Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00222 ATGTCGTTGACACTAGCTGATTCCACCAATGGCGATGAAGAATCCATCATCACTCCCTTGCTTGCCCAGAAATCGCTTGCAAATTCTTCCTCACAGGTTGCTATTGTTGGAGCTAATGTTTGCCCCATTGAGAGCCTTGATTACGAGATTTTCGATAATGAGTGCTTCATGCAAGATTGGAGAAGTCGTGGGGATTTCCAGATATTTCAGTACTTGGTTATGAAGTGGCTTTCATGCTTCTTGATTGGTTTGATCATGGGTCTTGTTGGATTTTTCAATAACCTGGCGGTGGAGAATATTGCAGGGAAGAAGTTTGTGATCACTTCGAATATGATGCTCGAGGGCAGGTATGGGATGGCTTTTCTTGTTTTCTCTGTTTCCAATTTAGTTCTCACCCTATTCGCATCTGTCATTACGGCATTGATCTGTCCCCAAGCAGCTGGTTCAGGTATACCAGAAGTAAAGGCTTATCTGAATGGTGTGGATGCCCCTGGAATATTATCGCCTCGGACGCTGTTAGTGAAGATTGTTGGCAGCATTTCTATTGTGTCATCATCGATGATTGTTGGAAAAGCTGGGCCTATGGTACATACTGGGGCATGCGTTGCATCCTTGGTAGGGCGGGGGGGTTTCAAAATATTTGGCTCAACATGGAGATGGCTATACCTTCTCAAGAATGATCGAGATAGGCGGGATCTTGTAACATGTGGAGCCGCTGCTGGAATAGCTGCTTCTTTTCGTGCTCCTGTTGGTGGTGTGTTATTTGCTTTTGAAGAGATGGCATCTTGGTGGAGAAGTGCCATTCTGTGGCGATCATTTTTCACAACGGCTGTAGTTGCTGTGGTATTACGCTCACTGATTGACATGTGTTTAAATGGATTATGTGGATTATTTGGTAAAGGGGGACTTATAATATTTGATACCTACTCAGACTTTCCTACATATCACCTCGAAGATCTACCTCCTGTGCTTGTTCTTGCTTTTATCGGAGGCATACTTGGAAGCTTATATAATTTTTTTTTGAACAAACTTCTTCGCATTTATAATCTCATACACGAGAAAGGCATTATTTACAAAATTTTACTGGCTTGCACGGTCTCAATTTTCACATCCTTCCTTCTTTTTGGATTACCATGGTTTGCATCGTGCCAACCTTGCCCATCAAGTGCTCGAGAAATTTGTCCTACCATAGGTAGATCTGGTAACTTCAAGAAGTTTCAGTGTGCTCCTGGTCACTACAATGATCTTGCAAGTCTCATATTTAACACCAATGACGATGCCATAAAAAATCTCTTTAGCAAGGACACAGACTCCGAGTTCCAGTTGTCATCAATGCTCACATTTTTTGTTACCTGTTTTTCCTTGAGCATTCTAAGTTATGGGACAGTTGCTCCTGTTGGCTTGTTTGTCCCTGTTATTGTGACTGGAGCTTCTTATGGTCGTTTCATCGGAATGATTGTCAGTCCACACACGAACCTAAGCCATGGCTTCTTTGCCATATTAGGTGCTGCTTCATTTCTCGGGGGGACGATGAGAACAACAGTTTCTCTCTGTGTTATTTTGCTTGAATTGACCAATAATTTGTTGTTACTGCCTTTAATAATGTTGGTTCTTCTTATTTCCAAGACCGTAGCTGATGCTTTCAACAGTAATATATATAACTTGATCATGAAAGCGAAAGGATTTCCTTATCTATATGGCCATGTTGAGCCATACATGAGGCAGCTCAATGTTGTTGATGTACTAACGAGTCCGCTTCAATTATTTAACGGCATTGAGAAGGTTCGCAATGTAGTAAACGTTCTCAGTATGACAAGCCATCACGGATTTCCTGTCATTGACGAACCTCCTTTCTCCGAATACCCTATTTTATATGGTCTAGTTCTCAGAACCCACATTATCATGTTGTTAAAGAAGAAAGCTTTCTTGTCCGTTCCAACACTAGGATCAGAAAGAGAAGATCCTTGCAAGCTATTCTCAGCTGATGATTTCGCCAAGATGGGTTCAGGTGATGTTGAAAGGATTGAAGATGTACAATTGACTGATGAAGAGATGGAGATGTTCATTGATCTACATCCGTTTGCCAATACTTCACCTTGTACTGTCATGGAGACCACGTCACTTGCAAAGGCTCTTGAAATTTTTCGAGAAACTGGTTTAAGACACATGTTGGTGATTCCCAAGGTCCCTGGGAGATCGCCCGTGGTTGGTGTATTGACTCGGCACGACTTTATGCCAGATTACATTCTCAGTTTGCATCCAAGGCTGGAGAAAAGCAGATGGAAAAGGTTAAGAATCAAATTTCACCTGAAGAAAAAATTCTTCTAG 2328 41.92 MSLTLADSTNGDEESIITPLLAQKSLANSSSQVAIVGANVCPIESLDYEIFDNECFMQDWRSRGDFQIFQYLVMKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVITSNMMLEGRYGMAFLVFSVSNLVLTLFASVITALICPQAAGSGIPEVKAYLNGVDAPGILSPRTLLVKIVGSISIVSSSMIVGKAGPMVHTGACVASLVGRGGFKIFGSTWRWLYLLKNDRDRRDLVTCGAAAGIAASFRAPVGGVLFAFEEMASWWRSAILWRSFFTTAVVAVVLRSLIDMCLNGLCGLFGKGGLIIFDTYSDFPTYHLEDLPPVLVLAFIGGILGSLYNFFLNKLLRIYNLIHEKGIIYKILLACTVSIFTSFLLFGLPWFASCQPCPSSAREICPTIGRSGNFKKFQCAPGHYNDLASLIFNTNDDAIKNLFSKDTDSEFQLSSMLTFFVTCFSLSILSYGTVAPVGLFVPVIVTGASYGRFIGMIVSPHTNLSHGFFAILGAASFLGGTMRTTVSLCVILLELTNNLLLLPLIMLVLLISKTVADAFNSNIYNLIMKAKGFPYLYGHVEPYMRQLNVVDVLTSPLQLFNGIEKVRNVVNVLSMTSHHGFPVIDEPPFSEYPILYGLVLRTHIIMLLKKKAFLSVPTLGSEREDPCKLFSADDFAKMGSGDVERIEDVQLTDEEMEMFIDLHPFANTSPCTVMETTSLAKALEIFRETGLRHMLVIPKVPGRSPVVGVLTRHDFMPDYILSLHPRLEKSRWKRLRIKFHLKKKFF* 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1536525 1542173 - CsaV3_2G003210.1 Csa02g00222 518279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00222 775 Gene3D - 567 746 IPR046342 -
Csa02g00222 775 SUPERFAMILY Clc chloride channel 53 566 IPR014743 -
Csa02g00222 775 PANTHER CHLORIDE CHANNEL PROTEIN 11 767 - -
Csa02g00222 775 Pfam Voltage gated chloride channel 132 546 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Csa02g00222 775 ProSiteProfiles CBS domain profile. 695 755 IPR000644 -
Csa02g00222 775 PRINTS Plant CLC chloride channel signature 49 57 IPR002251 GO:0005247|GO:0006821|GO:0016020
Csa02g00222 775 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Csa02g00222 775 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Csa02g00222 775 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Csa02g00222 775 PRINTS Plant CLC chloride channel signature 416 432 IPR002251 GO:0005247|GO:0006821|GO:0016020
Csa02g00222 775 SUPERFAMILY CBS-domain pair 567 745 IPR046342 -
Csa02g00222 775 CDD CBS_pair_voltage-gated_CLC_euk_bac 580 747 - -
Csa02g00222 775 Pfam CBS domain 697 744 IPR000644 -
Csa02g00222 775 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 11 767 - -
Csa02g00222 775 Gene3D Clc chloride channel 67 566 - -
Csa02g00222 775 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Csa02g00222 775 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Csa02g00222 775 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Csa02g00222 775 PRINTS Chloride channel signature 464 484 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Csa02g00222 775 PRINTS Chloride channel signature 496 512 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Csa02g00222 775 PRINTS Chloride channel signature 514 533 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Csa02g00222 775 PRINTS Chloride channel signature 552 566 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00222 Csa-Chr2:1536525 Csa03g00661 Csa-Chr3:5756816 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00222 K05016 - csv:101216071 1489.94