Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00267 ATGAGACTCACCAACTCTCTCCCGGACCTCCATACCCATCGCCGTAACCCTCCGCAGGAGACCGACGCCTCTCAACTCCACCACCACCACCACCAACTTCAAACCTCTCTCTTTCATCCTTCTACCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCACTGTCCCCTCTCCCTGGGAACTTCCCCCCGGTCTCCCTTCCCAACCATTGCCGCCATCTAATCCTGACAATGTTGAGTTTCACGTCGGCGATACAACTCCGGCGGCTAAAATGGCCATGTCCTTGCTTCAACAGCAGTTACTCATGTCGAGAGGAATCGTCCCTGCCTCCGCTGGCGATGATTGCGGTCTTCTTCCAATGCCTGGTAACAACGTCGTTGAAGTAGACGGCTCTTCTTCTTCGTCTTTCAAATGCCCTAATCCGACTGATCATGGTTCTGTCGTTCCTTCTCTTTTCAACGAATTCGCCGGGTTTCTGAACTCGACCGGTCCCGGCAGCCAGAATCAGAATCAATCTCAGGGGAACTCAAACTCTCAGATACCGAACTTCGGAGGTCCGGTATCAGCCAGTACACCACCTCCGGCCGGGCCTAGCTCCTGCGGCGGTGCTGCAGCAGCAGCAGCACCGGGTCAGCCCCGGCAGCGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCATAGTATAGCCGAAAGATTACGGAGAGAGCGAATTGCGGAGAGAATGAAAGCTCTACAAGAACTTGTTCCCAACGCTAACAAGACAGACAAGGCTTCTATGCTGGATGAGATCATAGACTATGTAAAGTTCCTCCAGCTTCAAGTCAAAGTTCTGAGTGTCAGCAGGTTGGGCGGTGCCACTGCAGCCATGCCTTCTCGTCTACCCGATCTTTCCACTGAGGGTGGCACTGAGTGCAACCAGTCCAACGGAACTAATGGGGCCAGTGGGCAGACTTCCACCGGAGCTCCGTCGAGTAATGACGCGATGACGGTGACGGAGCACCAGGTTGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTCTGCCTCATGCCCATTTCTCTCGCCACCGCTATCTCCACCGCTACATGTCACAGCCGCCCAATCACGGCGTCCAAGGGCGGAGGAGATCCCCCCACCTCTCCCAGCCTTTCGGCGTTGACCGTCCAGTCAACTGCCTTGGGTAACGGCACCGTCGACAAACCCGTCAGAGACACCCTCTCCGTTTCCCGGCCGTGA 1266 55.77 MRLTNSLPDLHTHRRNPPQETDASQLHHHHHQLQTSLFHPSTFSSDDFLDQILSTVPSPWELPPGLPSQPLPPSNPDNVEFHVGDTTPAAKMAMSLLQQQLLMSRGIVPASAGDDCGLLPMPGNNVVEVDGSSSSSFKCPNPTDHGSVVPSLFNEFAGFLNSTGPGSQNQNQSQGNSNSQIPNFGGPVSASTPPPAGPSSCGGAAAAAAPGQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSRLPDLSTEGGTECNQSNGTNGASGQTSTGAPSSNDAMTVTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRPITASKGGGDPPTSPSLSALTVQSTALGNGTVDKPVRDTLSVSRP* 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1833037 1837221 + CsaV3_2G003660.1 Csa02g00267 518324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00267 421 MobiDBLite consensus disorder prediction 300 330 - -
Csa02g00267 421 PANTHER TRANSCRIPTION FACTOR BHLH69 40 382 - -
Csa02g00267 421 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 223 272 IPR011598 GO:0046983
Csa02g00267 421 MobiDBLite consensus disorder prediction 159 231 - -
Csa02g00267 421 MobiDBLite consensus disorder prediction 378 421 - -
Csa02g00267 421 Pfam Helix-loop-helix DNA-binding domain 228 273 IPR011598 GO:0046983
Csa02g00267 421 SMART finulus 229 278 IPR011598 GO:0046983
Csa02g00267 421 MobiDBLite consensus disorder prediction 159 187 - -
Csa02g00267 421 MobiDBLite consensus disorder prediction 385 406 - -
Csa02g00267 421 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 221 281 IPR036638 GO:0046983
Csa02g00267 421 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 382 - -
Csa02g00267 421 MobiDBLite consensus disorder prediction 295 330 - -
Csa02g00267 421 MobiDBLite consensus disorder prediction 7 29 - -
Csa02g00267 421 Gene3D - 218 280 IPR036638 GO:0046983
Csa02g00267 421 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00628 Csa-Chr1:4002735 Csa02g00267 Csa-Chr2:1833037 3.44E-08 dispersed
Csa02g00267 Csa-Chr2:1833037 Csa07g01674 Csa-Chr7:17195587 1.12E-48 dispersed
Csa04g02472 Csa-Chr4:24696914 Csa02g00267 Csa-Chr2:1833037 2.64E-20 dispersed
Csa02g00267 Csa-Chr2:1833037 Csa01g01870 Csa-Chr1:15708212 1.24E-112 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30864 PF00010 HLH 1.60E-09 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00267 - - csv:101222794 727.243