Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00299 ATGAATGCCAATACCCATGTGATGTTATCTCTTTTCTTCGTCTTGCTAGGGATTTTTAATCGCGTTTATTCTGCCTCTGTTCTTGATCCACCTCCAGATCCGCCATTGTTATTACGTTGTGGTTCTAATGAGGAAGGCAATGATGAAAATGGCCGAAAATGGATCTCTGATTCTAAATTCCTCGACCCCAAAAACACCCTAGCCGCACCGGTTGGATTTCAAGATCCATCCATGACTTCTCAGGTTCCGTATATGGAAGCTCGGGTTTTCACCGCCGTCACGGCGTATAAATTCCCGATCAAACGCGATAATCGTTATTGGCTTCGACTTCATTTTTACCCTTCCACATACGGACCTCATGATTCTGTGAATTCTTATTTCACCGTCACCGCGAACGATTTGACTCTTGTGAAGAATTTTAGTGCTTATATGACTTGTCAAGCCTTCACTCAGGCCTACATTGTTCGTGAATTTACACTCGCAGCTACAGAATCTGAATCTTTGAATCTGACTTTCACTCCTGTTTCTGGGTTTGCTTTTGTTAATGGGATTGAATTGGTTCAAATGCCGGAGATCTTTGGGGAAGCTATAATGGTGGGTGCAAGGGAGCAAACTATGGATGTAACGGGGTCGAGTATGCAAACAATTGCGAGATTGAACGTTGGTGGGAGCTACATTTCTCCAGCAAACGATTCTGGTTTGAGTAGAGCATGGTATGATGATTATCCTTATCTTTTTGGTGCTTCTGAGGGTGTTGTGCTGGAAGCTTCAAAGAGGTTGGTGATTGATTATAAAGATATGCCAAAGTATATTGGACCTGTGGAAATTTACAGGACATTGAGATCGATGGGAACATCCAAGGATGTGAATGCTAATTACAATTTGACGTGGTTGTTTCCTAATATTGATCCAGGGTTTATGTATCTTGTGAGGTTGCATTTTTGTGATGTGTCTTTGAGTAGGCCAAATCAGGTGGTGTTTGATGTGTTCATCAACAATCAAACTGCGGATGTGAATGGGATCGATGTGATAGCTTGGGCGGGTTCTAGGGGGGTTCCCAAATATAGGGATTATGTTGTGTTTTCTAATGAATCACCAACAATGCAGCAGATTTGGCTGGCAATGCATCCTAAGATGTCGGATGCACCTGAATTTGCAGATGCTATGTTGAATGGGGTCGAGATCTTCAAGCTCGATTCTGGGAAGAACTTGGCAGGGAAGAATCCTCAACCCTCAGCCTTTAGGATGAAGGTTGAGGCTGAATCAGAGAGGAATTTTGAAGGAAAGGGCAACAATGCTGAAGTGATTGGTGGGGCTGCAGGGGGTGCTGCTGCTTTTGTTGTGGTTGCACTTTGCTTTGCAGTGTACCAAAGGAAGAATAGACTGCCTGGGAATGATTCACACACAACTAGTTGGCTACCAATCTATGGGAATTCACATTCGAGTGGGAGCAAATCAACCGTGTCTGGTAAGAGTACGGCGAGTAATTTGGCTCAAGGTTTGGCTCGACATTTCTCACTTTCCGAGATTTTACATGCTACCAAGAGCTTTAGTGAATCTAATGTGATTGGGGTTGGAGGATTTGGGAAGGTGTACAAGGGAGTGATTGATGGAGGGACAAAAGTTGCTATTAAAAGGTCAAACCCATCATCAGAACAAGGAGTTCACGAGTTCCTTACGGAAATCGATTTGCTTTCAAAGCTGAGGCACAAACATTTGGTGTCCTTGATTGGTTTTTGTGATGAAGAGAATGAGATGTGTTTAGTTTACGATTACATGGGTTTGGGAACTTTGAGGGAACATTTGTATAAGACCAACAACAAAACTCGTCTCTCATGGAAGCAAAGGTTGGAGATTTGTATTGGAGCAGCCAGGGGACTTCATTACCTTCACACAGGAGCACAATACACCATCATTCATAGAGATGTTAAAACTACCAACATTCTCTTGGATGAAAACTGGGTTGCAAAGGTTTCTGATTTCGGACTCTCGAAAACTGGTCCGAACATGGCTAATGGTCATGTTAGCACGGTAGTTAAGGGTAGCTTTGGCTACTTAGATCCCGAGTACTTCAGAAGGCAACAACTAACTGAAAAATCTGATGTCTATTCATTTGGGGTTGTCCTTTTTGAAGTATTATGTGCAAGGCCTGCCTTGAATCCAAGCCTGCCAAAGGAACAGGTAAGCCTTGCAGATTGGGCGTTGCATTGCAAACGGAAAGGATTTCTTGAGGATCTCATCGACCCTCATCTCAAAGGGAAAATCACCCCTGACAGCTTGAAGAAGTTTGCAGATGCTGCTGAGAAATGCCTAGACGACCATGGAGCCGAGCGACCGTCTATGGGCGATGTGTTATGGAACCTTGAATTTGCTCTCCAACTTCAGGAAAGTGCCGATGGTGGTTCAAGTCATAGGTCGAGGGTACATGAGGAAGCTAACCAGAGAAGCCAAGAAATGGCTGCACATTACAACAACCTCAGCCTTGGAAGTGAGCAAGACTTAATTGAATCTAATAATGAACAAAACAGTACTGCAATCTTCTCTCAACTTGTCCATCCAACAGGCCGATAA 2571 43.64 MNANTHVMLSLFFVLLGIFNRVYSASVLDPPPDPPLLLRCGSNEEGNDENGRKWISDSKFLDPKNTLAAPVGFQDPSMTSQVPYMEARVFTAVTAYKFPIKRDNRYWLRLHFYPSTYGPHDSVNSYFTVTANDLTLVKNFSAYMTCQAFTQAYIVREFTLAATESESLNLTFTPVSGFAFVNGIELVQMPEIFGEAIMVGAREQTMDVTGSSMQTIARLNVGGSYISPANDSGLSRAWYDDYPYLFGASEGVVLEASKRLVIDYKDMPKYIGPVEIYRTLRSMGTSKDVNANYNLTWLFPNIDPGFMYLVRLHFCDVSLSRPNQVVFDVFINNQTADVNGIDVIAWAGSRGVPKYRDYVVFSNESPTMQQIWLAMHPKMSDAPEFADAMLNGVEIFKLDSGKNLAGKNPQPSAFRMKVEAESERNFEGKGNNAEVIGGAAGGAAAFVVVALCFAVYQRKNRLPGNDSHTTSWLPIYGNSHSSGSKSTVSGKSTASNLAQGLARHFSLSEILHATKSFSESNVIGVGGFGKVYKGVIDGGTKVAIKRSNPSSEQGVHEFLTEIDLLSKLRHKHLVSLIGFCDEENEMCLVYDYMGLGTLREHLYKTNNKTRLSWKQRLEICIGAARGLHYLHTGAQYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMANGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPSLPKEQVSLADWALHCKRKGFLEDLIDPHLKGKITPDSLKKFADAAEKCLDDHGAERPSMGDVLWNLEFALQLQESADGGSSHRSRVHEEANQRSQEMAAHYNNLSLGSEQDLIESNNEQNSTAIFSQLVHPTGR* 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2059910 2063315 - CsaV3_2G003980.1 Csa02g00299 518356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00299 856 SMART serkin_6 517 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00299 856 Gene3D Transferase(Phosphotransferase) domain 1 593 814 - -
Csa02g00299 856 SUPERFAMILY Protein kinase-like (PK-like) 502 786 IPR011009 -
Csa02g00299 856 Pfam Protein tyrosine and serine/threonine kinase 520 783 IPR001245 GO:0004672|GO:0006468
Csa02g00299 856 PANTHER RECEPTOR-LIKE PROTEIN KINASE ANXUR2 27 837 - -
Csa02g00299 856 PANTHER OS07G0166700 PROTEIN 27 837 IPR045272 GO:0004714|GO:0006468
Csa02g00299 856 Pfam Malectin-like domain 40 397 IPR024788 -
Csa02g00299 856 Gene3D - 36 190 - -
Csa02g00299 856 Gene3D - 211 398 - -
Csa02g00299 856 ProSiteProfiles Protein kinase domain profile. 517 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00299 856 ProSitePatterns Protein kinases ATP-binding region signature. 523 545 IPR017441 GO:0005524
Csa02g00299 856 CDD STKc_IRAK 523 789 - -
Csa02g00299 856 Gene3D Phosphorylase Kinase; domain 1 478 592 - -
Csa02g00299 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00299 Csa-Chr2:2059910 Csa04g01700 Csa-Chr4:16396422 0 dispersed
Csa02g00299 Csa-Chr2:2059910 Csa06g01709 Csa-Chr6:15028080 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77873 PF12819 Malectin_like 1.40E-35 CL0202 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00299 - - csv:101219475 1679.46