Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00312 ATGGCGTCAAGGAGGATATCCTCACTCTTATCTCGTTCCATTTCTTCTTCTTCTTCTTCTTCTTCTTCGCTTCTCCTTTCCAAAGGGAGAAGGGGTTTGAATGGAAGAACAATTGCTAAATATAGTACTGCATCTGCTGTTGAAGATCCTATCACTCCATCTGTGAAAGTGAATTATAACCAGTTATTGATTAATGGGCAGTTTGTGGATTCAGTCTCAGGAAAAACGTTTCCTACTTTGGATCCAAGAACTGGGGAAGTCATTGCTGAAGTTGCTGAAGGTGATGCTAGAGATATTGATATTGCAGTTTCTGCTGCACGCAAGGCGTTTGATGAAGGGCCTTGGCCTAAAATGACTGCTTATGAAAGGTCAAAGATAATGTTGAGGTTTGCTGATTTGGTTGAAAAGCATGCTGAAGAAGTTGCAGCACTCGAAACATGGGATAATGGAAAGACATATGAACAATCGTTAAAAATTGAAATCCCGATGTTCGTACGTCTCTTTCGATACTATGGTGGATGGGCGGATAAGATCCACGGACTCACAGTTCCTGCCGATGGCTCGTATCATGTACAAACCTTGCACGAACCTATTGGCGTGGCAGGTCAGATCATTCCATGGAACTTTCCTCTGGTCATGTTTGCTTGGAAAGTCGGTCCGGCATTAGCATGTGGGAATACTATTGTTCTGAAGACAGCTGAGCAAACACCTTTGTCTGCTCTATTGGTGGCTAAGCTATTCCATGAGGCTGGACTTCCTGAGGGCGTTTTGAATATTGTTTCTGGTTATGGACCTACTGCTGGTGCTGCCCTTGCTAGTCATATGGAAGTTGATAAACTTGCTTTTACTGGATCAACCGAAACGGGGAAGGTTGTACTTGAATTAGCATCAAAAAGCAATCTGAAGCCAGTAACGTTGGAGCTTGGTGGAAAATCCCCTTTCATTGTATGTGAGGATGCTGATGTAGACAAGGCTGTGGAAATGGCACACTTTGCTCTGTTCTTCAACCAGGGACAATGTTGCTGTGCTGGTTCTCGTACTTTCGTTCATGAAAAAGTACACGATGAGTTTGTAGAAAAAGCAAGGAACCGAGCTGCGAACCGTGTTGTTGGTGATCCTTTCTTAGGTGGAATCGAGCAAGGTCCTCAGGTTGATGCCGAACAATTCAAGAAAATATTGAAATATATAAAATATGGGATTGAAGGTGGAGCCACTCTTGAAGCAGGAGGAGATAGGTTTGGTTCCAAGGGTTACTATGTCCAACCAACAGTTTTCTCAAACGTCAAGGATGACATGAAAATTGCAGAGGATGAGATTTTTGGTCCAGTACAAACAATCCTAAAATACAAAGACATTGATGAGGTGATAAGGAGGGCAAATGCTAGTCGTTATGGACTGGCTGCTGGTGTGTTTACTCAAAACATCAACACTGCCAACCGGTTGACACGCTCGCTGAGAGTTGGGTCAGTATGGATCAATTGCTTTGATGTATTTGATGCTGCAGTTCCTTTTGGTGGGTACAAGATGAGTGGACATGGGAGAGAAAAGGGAATTTACAGCCTTAGCAATTACCTGCAAGTAAAGGCTGTGGTGACTCCTTTGGAAAACCCTGCTTGGCTTTAG 1623 43.44 MASRRISSLLSRSISSSSSSSSSLLLSKGRRGLNGRTIAKYSTASAVEDPITPSVKVNYNQLLINGQFVDSVSGKTFPTLDPRTGEVIAEVAEGDARDIDIAVSAARKAFDEGPWPKMTAYERSKIMLRFADLVEKHAEEVAALETWDNGKTYEQSLKIEIPMFVRLFRYYGGWADKIHGLTVPADGSYHVQTLHEPIGVAGQIIPWNFPLVMFAWKVGPALACGNTIVLKTAEQTPLSALLVAKLFHEAGLPEGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTETGKVVLELASKSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVHDEFVEKARNRAANRVVGDPFLGGIEQGPQVDAEQFKKILKYIKYGIEGGATLEAGGDRFGSKGYYVQPTVFSNVKDDMKIAEDEIFGPVQTILKYKDIDEVIRRANASRYGLAAGVFTQNINTANRLTRSLRVGSVWINCFDVFDAAVPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLENPAWL* 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2115327 2118691 - CsaV3_2G004110.1 Csa02g00312 518369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00312 540 Pfam Aldehyde dehydrogenase family 68 530 IPR015590 GO:0016491
Csa02g00312 540 CDD ALDH_F2BC 57 532 - -
Csa02g00312 540 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 334 345 IPR016160 GO:0016491
Csa02g00312 540 SUPERFAMILY ALDH-like 57 534 IPR016161 GO:0016491
Csa02g00312 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 64 528 IPR016162 GO:0016491
Csa02g00312 540 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 306 313 IPR029510 GO:0016491
Csa02g00312 540 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 27 540 - -
Csa02g00312 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 310 499 IPR016163 GO:0016620
Csa02g00312 540 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 27 540 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00160 Csa-Chr1:1036221 Csa02g00312 Csa-Chr2:2115327 0 dispersed
Csa01g02053 Csa-Chr1:17531029 Csa02g00312 Csa-Chr2:2115327 0 dispersed
Csa02g00312 Csa-Chr2:2115327 Csa06g01146 Csa-Chr6:9553079 6.66E-103 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00312 K00128 - csv:101202756 1036.94