Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00268 ATGGCGGATAAAGGCAGAGACGGCGGTCATTCAAGTTTACTCGACGGGAAGTACGAATTAGGCCGTCTTCTAGGACATGGTACCTTCGCTAAGGTTTATCATGCTCGGAATTTGAGGACGGGGAAGAGTGTTGCGATGAAAGTGGTTGGGAAGGAGAAGATAATCAAAGTCGGTATGATGGAGCAGATCAAGAGAGAAATCTCTGTGATGAAAATGGTGAAGCATCCGAATATTGTGGAGCTTCATGAGGTAATGGCGAGTAAATCGAAGATCTATTTCGCTATGGAGTTTGTTAGAGGCGGTGAACTGTTCTCCAAAATCGCGAAAGGTCGGCTACGAGAGGATGTAGCTAGAGTTTACTTTCAACAATTAATCTCTGCAATCGATTTCTGCCATAGCCGTGGAGTTTACCACCGTGATCTAAAACCGGAAAATCTCCTTCTCGATGAAGACGGTAACCTTAAGGTAACCGATTTCGGCCTCACCGCTTTCTCCGAGCACTTGAAGCAAGACGGATTGTTGCATACAACGTGCGGCACTCCGGCGTACGTCGCACCAGAGGTAATCGGAAAACATGGATACGACGGCGCCAAGGCCGACCTGTGGTCATGTGGAGTCATCCTGTACGTTCTTCTCGCCGGATTCCTTCCATTCCAAGACGACAACATGGTGGCCATGTACAGGAAGATTTACAGAGGCGACTTCAAATGTCCGTCGTGGTTCTCCCCTGAAGCCCGTCGGCTCATCACGAAGCTGCTAGATCCAAATCCCGTGACCAGAGCCGGTATCACGAAGATTACATCCTCGTCTTGGTTCAAGAAATCAGTACCAAAAAGTCTGATTACGAAGGATGAACAAGAACAAACAGAGGAGAATTTCACAAAATCAAAGCCACCGGCGGAAACATTAAACGCGTTCCACATAATATCTCTATCGGAAGGGTTTGATCTATCGCCATTGTTTGAAGAGAAGAAAAGGGAGGAGAAAGAGGAGATGAGATTCGCAACATCGTCGACGGCGAGCAGTGTAATATCTAAGCTTGAGGAAGTGGGGAAGGCGGTGAAGTTCGATGTGAAGAAGAGCGAAACATGGGTTAGATTGCAGGGGCAGGAGATGGGGAGAAAAGGGAAACTGACAATTGCGGCGGACATCTTTGCTATGACGCCGTCGTTTGTGGTGGTGGAGGTGAAGAAGGATAACGGAGATACATTGGAGTATAATCAGTTCTGTAGGAAGGAGCTCCGGCCGGCATTGAAGGACATTGTTTGGACTTCTCCGACGGGGAATTCAACGCCAGCTTGA 1302 48.08 MADKGRDGGHSSLLDGKYELGRLLGHGTFAKVYHARNLRTGKSVAMKVVGKEKIIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMEFVRGGELFSKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKHGYDGAKADLWSCGVILYVLLAGFLPFQDDNMVAMYRKIYRGDFKCPSWFSPEARRLITKLLDPNPVTRAGITKITSSSWFKKSVPKSLITKDEQEQTEENFTKSKPPAETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFATSSTASSVISKLEEVGKAVKFDVKKSETWVRLQGQEMGRKGKLTIAADIFAMTPSFVVVEVKKDNGDTLEYNQFCRKELRPALKDIVWTSPTGNSTPA* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1847249 1849243 - CsaV3_2G003670.1 Csa02g00268 518325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00268 433 Gene3D Transferase(Phosphotransferase) domain 1 98 298 - -
Csa02g00268 433 Gene3D Phosphorylase Kinase; domain 1 13 97 - -
Csa02g00268 433 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 10 430 - -
Csa02g00268 433 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Csa02g00268 433 Pfam NAF domain 301 360 IPR004041 GO:0007165
Csa02g00268 433 CDD STKc_SnRK3 17 271 - -
Csa02g00268 433 PANTHER - 10 430 - -
Csa02g00268 433 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00268 433 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00268 433 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165
Csa02g00268 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Csa02g00268 433 CDD CIPK_C 304 419 - -
Csa02g00268 433 SUPERFAMILY Protein kinase-like (PK-like) 15 288 IPR011009 -
Csa02g00268 433 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00268 433 Gene3D Kinase associated domain 1, KA1 299 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02318 Csa-Chr1:20282952 Csa02g00268 Csa-Chr2:1847249 0 dispersed
Csa02g00268 Csa-Chr2:1847249 Csa06g03710 Csa-Chr6:29666281 0 dispersed
Csa06g01609 Csa-Chr6:13847653 Csa02g00268 Csa-Chr2:1847249 5.82E-147 dispersed
Csa02g00268 Csa-Chr2:1847249 Csa01g01874 Csa-Chr1:15751776 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77872 PF00069 Pkinase 1.80E-72 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00268 - K07198 csv:101208458 857.055