Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00284 ATGATGGCAAACCGGTGGTGGACCTCCGGCCAGATGGGTCTTCCCGGAGTTGATCATACTTCAACAAGCTCCTCTGCTATGAGAAAACCAGATCTGGGAATCTCCATGAACGACAACGGTGGTCCTGTTCACAGTGGTGGTGATGACGATGACGATAGGGATAACGGTGGGGATGAACCTAAAGAAGGAGCAGTTGAGGTTCCAACGCGTCGTCCCCGTGGCCGACCGCCGGGATCCAAGAATAAGCCTAAGCCACCTATCTTTGTTACTAGAGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAGATTTCTAATGGAGCTGATATTGCCGAGAGCGTTGCTCAATTCGCTCGACGGCGACAGAGAGGTGTTTCTGTACTTAGTGGTAGCGGTACGGTTACAAATGTCACACTCCGACAACCGTCTGCGCCTGGTGCAGTCTTAGCCCTCCAGGGACGATTCGAGATACTTTCTTTAACTGGAACTTTCCTCCCTGGACCAGCCCCACCTGGCTCAACCGGACTAACGATCTACTTGGCTGGTGGACAAGGGCAAGTGGTGGGTGGCAGCGTCGTCGGGCCACTCACCGCTGCTGGCCCAGTGATGGTGATTGCTGCAACATTTTCCAACGCAACATACGAAAGATTACCCTTAGAAGAGGAAGAAGAAGGCGGCGGAGTAGGAGCACAAGGGCACACATCGGCAGGCGGTGGCGGCGCAGGCGACGGTTCACCACAAGGCATCGGAGGCGGAGTCGGGGACCCATCAGCTATGACTCCACTGTACAATTTACCACCAAATTTACTACCGAATGGTGGCGGAGGGCAGTTGAACCAAGAGGCCTATTCTTGGGCTCACGGCGGCCGGCCGTCATTTTAA 882 54.31 MMANRWWTSGQMGLPGVDHTSTSSSAMRKPDLGISMNDNGGPVHSGGDDDDDRDNGGDEPKEGAVEVPTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEISNGADIAESVAQFARRRQRGVSVLSGSGTVTNVTLRQPSAPGAVLALQGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEEGGGVGAQGHTSAGGGGAGDGSPQGIGGGVGDPSAMTPLYNLPPNLLPNGGGGQLNQEAYSWAHGGRPSF* 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1943318 1945136 - CsaV3_2G003830.1 Csa02g00284 518341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00284 293 MobiDBLite consensus disorder prediction 1 94 - -
Csa02g00284 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 292 IPR014476 GO:0003680
Csa02g00284 293 MobiDBLite consensus disorder prediction 14 30 - -
Csa02g00284 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 211 IPR005175 -
Csa02g00284 293 ProSiteProfiles PPC domain profile profile. 94 232 IPR005175 -
Csa02g00284 293 Gene3D - 98 224 - -
Csa02g00284 293 PIRSF ESCAROLA 11 293 IPR014476 GO:0003680
Csa02g00284 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 8 292 - -
Csa02g00284 293 MobiDBLite consensus disorder prediction 220 293 - -
Csa02g00284 293 MobiDBLite consensus disorder prediction 44 69 - -
Csa02g00284 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 222 - -
Csa02g00284 293 CDD DUF296 98 181 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00284 Csa-Chr2:1943318 Csa03g01009 Csa-Chr3:8151266 2.49E-79 dispersed
Csa02g00284 Csa-Chr2:1943318 Csa03g01238 Csa-Chr3:9482124 4.38E-88 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00284 - - csv:101220902 469.544