Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00279 ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCATCAACACCACCATCAAACTCCCACCACCACATCGCCGACCAATGGCCTTCTTCCACCTACCCACCACCTCTCCGCCGCCGCTGCCTCCTCCGACGCCGGTCCTCATGTTGTATACCCTCACTCCGTCCCTTCCGCCGCCGTCTCTTCTTCTCCTCTTGAGCCCGCACGTCGGAAGAGAGGTCGGCCGAGGAAGTACGGAACACCGGAGGAAGCTTTAGCGGCTAAGAAAGCTGCTACGGCCTCGTCTCACTCTTCGTCTTCTAAGGCCAAGAAGGAACTCGCTTCTTCTTCTTCTCTTAATGCCGTTTCCGCTTCTTCTTCCTTCTCAACGCCTTCTAAGAAATCTCAGTTGGCTGCACTTGGTAATGCAGGCCAAGGTTTTGCGCCACATGTTATTAATGTTGCAGCTGGTGAGGATGTGGGCCAGAAAATTATGCAGTTTATGCAACAATGTAAGCGGGAAATTTGTATCCTTTCTGCATCTGGTTCGATCTCCAATGCATCTCTCCGTCAGCCAGCCGCATCAGGAGGCAATATTGCATATGAGGGACGTTTTGAGATTGTTTCATTATGCGGATCTTATGTACGAACTGACCTTGGAGGAAAGACTGGTGGTCTTAGTGTATGTCTGTCAAGTGCTGAAGGGCATATCATAGGAGGGGGAGTTGGTGGACCATTGAAGGCTGCTGGACCCGTGCAGGTTATTGTTGGAACCTTTGTTATCGACCCAAAGAAAGAATTTGGTGGTGGTAAAGGTGATGGATCTGCTGTCAAGTTGCCCTCACCTATTGGTGGGACATCAATGTCAAATCTACGCTATGGCTCCAACATTGACTCTGGAGGTAATCAAATAAGGGGAAATGATGAACACCAAGGTCTTGGGGAGAGTCATTTTTTGCTTCAGCCTCGGGGAGTGAATCTGACATCACCACGATCAACGGATTGGAGGACGGGTCTGGATGCCACAAACACTGCTTATGATTTGTCAGGAAGAACAGGCCATCATTCTCCTGAAAACGGAGATTACGATCAGATTCCTGATTGA 1089 49.77 MEPNENQLSSYFHHHQHHHQTPTTTSPTNGLLPPTHHLSAAAASSDAGPHVVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELASSSSLNAVSASSSFSTPSKKSQLAALGNAGQGFAPHVINVAAGEDVGQKIMQFMQQCKREICILSASGSISNASLRQPAASGGNIAYEGRFEIVSLCGSYVRTDLGGKTGGLSVCLSSAEGHIIGGGVGGPLKAAGPVQVIVGTFVIDPKKEFGGGKGDGSAVKLPSPIGGTSMSNLRYGSNIDSGGNQIRGNDEHQGLGESHFLLQPRGVNLTSPRSTDWRTGLDATNTAYDLSGRTGHHSPENGDYDQIPD* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1909716 1915237 + CsaV3_2G003780.1 Csa02g00279 518336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00279 362 CDD DUF296 144 254 IPR005175 -
Csa02g00279 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 1 353 - -
Csa02g00279 362 Gene3D - 144 263 - -
Csa02g00279 362 MobiDBLite consensus disorder prediction 1 106 - -
Csa02g00279 362 MobiDBLite consensus disorder prediction 340 362 - -
Csa02g00279 362 ProSiteProfiles PPC domain profile profile. 138 278 IPR005175 -
Csa02g00279 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 144 255 IPR005175 -
Csa02g00279 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 353 IPR039605 GO:0003680
Csa02g00279 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 141 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00279 Csa-Chr2:1909716 Csa06g02206 Csa-Chr6:19888856 6.78E-48 dispersed
Csa02g00279 Csa-Chr2:1909716 Csa05g00288 Csa-Chr5:1809144 1.26E-44 transposed
Csa02g00279 Csa-Chr2:1909716 Csa05g00539 Csa-Chr5:3452950 8.71E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00279 - - csv:101221844 587.8