Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00244 ATGACTGTGGAGGTTCGAAAGACTAATTTGGTTGGTGAAAATGATGATATGGAGCAGTTTCCTATTGGTATGCGTGTTCTTGCTGTAGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGTCAATATCATGTTACAACAACCAATCAGGCAGTTCAGGCACTTAAAATGTTGAGGGAGAACAAAAACAGATTTGACCTGGTTATCAGCGATGTTAACATGCCCGATATGGATGGTTTTAAGCTCCTTGAGCTCGTAGGCCTTGAAATGGACCTACCTGTTATAATGTTGTCTGCTCATAGCAATACTGAACTCGTAAAGAAGGGAGTTCTTCACGGTGCATGCGACTATTTGCTGAAACCTGTTCGAATTGAAGAACTGAAGAATATATGGCAACATGTTCTTCGAAGAAAGAAACCTTCTGTTAAGAACCAAAATAAGAGCATTATTGGAAATAACACTAGTCAAAGTGTTGAAGTTGCCAAAGGTTGTCCACCTGCAGTCAGTACTGATAACGAGAAATCTGGTAAAAGACAGAAAGACCAAGATGATGACGAGGAAGGAGGTGAAGAAGACAGTACTTATGAGAACGACGATTCCTCCACCCAAAAAAAGCCAAGAGTAAATTGGTATGATGGAGATGAGAATTTGCACAGGAAGTTTGTGGCAGCTGTTAACATTTTGGGCTATGAAAAGGCTGTTCCCAAAAAGATCCTTGATCTGATGAATGTTGAAGGTCTTACAAGAGAAAATGTGGCCAGCCATCTTCAGAAATACAGACAATACCTTAAAAAACTGTGTAGTGAGGAATCTGAGCAATGTAACAAGATGGGTGCATTTGGAGGTACACACACCTCCTTCAGGCCCATGGCATCACTCGATGGATTTTCAATGACTGGAACAGGAAGGCTCTCGAATGCTACATTCTCACAGTATCCCTCTCGAGAAATAGTTGGCCAATTAAACTCTACTGCTGGATTGAGCTTAAATGATATTGCGTCCTCTGGAATGATACAGTCCCATAAATTGAGTAACTCATTAAGTTTCATTGGAAAACCCCATCCACCTTTCTTCCACACAAACCAACCTCCGCACACATTCAATGGCATTTCAATGTCATTGGATCACATTCAGTTACACAGAGACAAACGCACTCTGTCATTTAAAGAATCTAATTTGATAAATGATGCCTCAAGTTTTACAGTTTCCACCAGCTTCCCTGATGCTGGAAGGGCTGTTGGTAGCTCAAGCAATTATGATTTCGGTGTTTCAAGCCATTCATTGATGTTACGAGAACATAAGCAACAGATTCATGGCGATGGAGAATTCGGAGGGCAGTCTTCTCTTAAGATAACTCTAGACAACCGAGAACCGTTAGACAGCGGCACAAGTGTTTCTAATATTTTGGGCCACAGTCAGTCTAACAAAAACTGGCCGGGTTCAATCCAGCTCCCCAAATTTTCATCTAATGTCTCGGTCACTGGAATTTACCCTCCTGATGGAATGCCCGGTACTTATTTGACAATTTCCTCAGCTCAGCCCGATAACGACAACTTTCCTGTTGGTTTTCCTTCAACAAGTGGGGATTCAAGTTCTCATCTTGATTTAAGAGGGGACACACAATGCTATGAAGAACTAATTGGTAGTGTTGTTGAAGCGACGAATGGAAGATCAAAACAACAATGGGAAGCAGCTAAACAGGATTACTATGGCAACCATAGTTCCGTTGTGAGGGACTCTTTTGTTTCTGGGAATAGTGTTGCAGATCCCTTGATCCAGAGTGCAAATCAGAACAATGCAATCTGTCTCGGAAACATGAGCAGCTCTTCGACCAACCAATTGAATATTGGTGCTCCAACCTTCATTCACGATGGTGTGGAAATATCTACAATGAACACTTGGATGAACTACGATGGGAAAATCCCCATGGATCAAACAAAGCTACAACATGGATTTTCAAGTTCTAGTTTCAATTCCTTGGATGAGTTGGTTAATGCTCTGTCGAAACAGGATCAAGATCAATCTATTCAAATAAATGGCGAATTTGGATTTGACGCACAATCTCTCGGCTCATCGTGTATATGA 2100 41.33 MTVEVRKTNLVGENDDMEQFPIGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENKNRFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSNTELVKKGVLHGACDYLLKPVRIEELKNIWQHVLRRKKPSVKNQNKSIIGNNTSQSVEVAKGCPPAVSTDNEKSGKRQKDQDDDEEGGEEDSTYENDDSSTQKKPRVNWYDGDENLHRKFVAAVNILGYEKAVPKKILDLMNVEGLTRENVASHLQKYRQYLKKLCSEESEQCNKMGAFGGTHTSFRPMASLDGFSMTGTGRLSNATFSQYPSREIVGQLNSTAGLSLNDIASSGMIQSHKLSNSLSFIGKPHPPFFHTNQPPHTFNGISMSLDHIQLHRDKRTLSFKESNLINDASSFTVSTSFPDAGRAVGSSSNYDFGVSSHSLMLREHKQQIHGDGEFGGQSSLKITLDNREPLDSGTSVSNILGHSQSNKNWPGSIQLPKFSSNVSVTGIYPPDGMPGTYLTISSAQPDNDNFPVGFPSTSGDSSSHLDLRGDTQCYEELIGSVVEATNGRSKQQWEAAKQDYYGNHSSVVRDSFVSGNSVADPLIQSANQNNAICLGNMSSSSTNQLNIGAPTFIHDGVEISTMNTWMNYDGKIPMDQTKLQHGFSSSSFNSLDELVNALSKQDQDQSIQINGEFGFDAQSLGSSCI* 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1638210 1643778 - CsaV3_2G003430.1 Csa02g00244 518301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00244 699 Gene3D - 24 184 - -
Csa02g00244 699 Gene3D - 206 272 - -
Csa02g00244 699 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 266 IPR006447 GO:0003677
Csa02g00244 699 SUPERFAMILY Homeodomain-like 208 270 IPR009057 -
Csa02g00244 699 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Csa02g00244 699 SMART REC_2 24 136 IPR001789 GO:0000160
Csa02g00244 699 MobiDBLite consensus disorder prediction 147 215 - -
Csa02g00244 699 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 - -
Csa02g00244 699 SUPERFAMILY CheY-like 23 148 IPR011006 -
Csa02g00244 699 CDD REC_typeB_ARR-like 26 140 - -
Csa02g00244 699 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 IPR045279 GO:0009736
Csa02g00244 699 MobiDBLite consensus disorder prediction 149 165 - -
Csa02g00244 699 PIRSF RR_ARR_type-B 1 699 IPR017053 GO:0003677|GO:0003700|GO:0009736
Csa02g00244 699 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00244 K14491 ARR-B; two-component response regulator ARR-B family - csv:101203718 1386.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02143 Csa-Chr1:18615302 Csa02g00244 Csa-Chr2:1638210 2.23E-56 dispersed
Csa02g00244 Csa-Chr2:1638210 Csa04g02646 Csa-Chr4:25830357 5.13E-139 dispersed
Csa05g00009 Csa-Chr5:54545 Csa02g00244 Csa-Chr2:1638210 2.76E-24 transposed
Csa01g01861 Csa-Chr1:15634051 Csa02g00244 Csa-Chr2:1638210 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa04g02646 . 52 346 Response Regulator Gene Family AT3G16857 53.3 4.4e-60 229.6
Csa02g01797 . 52 256 Response Regulator Gene Family AT3G16857 54.2 9.4e-55 211.8
Csa02g00244 . 59 316 Response Regulator Gene Family AT3G16857 51.8 1.3e-51 201.4
Csa04g02646 . 1 412 Response Regulator Gene Family AT4G31920 51.2 7.5e-88 321.6
Csa02g00244 . 13 340 Response Regulator Gene Family AT4G31920 54.8 1.4e-78 290.8
Csa06g01765 CCT,ECH 31 284 Response Regulator Gene Family AT4G31920 55.1 2.9e-71 266.5
Csa03g01497 CCT,ECH 16 270 Response Regulator Gene Family AT4G31920 53.1 6.0e-69 258.8
Csa02g01797 . 11 259 Response Regulator Gene Family AT4G31920 50.8 2.4e-62 236.9
Csa03g01497 CCT,ECH 99 261 Response Regulator Gene Family AT1G67710 53.8 1.8e-39 160.6
Csa01g01861 . 16 390 Response Regulator Gene Family AT2G25180 56.2 5.2e-103 372.1
Csa02g00244 . 17 412 Response Regulator Gene Family AT2G25180 50.1 3.2e-84 309.7
Csa03g01497 CCT,ECH 18 290 Response Regulator Gene Family AT2G25180 54.7 1.7e-77 287.3
Csa02g01797 . 11 256 Response Regulator Gene Family AT2G25180 56.0 4.9e-69 259.2
Csa06g01765 CCT,ECH 92 325 Response Regulator Gene Family AT2G01760 50.6 3.5e-53 205.7
Csa01g01861 . 79 303 Response Regulator Gene Family AT2G01760 53.1 1.8e-49 193.4
Csa02g01797 . 72 259 Response Regulator Gene Family AT2G01760 51.5 1.5e-48 190.3
Csa02g01797 . 9 258 Response Regulator Gene Family AT5G58080 51.0 3.7e-62 236.5
Csa06g01765 CCT,ECH 29 255 Response Regulator Gene Family AT4G16110 66.0 2.6e-79 293.5
Csa03g01497 CCT,ECH 12 241 Response Regulator Gene Family AT4G16110 65.3 2.2e-78 290.4
Csa04g02646 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.2e-61 233.4
Csa02g01797 . 10 235 Response Regulator Gene Family AT4G16110 54.9 5.2e-59 226.1
Csa01g01861 . 17 249 Response Regulator Gene Family AT4G16110 53.4 6.3e-57 219.2
Csa02g00244 . 12 266 Response Regulator Gene Family AT4G16110 52.0 2.7e-52 203.8
Csa01g00186 . 30 186 Response Regulator Gene Family AT3G48100 69.0 1.1e-51 199.9
Csa05g02375 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.5e-51 197.6
Csa05g01629 . 11 150 Response Regulator Gene Family AT3G48100 60.0 2.0e-40 162.5
Csa03g03727 CCT 3 161 Response Regulator Gene Family AT3G48100 53.5 5.7e-40 161.0
Csa05g02855 . 103 262 Response Regulator Gene Family AT3G48100 55.9 1.7e-39 159.5
Csa04g01951 CCT 10 156 Response Regulator Gene Family AT3G48100 55.8 2.2e-39 159.1
Csa05g00905 . 26 161 Response Regulator Gene Family AT3G48100 55.9 2.6e-37 152.1
Csa05g02375 . 1 175 Response Regulator Gene Family AT1G59940 65.4 3.4e-56 215.7
Csa01g00186 . 9 158 Response Regulator Gene Family AT1G59940 62.3 5.5e-46 181.8
Csa03g03727 CCT 8 162 Response Regulator Gene Family AT1G59940 55.8 1.5e-40 163.7
Csa05g01629 . 5 151 Response Regulator Gene Family AT1G59940 59.9 3.4e-40 162.5
Csa05g02855 . 98 247 Response Regulator Gene Family AT1G59940 57.3 3.4e-40 162.5
Csa04g01951 CCT 11 154 Response Regulator Gene Family AT1G59940 55.6 1.1e-38 157.5
Csa05g00905 . 24 157 Response Regulator Gene Family AT1G59940 61.2 1.9e-38 156.8
Csa05g02375 . 16 185 Response Regulator Gene Family AT1G10470 67.1 3.7e-55 211.8
Csa01g00186 . 29 167 Response Regulator Gene Family AT1G10470 64.8 3.9e-44 175.3
Csa03g03727 CCT 10 153 Response Regulator Gene Family AT1G10470 58.3 4.4e-40 161.8
Csa05g01629 . 5 156 Response Regulator Gene Family AT1G10470 56.7 1.7e-39 159.8
Csa05g02855 . 98 247 Response Regulator Gene Family AT1G10470 55.3 3.2e-38 155.6
Csa04g01951 CCT 17 154 Response Regulator Gene Family AT1G10470 59.4 4.1e-38 155.2
Csa05g00905 . 26 157 Response Regulator Gene Family AT1G10470 60.6 1.6e-37 153.3
Csa01g00186 . 30 186 Response Regulator Gene Family AT3G48100 69.0 1.1e-51 199.9
Csa05g02375 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.5e-51 197.6
Csa05g01629 . 11 150 Response Regulator Gene Family AT3G48100 60.0 2.0e-40 162.5
Csa03g03727 CCT 3 161 Response Regulator Gene Family AT3G48100 53.5 5.7e-40 161.0
Csa05g02855 . 103 262 Response Regulator Gene Family AT3G48100 55.9 1.7e-39 159.5
Csa04g01951 CCT 10 156 Response Regulator Gene Family AT3G48100 55.8 2.2e-39 159.1
Csa05g00905 . 26 161 Response Regulator Gene Family AT3G48100 55.9 2.6e-37 152.1
Csa01g00186 . 30 163 Response Regulator Gene Family AT5G62920 76.1 8.0e-50 193.7
Csa05g02375 . 11 175 Response Regulator Gene Family AT5G62920 64.2 1.0e-49 193.4
Csa05g01629 . 9 150 Response Regulator Gene Family AT5G62920 59.2 8.9e-41 163.7
Csa03g03727 CCT 10 155 Response Regulator Gene Family AT5G62920 55.5 1.7e-39 159.5
Csa04g01951 CCT 12 156 Response Regulator Gene Family AT5G62920 56.6 2.9e-39 158.7
Csa05g02855 . 89 262 Response Regulator Gene Family AT5G62920 50.9 4.9e-39 157.9
Csa01g00186 . 29 162 Response Regulator Gene Family AT1G19050 73.1 2.2e-48 189.1
Csa05g02375 . 28 185 Response Regulator Gene Family AT1G19050 60.4 1.1e-44 176.8
Csa03g03727 CCT 8 158 Response Regulator Gene Family AT1G19050 53.0 9.2e-39 157.1
Csa04g01951 CCT 11 156 Response Regulator Gene Family AT1G19050 54.1 7.8e-38 154.1
Csa05g02855 . 100 244 Response Regulator Gene Family AT1G19050 55.2 7.8e-38 154.1
Csa05g01629 . 3 153 Response Regulator Gene Family AT1G19050 52.3 6.6e-37 151.0
Csa04g01951 CCT 8 262 Response Regulator Gene Family AT2G41310 53.7 3.0e-59 225.3
Csa03g03727 CCT 1 159 Response Regulator Gene Family AT2G41310 71.3 9.6e-58 220.3
Csa05g01629 . 1 152 Response Regulator Gene Family AT2G41310 64.5 6.9e-48 187.6
Csa05g02855 . 94 240 Response Regulator Gene Family AT2G41310 67.3 6.9e-48 187.6
Csa06g02147 . 20 161 Response Regulator Gene Family AT2G41310 62.9 6.1e-44 174.5
Csa01g00186 . 28 159 Response Regulator Gene Family AT2G41310 61.9 2.8e-41 165.6
Csa05g02375 . 25 158 Response Regulator Gene Family AT2G41310 58.9 2.8e-41 165.6
Csa05g00905 . 26 161 Response Regulator Gene Family AT2G41310 57.4 3.7e-41 165.2
Csa04g01951 CCT 8 262 Response Regulator Gene Family AT3G57040 53.5 3.9e-62 235.0
Csa03g03727 CCT 1 157 Response Regulator Gene Family AT3G57040 77.1 1.7e-60 229.6
Csa05g01629 . 1 155 Response Regulator Gene Family AT3G57040 66.5 1.3e-49 193.4
Csa05g02855 . 99 240 Response Regulator Gene Family AT3G57040 69.0 5.0e-49 191.4
Csa06g02147 . 20 184 Response Regulator Gene Family AT3G57040 56.6 1.7e-44 176.4
Csa05g02375 . 25 158 Response Regulator Gene Family AT3G57040 59.4 3.1e-43 172.2
Csa01g00186 . 25 159 Response Regulator Gene Family AT3G57040 61.8 3.5e-42 168.7
Csa05g00905 . 24 161 Response Regulator Gene Family AT3G57040 57.9 2.5e-40 162.5
Csa01g00186 . 24 182 Response Regulator Gene Family AT1G74890 68.7 7.2e-52 200.7
Csa05g02375 . 25 187 Response Regulator Gene Family AT1G74890 61.8 2.4e-47 185.7
Csa05g02855 . 93 250 Response Regulator Gene Family AT1G74890 58.2 5.2e-42 167.9
Csa04g01951 CCT 12 175 Response Regulator Gene Family AT1G74890 51.8 5.4e-39 157.9
Csa03g03727 CCT 8 153 Response Regulator Gene Family AT1G74890 54.8 9.2e-39 157.1
Csa05g01629 . 7 145 Response Regulator Gene Family AT1G74890 59.7 1.6e-38 156.4
Csa05g00905 . 26 162 Response Regulator Gene Family AT2G40670 67.4 1.4e-45 179.5
Csa03g03727 CCT 6 155 Response Regulator Gene Family AT2G40670 55.0 1.5e-39 159.5
Csa05g02375 . 26 159 Response Regulator Gene Family AT2G40670 55.5 1.5e-39 159.5
Csa05g00905 . 26 162 Response Regulator Gene Family AT3G56380 66.7 2.0e-46 182.2
Csa05g02375 . 26 159 Response Regulator Gene Family AT3G56380 54.8 2.8e-40 161.8
Csa03g03727 CCT 6 155 Response Regulator Gene Family AT3G56380 55.0 1.8e-39 159.1
Csa01g00186 . 24 160 Response Regulator Gene Family AT3G56380 57.2 5.3e-39 157.5
Csa05g02855 . 93 239 Response Regulator Gene Family AT3G56380 55.4 3.4e-38 154.8
Csa05g01629 . 11 153 Response Regulator Gene Family AT3G56380 56.9 7.6e-38 153.7
Csa04g02646 . 52 346 Response Regulator Gene Family AT3G16857 53.3 4.4e-60 229.6
Csa02g01797 . 52 256 Response Regulator Gene Family AT3G16857 54.2 9.4e-55 211.8
Csa02g00244 . 59 316 Response Regulator Gene Family AT3G16857 51.8 1.3e-51 201.4
Csa06g01765 CCT,ECH 29 255 Response Regulator Gene Family AT4G16110 66.0 2.6e-79 293.5
Csa03g01497 CCT,ECH 12 241 Response Regulator Gene Family AT4G16110 65.3 2.2e-78 290.4
Csa04g02646 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.2e-61 233.4
Csa02g01797 . 10 235 Response Regulator Gene Family AT4G16110 54.9 5.2e-59 226.1
Csa01g01861 . 17 249 Response Regulator Gene Family AT4G16110 53.4 6.3e-57 219.2
Csa02g00244 . 12 266 Response Regulator Gene Family AT4G16110 52.0 2.7e-52 203.8
Csa04g02646 . 1 412 Response Regulator Gene Family AT4G31920 51.2 7.5e-88 321.6
Csa02g00244 . 13 340 Response Regulator Gene Family AT4G31920 54.8 1.4e-78 290.8
Csa06g01765 CCT,ECH 31 284 Response Regulator Gene Family AT4G31920 55.1 2.9e-71 266.5
Csa03g01497 CCT,ECH 16 270 Response Regulator Gene Family AT4G31920 53.1 6.0e-69 258.8
Csa02g01797 . 11 259 Response Regulator Gene Family AT4G31920 50.8 2.4e-62 236.9
Csa03g01497 CCT,ECH 99 261 Response Regulator Gene Family AT1G67710 53.8 1.8e-39 160.6
Csa01g01861 . 16 390 Response Regulator Gene Family AT2G25180 56.2 5.2e-103 372.1
Csa02g00244 . 17 412 Response Regulator Gene Family AT2G25180 50.1 3.2e-84 309.7
Csa03g01497 CCT,ECH 18 290 Response Regulator Gene Family AT2G25180 54.7 1.7e-77 287.3
Csa02g01797 . 11 256 Response Regulator Gene Family AT2G25180 56.0 4.9e-69 259.2
Csa06g01765 CCT,ECH 92 325 Response Regulator Gene Family AT2G01760 50.6 3.5e-53 205.7
Csa01g01861 . 79 303 Response Regulator Gene Family AT2G01760 53.1 1.8e-49 193.4
Csa02g01797 . 72 259 Response Regulator Gene Family AT2G01760 51.5 1.5e-48 190.3
Csa02g01797 . 9 258 Response Regulator Gene Family AT5G58080 51.0 3.7e-62 236.5
Csa01g00568 . 35 585 Response Regulator Gene Family AT5G61380 50.6 5.9e-142 501.5
Csa04g01435 . 38 206 Response Regulator Gene Family AT5G60100 68.6 8.1e-55 211.5
Csa05g00009 . 50 187 Response Regulator Gene Family AT5G60100 61.6 2.0e-45 180.3
Csa04g01435 . 67 206 Response Regulator Gene Family AT5G24470 55.0 3.2e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005633 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 4 15 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30861 PF00072 Response_reg 2.40E-25 CL0304 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00244 Csa_Chr02 FPKM 15.368189 18.432453 15.662142 14.956212 20.070713 18.394392 23.248587 17.595459 16.446264 18.377056