGTTGTCAAGGTTCTGGTTCCTCTACAAGACCTAAACGACCTTGCCATCCTAGCATATCATTCACGCTTGTCTCAACAAGGTCGACGAAAGAAGAAATCAGATGGACTGCACCAGTTAACATACACTCAATCAAGAAATATTAGAACCTCTCCTTTGAATGTTGGAGTTCATCGTCGTCGATAA 1302 44.47 MEENENCGCWAVLKRTVSDVSKSSPSSKHSPNSIPRLTLLDDSATETRYLNASDRDFCAPAEPRLSFDNAPLPTRLEDKYKPQLLKFSFQELRSATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWEAEVSFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTIPLPWSNRIKIALAAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYLMTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLDDKRKLYHIVDPRLELNYSIQGVQKISRLASHCISRDPKSRPTMDEVVKVLVPLQDLNDLAILAYHSRLSQQGRRKKKSDGLHQLTYTQSRNIRTSPLNVGVHRRR* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1468123 1472943 - CsaV3_2G003110.1 Csa02g00212 518269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00212 433 Gene3D Phosphorylase Kinase; domain 1 74 184 - -
Csa02g00212 433 ProSitePatterns Protein kinases ATP-binding region signature. 105 137 IPR017441 GO:0005524
Csa02g00212 433 Gene3D Transferase(Phosphotransferase) domain 1 185 394 - -
Csa02g00212 433 SUPERFAMILY Protein kinase-like (PK-like) 80 382 IPR011009 -
Csa02g00212 433 PANTHER OS01G0588500 PROTEIN-RELATED 79 401 - -
Csa02g00212 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Csa02g00212 433 ProSiteProfiles Protein kinase domain profile. 99 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00212 433 CDD STKc_IRAK 105 381 - -
Csa02g00212 433 Pfam Protein tyrosine and serine/threonine kinase 103 378 IPR001245 GO:0004672|GO:0006468
Csa02g00212 433 PANTHER OS01G0588500 PROTEIN 79 401 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01768 Csa02g00212 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01768 Csa-Chr1:14453580 Csa02g00212 Csa-Chr2:1468123 0 dispersed
Csa02g00212 Csa-Chr2:1468123 Csa05g02420 Csa-Chr5:26216079 2.07E-176 dispersed
Csa02g00212 Csa-Chr2:1468123 Csa05g02971 Csa-Chr5:30024348 4.41E-180 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77870 PF07714 PK_Tyr_Ser-Thr 7.00E-49 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00212 - - csv:101217498 857.055