Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00258 ATGCATTGTGAATTCTTGCAGAATCAGATGGGGAATCCTGATAAGGAGTCTGCTTTAACTGGAACTAGCGACCGAACTCGCTCTGGAAATTCTTTTCCTCTAGAAAGCATTTCTGAGGATGCTGCAGTTATAGACAAGAAAGAGAACCCAACTACTTTTGCTCCAGCTCTTAGATCGGGGGAATGGTCCGACATTGGAAAGCGTCCTTATATGGAGGACACTCATGTATGCATTCATGACATGGCTAAGAAGTTTGGTTGTAGTTTTCTCAATGAGGAAGCTGTCTCCTTCTATGGTGTATTTGACGGACATGGAGGAAAAGGCGCTGCACAGTTTGTTCGTGACCACTTGCCAAGAGTCATTGTTGATGATTCCGACTTTCCTTTAGAGCTTGAAAAGGTTGTCACAAGGTCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCGTGAAACATCTCTATCTTCTGGCACAACTGCACTTACAGCCATGATATTTGGAAGGTCTTTGCTTGTAGCAAATGCTGGAGATTGCCGAGCAGTACTATCAAGACAAGGATGTGCAGTAGAAATGTCTAAAGATCATAGGCCTTGCTGCACAAAAGAAAGAAAGCGAATCGAGGCCTTAGGCGGATTCATCGACGACGATGAGTACCTAAACGGTCTGCTCGGAGTTACACGTGCTATAGGAGATTGGCATCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGTGGACCATTAAGCGCAGAACCTGAACTTAGATTAATGACATTAACAAAGGAAGACGAGTTCTTGATCATAGGTAGCGATGGAATATGGGATGTCTTTACAAGTCAAAATGCCATCGATTTTGCTCGGAGGAAGCTCCAAGAACACAATGATGTGAAAATTTGCTGCAAGGAAATAGTAGAGGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGTAGTATTGGTTAGCTTTCATTTGGAGCCTCCTCCACCGGTAGTTTTTCAAAGGCCAAGATTTAGAAGAAGCATTTCTGCTGAGGGACTTCAAAACCTCAAATGTCTTCTAGAAGGTTAG 1074 43.02 MHCEFLQNQMGNPDKESALTGTSDRTRSGNSFPLESISEDAAVIDKKENPTTFAPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGVFDGHGGKGAAQFVRDHLPRVIVDDSDFPLELEKVVTRSFMETDAAFARSCTRETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAVEMSKDHRPCCTKERKRIEALGGFIDDDEYLNGLLGVTRAIGDWHLEGMKEMSERGGPLSAEPELRLMTLTKEDEFLIIGSDGIWDVFTSQNAIDFARRKLQEHNDVKICCKEIVEEAIKRGATDNLTVVLVSFHLEPPPPVVFQRPRFRRSISAEGLQNLKCLLEG* 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1753627 1759443 - CsaV3_2G003570.1 Csa02g00258 518315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00258 357 PANTHER PROTEIN PHOSPHATASE 2C 6 345 IPR015655 GO:0004722|GO:0006470
Csa02g00258 357 Pfam Protein phosphatase 2C 70 316 IPR001932 -
Csa02g00258 357 SUPERFAMILY PP2C-like 51 325 IPR036457 -
Csa02g00258 357 Gene3D - 40 327 IPR036457 -
Csa02g00258 357 MobiDBLite consensus disorder prediction 10 33 - -
Csa02g00258 357 CDD PP2Cc 58 324 IPR001932 -
Csa02g00258 357 SMART PP2C_4 48 322 IPR001932 -
Csa02g00258 357 ProSiteProfiles PPM-type phosphatase domain profile. 58 324 IPR001932 -
Csa02g00258 357 MobiDBLite consensus disorder prediction 1 33 - -
Csa02g00258 357 ProSitePatterns PPM-type phosphatase domain signature. 97 105 IPR000222 GO:0043169
Csa02g00258 357 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 6 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00258 Csa-Chr2:1753627 Csa04g02719 Csa-Chr4:26235116 5.65E-107 dispersed
Csa03g01972 Csa-Chr3:15565173 Csa02g00258 Csa-Chr2:1753627 3.90E-30 dispersed
Csa07g02095 Csa-Chr7:20212401 Csa02g00258 Csa-Chr2:1753627 5.39E-38 dispersed
Csa02g00258 Csa-Chr2:1753627 Csa03g02203 Csa-Chr3:19119262 1.06E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30862 PF00481 PP2C 1.10E-66 CL0238 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00258 K14803 - csv:101210349 706.057