Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00266 ATGCATTCAGACATTTTCGACGGTGAAGTCTACAAATACTATTCAGAAGGTGAATGGAAGAAATCCTCCTCAGGGAAATCCGTTGCCATCATCAACCCCACTACTAGGAAGACCCAGTACAGAGTTCAAGCTTGTAACCAAGAGGAGGTTAATAAAGTGATGGAAATAGCCAAATCTGCTCAGAAATTATGGGCAAAGACTCCATTGTGGAAGAGAGCAGAGCTTCTTCATAAAGCTGCTGCAATTTTGAAAGAACACAAAGCTCCCATTGCTGAGTGTTTGGTGAAGGAAATTGCTAAACCAGCCAAAGATGCAGTCACTGAGGTTGTGAGGTCTGGGGATCTTGTTTCATATTGTGCTGAAGAAGGTGTTAGGATTTTGGGTGAAGGGAAGTTCTTGGTTTCTGATAGTTTCCCTGGAAATGAAAGGACCAAATATTGCCTTACTTCCAAGATCCCTCTTGGTGTGATTTTAGCCATTCCTCCATTCAACTATCCTGTCAATCTGGCTGTTTCAAAAATTGCCCCGGCTTTAATTGCTGGAAATTCTATTGTACTCAAGCCTCCAACTCAGGGCGCTGTTGCTGCTCTCCACATGGTACATTGCTTCCATCTAGCTGGTTTTCCTAAAGGCCTTATTAGTTGTGTCACGGGAAAAGGTTCCGAGATTGGTGATTTCCTCACAATGCATCCGGGTGTCGACTGTATAAGCTTTACTGGTGGGGATACCGGTGTTGCAATTTCAAAGAAGGCAGGCATGATACCTCTTCAGATGGAACTGGGGGGCAAAGACGCCTGCATTGTGCTCGAGGATGCAGATCTTGATTTAGTTGCCGCTAACATCATAAAGGGAGGCTTTTCTTACAGTGGCCAAAGGTGTACTGCCGTCAAGGTTGTTTTGGTAATGGAATCTGTCGCAGATGCTTTAGTCGAGAAAGTAAAGGCACGAGTGGCTAAATTAACTGTTGGTGCCCCTGAAGACGACTCGGACATTACTCCAGTTGTGACTGAGTCATCGGCAAACTTCATTGAAGGACTGGTTATGGATGCAAAGGAAAAGGATGCAACATTTTGCCAAGAGTACAAAAGAGAGGGCAACCTAATTTGGCCCTTGTTATTAGATAATGTTAGGCCTGATATGAGGATTGCTTGGGAGGAACCTTTTGGCCCAGTTTTGCCAGTCATTAGGATCAATTCTGTTGAAGAAGGAATCCACCATTGTAATGCTAGCAATTTTGGACTTCAGGGATGTGTCTTCACGAAGGACATCAACAAGGCGATATTGATAAGCGACGCAATGGAAACCGGAACAGTTCAAATCAACTCAGCACCTGCTCGAGGACCCGACCATTTCCCATTCCAGGGAATCAAGGACAGTGGAATTGGTTCTCAAGGTGTTACTAACAGCATCAACATGATGACCAAAGTGAAGACCACAGTTATCAACTTGCCAACACCGTCCTACACCATGGGGACCAAGTCCATTAGTAAGGGAGCCCTAGGGTCCAAATTGTGA 1515 44.82 MHSDIFDGEVYKYYSEGEWKKSSSGKSVAIINPTTRKTQYRVQACNQEEVNKVMEIAKSAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVDCISFTGGDTGVAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKARVAKLTVGAPEDDSDITPVVTESSANFIEGLVMDAKEKDATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGVTNSINMMTKVKTTVINLPTPSYTMGTKSISKGALGSKL* 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1824868 1830338 + CsaV3_2G003650.1 Csa02g00266 518323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00266 504 PANTHER ALDEHYDE DEHYDROGENASE 3 491 - -
Csa02g00266 504 Pfam Aldehyde dehydrogenase family 19 478 IPR015590 GO:0016491
Csa02g00266 504 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 17 478 IPR016162 GO:0016491
Csa02g00266 504 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 262 452 IPR016163 GO:0016620
Csa02g00266 504 SUPERFAMILY ALDH-like 10 482 IPR016161 GO:0016491
Csa02g00266 504 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 258 265 IPR029510 GO:0016491
Csa02g00266 504 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 286 297 IPR016160 GO:0016491
Csa02g00266 504 CDD ALDH_F11_NP-GAPDH 10 482 - -
Csa02g00266 504 PANTHER NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 3 491 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00266 K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9] - csv:101208699 959.518
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00266 Csa-Chr2:1824868 Csa06g01146 Csa-Chr6:9553079 3.22E-58 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g02053 . 11 508 Aldehyde Dehydrogenase Gene Family AT3G24503 71.0 7.5e-212 733.4
Csa02g00312 . 56 541 Aldehyde Dehydrogenase Gene Family AT3G24503 54.4 2.8e-158 555.4
Csa01g00160 . 64 549 Aldehyde Dehydrogenase Gene Family AT3G24503 54.8 3.2e-154 542.0
Csa01g00160 . 4 549 Aldehyde Dehydrogenase Gene Family AT3G48000 78.2 2.2e-254 874.8
Csa02g00312 . 1 541 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 1.8e-248 855.1
Csa01g02053 . 23 508 Aldehyde Dehydrogenase Gene Family AT3G48000 54.9 2.5e-160 562.4
Csa02g00312 . 1 390 Aldehyde Dehydrogenase Gene Family AT1G23800 75.4 3.4e-170 594.7
Csa01g00160 . 4 392 Aldehyde Dehydrogenase Gene Family AT1G23800 74.4 1.7e-166 582.4
Csa01g02053 . 23 351 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 1.5e-101 366.7
Csa04g01789 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.8 1.8e-179 625.9
Csa04g01789 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.3 1.6e-178 622.5
Csa04g01412 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.5 2.6e-117 419.1
Csa04g00526 . 61 475 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 3.6e-114 408.7
Csa04g00526 . 1 478 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 4.6e-182 634.4
Csa04g01412 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.8 8.4e-160 560.5
Csa06g01146 . 37 542 Aldehyde Dehydrogenase Gene Family AT1G79440 76.9 5.6e-234 807.0
Csa07g00612 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 81.5 1.2e-235 812.8
Csa06g03100 . 197 665 Aldehyde Dehydrogenase Gene Family AT2G14170 63.4 7.1e-177 617.5
Csa01g00183 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.6 8.1e-251 862.8
Csa01g00183 . 1 504 Aldehyde Dehydrogenase Gene Family AT3G48170 81.0 1.4e-253 872.1
Csa02g00266 . 1 497 Aldehyde Dehydrogenase Gene Family AT2G24270 89.5 2.2e-264 907.9
Csa01g00788 . 21 556 Aldehyde Dehydrogenase Gene Family AT5G62530 77.3 4.5e-258 887.1
Csa06g01741 . 1 600 Aldehyde Dehydrogenase Gene Family AT3G66658 74.2 1.9e-270 928.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005298 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00266 Csa_Chr02 FPKM 7.089324 9.458834 5.313592 3.872039 11.134946 10.692513 10.727621 5.396228 6.152216 3.372567