Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g00267 | ATGAGACTCACCAACTCTCTCCCGGACCTCCATACCCATCGCCGTAACCCTCCGCAGGAGACCGACGCCTCTCAACTCCACCACCACCACCACCAACTTCAAACCTCTCTCTTTCATCCTTCTACCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCACTGTCCCCTCTCCCTGGGAACTTCCCCCCGGTCTCCCTTCCCAACCATTGCCGCCATCTAATCCTGACAATGTTGAGTTTCACGTCGGCGATACAACTCCGGCGGCTAAAATGGCCATGTCCTTGCTTCAACAGCAGTTACTCATGTCGAGAGGAATCGTCCCTGCCTCCGCTGGCGATGATTGCGGTCTTCTTCCAATGCCTGGTAACAACGTCGTTGAAGTAGACGGCTCTTCTTCTTCGTCTTTCAAATGCCCTAATCCGACTGATCATGGTTCTGTCGTTCCTTCTCTTTTCAACGAATTCGCCGGGTTTCTGAACTCGACCGGTCCCGGCAGCCAGAATCAGAATCAATCTCAGGGGAACTCAAACTCTCAGATACCGAACTTCGGAGGTCCGGTATCAGCCAGTACACCACCTCCGGCCGGGCCTAGCTCCTGCGGCGGTGCTGCAGCAGCAGCAGCACCGGGTCAGCCCCGGCAGCGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCATAGTATAGCCGAAAGATTACGGAGAGAGCGAATTGCGGAGAGAATGAAAGCTCTACAAGAACTTGTTCCCAACGCTAACAAGACAGACAAGGCTTCTATGCTGGATGAGATCATAGACTATGTAAAGTTCCTCCAGCTTCAAGTCAAAGTTCTGAGTGTCAGCAGGTTGGGCGGTGCCACTGCAGCCATGCCTTCTCGTCTACCCGATCTTTCCACTGAGGGTGGCACTGAGTGCAACCAGTCCAACGGAACTAATGGGGCCAGTGGGCAGACTTCCACCGGAGCTCCGTCGAGTAATGACGCGATGACGGTGACGGAGCACCAGGTTGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTCTGCCTCATGCCCATTTCTCTCGCCACCGCTATCTCCACCGCTACATGTCACAGCCGCCCAATCACGGCGTCCAAGGGCGGAGGAGATCCCCCCACCTCTCCCAGCCTTTCGGCGTTGACCGTCCAGTCAACTGCCTTGGGTAACGGCACCGTCGACAAACCCGTCAGAGACACCCTCTCCGTTTCCCGGCCGTGA | 1266 | 55.77 | MRLTNSLPDLHTHRRNPPQETDASQLHHHHHQLQTSLFHPSTFSSDDFLDQILSTVPSPWELPPGLPSQPLPPSNPDNVEFHVGDTTPAAKMAMSLLQQQLLMSRGIVPASAGDDCGLLPMPGNNVVEVDGSSSSSFKCPNPTDHGSVVPSLFNEFAGFLNSTGPGSQNQNQSQGNSNSQIPNFGGPVSASTPPPAGPSSCGGAAAAAAPGQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSRLPDLSTEGGTECNQSNGTNGASGQTSTGAPSSNDAMTVTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRPITASKGGGDPPTSPSLSALTVQSTALGNGTVDKPVRDTLSVSRP* | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1833037 | 1837221 | + | CsaV3_2G003660.1 | Csa02g00267 | 518324 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g00267 | 421 | MobiDBLite | consensus disorder prediction | 300 | 330 | - | - | |
Csa02g00267 | 421 | PANTHER | TRANSCRIPTION FACTOR BHLH69 | 40 | 382 | - | - | |
Csa02g00267 | 421 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 223 | 272 | IPR011598 | GO:0046983 | |
Csa02g00267 | 421 | MobiDBLite | consensus disorder prediction | 159 | 231 | - | - | |
Csa02g00267 | 421 | MobiDBLite | consensus disorder prediction | 378 | 421 | - | - | |
Csa02g00267 | 421 | Pfam | Helix-loop-helix DNA-binding domain | 228 | 273 | IPR011598 | GO:0046983 | |
Csa02g00267 | 421 | SMART | finulus | 229 | 278 | IPR011598 | GO:0046983 | |
Csa02g00267 | 421 | MobiDBLite | consensus disorder prediction | 159 | 187 | - | - | |
Csa02g00267 | 421 | MobiDBLite | consensus disorder prediction | 385 | 406 | - | - | |
Csa02g00267 | 421 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 221 | 281 | IPR036638 | GO:0046983 | |
Csa02g00267 | 421 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 40 | 382 | - | - | |
Csa02g00267 | 421 | MobiDBLite | consensus disorder prediction | 295 | 330 | - | - | |
Csa02g00267 | 421 | MobiDBLite | consensus disorder prediction | 7 | 29 | - | - | |
Csa02g00267 | 421 | Gene3D | - | 218 | 280 | IPR036638 | GO:0046983 | |
Csa02g00267 | 421 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00628 | Csa-Chr1:4002735 | Csa02g00267 | Csa-Chr2:1833037 | 3.44E-08 | dispersed | |
Csa02g00267 | Csa-Chr2:1833037 | Csa07g01674 | Csa-Chr7:17195587 | 1.12E-48 | dispersed | |
Csa04g02472 | Csa-Chr4:24696914 | Csa02g00267 | Csa-Chr2:1833037 | 2.64E-20 | dispersed | |
Csa02g00267 | Csa-Chr2:1833037 | Csa01g01870 | Csa-Chr1:15708212 | 1.24E-112 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30864 | PF00010 | HLH | 1.60E-09 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g00267 | - | - | csv:101222794 | 727.243 |