Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00244 ATGACTGTGGAGGTTCGAAAGACTAATTTGGTTGGTGAAAATGATGATATGGAGCAGTTTCCTATTGGTATGCGTGTTCTTGCTGTAGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGTCAATATCATGTTACAACAACCAATCAGGCAGTTCAGGCACTTAAAATGTTGAGGGAGAACAAAAACAGATTTGACCTGGTTATCAGCGATGTTAACATGCCCGATATGGATGGTTTTAAGCTCCTTGAGCTCGTAGGCCTTGAAATGGACCTACCTGTTATAATGTTGTCTGCTCATAGCAATACTGAACTCGTAAAGAAGGGAGTTCTTCACGGTGCATGCGACTATTTGCTGAAACCTGTTCGAATTGAAGAACTGAAGAATATATGGCAACATGTTCTTCGAAGAAAGAAACCTTCTGTTAAGAACCAAAATAAGAGCATTATTGGAAATAACACTAGTCAAAGTGTTGAAGTTGCCAAAGGTTGTCCACCTGCAGTCAGTACTGATAACGAGAAATCTGGTAAAAGACAGAAAGACCAAGATGATGACGAGGAAGGAGGTGAAGAAGACAGTACTTATGAGAACGACGATTCCTCCACCCAAAAAAAGCCAAGAGTAAATTGGTATGATGGAGATGAGAATTTGCACAGGAAGTTTGTGGCAGCTGTTAACATTTTGGGCTATGAAAAGGCTGTTCCCAAAAAGATCCTTGATCTGATGAATGTTGAAGGTCTTACAAGAGAAAATGTGGCCAGCCATCTTCAGAAATACAGACAATACCTTAAAAAACTGTGTAGTGAGGAATCTGAGCAATGTAACAAGATGGGTGCATTTGGAGGTACACACACCTCCTTCAGGCCCATGGCATCACTCGATGGATTTTCAATGACTGGAACAGGAAGGCTCTCGAATGCTACATTCTCACAGTATCCCTCTCGAGAAATAGTTGGCCAATTAAACTCTACTGCTGGATTGAGCTTAAATGATATTGCGTCCTCTGGAATGATACAGTCCCATAAATTGAGTAACTCATTAAGTTTCATTGGAAAACCCCATCCACCTTTCTTCCACACAAACCAACCTCCGCACACATTCAATGGCATTTCAATGTCATTGGATCACATTCAGTTACACAGAGACAAACGCACTCTGTCATTTAAAGAATCTAATTTGATAAATGATGCCTCAAGTTTTACAGTTTCCACCAGCTTCCCTGATGCTGGAAGGGCTGTTGGTAGCTCAAGCAATTATGATTTCGGTGTTTCAAGCCATTCATTGATGTTACGAGAACATAAGCAACAGATTCATGGCGATGGAGAATTCGGAGGGCAGTCTTCTCTTAAGATAACTCTAGACAACCGAGAACCGTTAGACAGCGGCACAAGTGTTTCTAATATTTTGGGCCACAGTCAGTCTAACAAAAACTGGCCGGGTTCAATCCAGCTCCCCAAATTTTCATCTAATGTCTCGGTCACTGGAATTTACCCTCCTGATGGAATGCCCGGTACTTATTTGACAATTTCCTCAGCTCAGCCCGATAACGACAACTTTCCTGTTGGTTTTCCTTCAACAAGTGGGGATTCAAGTTCTCATCTTGATTTAAGAGGGGACACACAATGCTATGAAGAACTAATTGGTAGTGTTGTTGAAGCGACGAATGGAAGATCAAAACAACAATGGGAAGCAGCTAAACAGGATTACTATGGCAACCATAGTTCCGTTGTGAGGGACTCTTTTGTTTCTGGGAATAGTGTTGCAGATCCCTTGATCCAGAGTGCAAATCAGAACAATGCAATCTGTCTCGGAAACATGAGCAGCTCTTCGACCAACCAATTGAATATTGGTGCTCCAACCTTCATTCACGATGGTGTGGAAATATCTACAATGAACACTTGGATGAACTACGATGGGAAAATCCCCATGGATCAAACAAAGCTACAACATGGATTTTCAAGTTCTAGTTTCAATTCCTTGGATGAGTTGGTTAATGCTCTGTCGAAACAGGATCAAGATCAATCTATTCAAATAAATGGCGAATTTGGATTTGACGCACAATCTCTCGGCTCATCGTGTATATGA 2100 41.33 MTVEVRKTNLVGENDDMEQFPIGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENKNRFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSNTELVKKGVLHGACDYLLKPVRIEELKNIWQHVLRRKKPSVKNQNKSIIGNNTSQSVEVAKGCPPAVSTDNEKSGKRQKDQDDDEEGGEEDSTYENDDSSTQKKPRVNWYDGDENLHRKFVAAVNILGYEKAVPKKILDLMNVEGLTRENVASHLQKYRQYLKKLCSEESEQCNKMGAFGGTHTSFRPMASLDGFSMTGTGRLSNATFSQYPSREIVGQLNSTAGLSLNDIASSGMIQSHKLSNSLSFIGKPHPPFFHTNQPPHTFNGISMSLDHIQLHRDKRTLSFKESNLINDASSFTVSTSFPDAGRAVGSSSNYDFGVSSHSLMLREHKQQIHGDGEFGGQSSLKITLDNREPLDSGTSVSNILGHSQSNKNWPGSIQLPKFSSNVSVTGIYPPDGMPGTYLTISSAQPDNDNFPVGFPSTSGDSSSHLDLRGDTQCYEELIGSVVEATNGRSKQQWEAAKQDYYGNHSSVVRDSFVSGNSVADPLIQSANQNNAICLGNMSSSSTNQLNIGAPTFIHDGVEISTMNTWMNYDGKIPMDQTKLQHGFSSSSFNSLDELVNALSKQDQDQSIQINGEFGFDAQSLGSSCI* 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1638210 1643778 - CsaV3_2G003430.1 Csa02g00244 518301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00244 699 Gene3D - 24 184 - -
Csa02g00244 699 Gene3D - 206 272 - -
Csa02g00244 699 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 266 IPR006447 GO:0003677
Csa02g00244 699 SUPERFAMILY Homeodomain-like 208 270 IPR009057 -
Csa02g00244 699 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Csa02g00244 699 SMART REC_2 24 136 IPR001789 GO:0000160
Csa02g00244 699 MobiDBLite consensus disorder prediction 147 215 - -
Csa02g00244 699 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 - -
Csa02g00244 699 SUPERFAMILY CheY-like 23 148 IPR011006 -
Csa02g00244 699 CDD REC_typeB_ARR-like 26 140 - -
Csa02g00244 699 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 IPR045279 GO:0009736
Csa02g00244 699 MobiDBLite consensus disorder prediction 149 165 - -
Csa02g00244 699 PIRSF RR_ARR_type-B 1 699 IPR017053 GO:0003677|GO:0003700|GO:0009736
Csa02g00244 699 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02143 Csa-Chr1:18615302 Csa02g00244 Csa-Chr2:1638210 2.23E-56 dispersed
Csa02g00244 Csa-Chr2:1638210 Csa04g02646 Csa-Chr4:25830357 5.13E-139 dispersed
Csa05g00009 Csa-Chr5:54545 Csa02g00244 Csa-Chr2:1638210 2.76E-24 transposed
Csa01g01861 Csa-Chr1:15634051 Csa02g00244 Csa-Chr2:1638210 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30861 PF00072 Response_reg 2.40E-25 CL0304 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00244 K14491 - csv:101203718 1386.32