Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g00258 | ATGCATTGTGAATTCTTGCAGAATCAGATGGGGAATCCTGATAAGGAGTCTGCTTTAACTGGAACTAGCGACCGAACTCGCTCTGGAAATTCTTTTCCTCTAGAAAGCATTTCTGAGGATGCTGCAGTTATAGACAAGAAAGAGAACCCAACTACTTTTGCTCCAGCTCTTAGATCGGGGGAATGGTCCGACATTGGAAAGCGTCCTTATATGGAGGACACTCATGTATGCATTCATGACATGGCTAAGAAGTTTGGTTGTAGTTTTCTCAATGAGGAAGCTGTCTCCTTCTATGGTGTATTTGACGGACATGGAGGAAAAGGCGCTGCACAGTTTGTTCGTGACCACTTGCCAAGAGTCATTGTTGATGATTCCGACTTTCCTTTAGAGCTTGAAAAGGTTGTCACAAGGTCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCGTGAAACATCTCTATCTTCTGGCACAACTGCACTTACAGCCATGATATTTGGAAGGTCTTTGCTTGTAGCAAATGCTGGAGATTGCCGAGCAGTACTATCAAGACAAGGATGTGCAGTAGAAATGTCTAAAGATCATAGGCCTTGCTGCACAAAAGAAAGAAAGCGAATCGAGGCCTTAGGCGGATTCATCGACGACGATGAGTACCTAAACGGTCTGCTCGGAGTTACACGTGCTATAGGAGATTGGCATCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGTGGACCATTAAGCGCAGAACCTGAACTTAGATTAATGACATTAACAAAGGAAGACGAGTTCTTGATCATAGGTAGCGATGGAATATGGGATGTCTTTACAAGTCAAAATGCCATCGATTTTGCTCGGAGGAAGCTCCAAGAACACAATGATGTGAAAATTTGCTGCAAGGAAATAGTAGAGGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGTAGTATTGGTTAGCTTTCATTTGGAGCCTCCTCCACCGGTAGTTTTTCAAAGGCCAAGATTTAGAAGAAGCATTTCTGCTGAGGGACTTCAAAACCTCAAATGTCTTCTAGAAGGTTAG | 1074 | 43.02 | MHCEFLQNQMGNPDKESALTGTSDRTRSGNSFPLESISEDAAVIDKKENPTTFAPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGVFDGHGGKGAAQFVRDHLPRVIVDDSDFPLELEKVVTRSFMETDAAFARSCTRETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAVEMSKDHRPCCTKERKRIEALGGFIDDDEYLNGLLGVTRAIGDWHLEGMKEMSERGGPLSAEPELRLMTLTKEDEFLIIGSDGIWDVFTSQNAIDFARRKLQEHNDVKICCKEIVEEAIKRGATDNLTVVLVSFHLEPPPPVVFQRPRFRRSISAEGLQNLKCLLEG* | 358 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1753627 | 1759443 | - | CsaV3_2G003570.1 | Csa02g00258 | 518315 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g00258 | 357 | PANTHER | PROTEIN PHOSPHATASE 2C | 6 | 345 | IPR015655 | GO:0004722|GO:0006470 | |
Csa02g00258 | 357 | Pfam | Protein phosphatase 2C | 70 | 316 | IPR001932 | - | |
Csa02g00258 | 357 | SUPERFAMILY | PP2C-like | 51 | 325 | IPR036457 | - | |
Csa02g00258 | 357 | Gene3D | - | 40 | 327 | IPR036457 | - | |
Csa02g00258 | 357 | MobiDBLite | consensus disorder prediction | 10 | 33 | - | - | |
Csa02g00258 | 357 | CDD | PP2Cc | 58 | 324 | IPR001932 | - | |
Csa02g00258 | 357 | SMART | PP2C_4 | 48 | 322 | IPR001932 | - | |
Csa02g00258 | 357 | ProSiteProfiles | PPM-type phosphatase domain profile. | 58 | 324 | IPR001932 | - | |
Csa02g00258 | 357 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Csa02g00258 | 357 | ProSitePatterns | PPM-type phosphatase domain signature. | 97 | 105 | IPR000222 | GO:0043169 | |
Csa02g00258 | 357 | PANTHER | PROTEIN PHOSPHATASE 2C 27-RELATED | 6 | 345 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g00258 | Csa-Chr2:1753627 | Csa04g02719 | Csa-Chr4:26235116 | 5.65E-107 | dispersed | |
Csa03g01972 | Csa-Chr3:15565173 | Csa02g00258 | Csa-Chr2:1753627 | 3.90E-30 | dispersed | |
Csa07g02095 | Csa-Chr7:20212401 | Csa02g00258 | Csa-Chr2:1753627 | 5.39E-38 | dispersed | |
Csa02g00258 | Csa-Chr2:1753627 | Csa03g02203 | Csa-Chr3:19119262 | 1.06E-43 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30862 | PF00481 | PP2C | 1.10E-66 | CL0238 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g00258 | K14803 | - | csv:101210349 | 706.057 |