Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00321 ATGGCATTACTGAGGTATAGAAAAAATGAGATGGTTGAGATTATTGACCATGAAGATCAATGCTCGGTTGTTAATGCCAAAACCCACAAACGACGATGGAGAATGGCCTTTGCAGCCATTTATTTCACCAGACTTCTCATTTCTCTATCCAAAAAAGTCGGCCACCGCAAGTTCTTGCGATCGCTTTCATATGTTACTGTTGATATGCACCTGGATTATCATGATGTTGACAATATGGATTCAGACGAACAACGGTCGTACGTCGATCGAAAAGTTTTGAGTATGATGGTGAGGGAGAAGAATTTTGAGTGTTTGGATCGATTTGGAGGTGTTGAAGGACTTGCTAATCTTCTTGAAACGAACCCCGAGAAGGGAATCGTTGCAACGGAAGATGATCTAATTTCTAGAAAAAATTCTTTTGGAACAAATACTTATTTGAAGCTCCATGGTAGAAGCTTCGTGAGTTTTGTGATCGAAGCGCTTAACGATACTACGATGATTATTCTTTTGATATGTGCAGCGCTTTCCTTAGGATTTGGTATCAAACAACACGGTTGGGACGATGGATGGTACGACGGTGGCAGCATTGTTGTCGCCATATTTCTTGTGGTTGGTGTTTCCACTATTAGCAACTTCAAGCAGTCGAGGCAGTTCGAGAAGCTTTCAAATGAGAGAGAGGACATAAAAATCGAGGTCATTAGAGCCGGTCGACGCAAACCAGTATCGATATTTGACATTGTCGTTGGAGACGTTGTGTATTTGAAGATTGGAGATCAGATTCCTGCCGATGGGGTGTTCCTCGAAGGGCATGCGTTGAAAGTTGACGAGTCTCAGATGACTGGAGAGAGTGATCAAGTTGAAGTAAATCTTGGAAGTAATCCATTCTTGCTATCAGGAACCAAAGTGAGTGATGGTTTTGGTGTGATGATGGTTACTTCAGTGGGAATGAACACAACCTGGGGAGAGATGATGAGTTCAATCAGGCAAGAAGTTAATGAAACCACTCCTTTGCAAGCTCGTTTAAACAAGATGACCGCGGTGATCGGAAAGCTTGGACTGACGGTTGCCCTGCTCGTACTCCTTGTTCTTCTTGTTCGCTATTTCACCAGAAGCACCGGCGAGTTCAATGGAAGCAAGACGAGGTTCAATGATATCATGAATGCAATTCTTGACATGGTTACCGCTGCGGTTACGATCATCGTTGTCGCTATACCGGAAGGTTTGCCTCTAGCTGTTACTTTAACTTTAGCTTACTCAATGAAAAAGATGATGGCAGATAATGCAATGGTTAGGAAACTCTCTGCTTGTGAAACAATGGGATCAGCAACAACAATTTGTACAGATAAAACTGGCACCCTTACTTTGAATGAGATGAAAGTTACTGAGTTTTGGATTGGGGAAGATGAAATTATGGACAAAGATCTTTCCAATTCAAGGATCGTTGAATTGTTGCACCAAGCAGTTGGCTTGAATACAACTGGTAGTGTTCAAAGATCTACTTCTTCATTGCCTCTAGAAATATTCGGGAGTCCAACTGAGAAAGCGATTCTTTCGTGGGCCGTGTTCGACTTGGATTTGAACCTTGATGAATTGAAGAAGCAACATAAAATAATCCAAGTGGAGACTTTCAGTTCAGAGAAAAAGAGAAGCGGGGTTTCGACAAGACGCTATGGGGAGAAGTTTATCCATACACATTGGAAGGGAGCAGCCGAAATGATATTGACAATGTGCTCATATTATTATAACAAACAGGGAACAGTTAGAGCCATTGATGACGAAGCAAGAACACGATTGATTGCGACAATCACAACTATGGCAGGAAAAAGTCTCCGATGCATAGCCTTCGCCCAGAAGCAAAACGAAGACAACGAAAACCCAGAAGTCCCTACTAAACTTGACGAATCGGGATTGACATTACTTGGAATAGTCGGTTTGAAGGATCCTTGTAGGCCAGGAGTTAGAGAAGCTATAGAATCATGTAAAGCGGCAGGAGTGGACATCAAAATGGTGACAGGTGATAACTTACACACAGCAACAGCTATAGCAATGGAATGTGGGATACTAAATCCCAACGATGATACGAACAACGACGAAGTTGTAGTCGAGGGCATAAGATTTAGAAACTACACACCTGAGGAGAGACTAGAAAAGATTGGGAACATCAAAGTAATGGCTAGATCTTCCCCATTTGACAAGCTTCTAATGGTACAATGCTTGAAGAATTTAGGCCATGTGGTGGCAGTTACTGGGGATGGAACAAATGATGCCCCAGCTCTTCATGAAGCAGACATTGGTCTTTCGATGGGAATTCAAGGAACGGAAGTCGCAAAAGAGAGCTCGGACATCGTCATCTTAGACGACAACTTTACGTCAGTCGTCACGGTTTTGAAATGGGGAAGATGTGTTTACAACAACATCCAAAAGTTCATTCAATTTCAACTCACAGTGAATGTTGCAGCATTAGTAGTGAACTTCATTGCTGCTGTTTCATCAGGTAAAGTTTCTTTAACAGCAGTTCAGTTATTATGGGTGAATCTCATAATGGACACCATGGGAGCTTTAGCCTTAGCCACCGAGCAACCCACGAATGATCTCATGGAAAAAAAGCCAGTCGGACGAACCGAACCATTGGTGACGAAAGTCATGTGGAGAAATCTCATTGCACAGGCTGTGTATCAAGTGACAGTCTTATTGGTTTTGGAGTTTAAAGGAGGTGCCATCTTTAATGTGGAGGGAAAGGTCAAGGGCACACTCATTTTCAATACATTTGTGCTATGCCAAATCTTTAATGAGTTCAATGCAAGGAAGATGGAGAAGAAGAATATATTTGAAGGGATACATAAAAGCAAGGTGTTTTTGGGAATAATTGTTATAACTTTGGGTTTTCAAGTGGTAATGGTGGAGCTTTTGGGAAGGTTTGCAAATACAATAAGGTTGAATTTGGGGCAATGGGGAATATGTATTGCCATTGCAGCTTTGTCTTGGCCAATTGGATGGCTTTCTAAGTTAATACCAGTTTCTGCTCTTCACTTTCCAAGGAGAAATTAG 3048 41.96 MALLRYRKNEMVEIIDHEDQCSVVNAKTHKRRWRMAFAAIYFTRLLISLSKKVGHRKFLRSLSYVTVDMHLDYHDVDNMDSDEQRSYVDRKVLSMMVREKNFECLDRFGGVEGLANLLETNPEKGIVATEDDLISRKNSFGTNTYLKLHGRSFVSFVIEALNDTTMIILLICAALSLGFGIKQHGWDDGWYDGGSIVVAIFLVVGVSTISNFKQSRQFEKLSNEREDIKIEVIRAGRRKPVSIFDIVVGDVVYLKIGDQIPADGVFLEGHALKVDESQMTGESDQVEVNLGSNPFLLSGTKVSDGFGVMMVTSVGMNTTWGEMMSSIRQEVNETTPLQARLNKMTAVIGKLGLTVALLVLLVLLVRYFTRSTGEFNGSKTRFNDIMNAILDMVTAAVTIIVVAIPEGLPLAVTLTLAYSMKKMMADNAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTEFWIGEDEIMDKDLSNSRIVELLHQAVGLNTTGSVQRSTSSLPLEIFGSPTEKAILSWAVFDLDLNLDELKKQHKIIQVETFSSEKKRSGVSTRRYGEKFIHTHWKGAAEMILTMCSYYYNKQGTVRAIDDEARTRLIATITTMAGKSLRCIAFAQKQNEDNENPEVPTKLDESGLTLLGIVGLKDPCRPGVREAIESCKAAGVDIKMVTGDNLHTATAIAMECGILNPNDDTNNDEVVVEGIRFRNYTPEERLEKIGNIKVMARSSPFDKLLMVQCLKNLGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFTSVVTVLKWGRCVYNNIQKFIQFQLTVNVAALVVNFIAAVSSGKVSLTAVQLLWVNLIMDTMGALALATEQPTNDLMEKKPVGRTEPLVTKVMWRNLIAQAVYQVTVLLVLEFKGGAIFNVEGKVKGTLIFNTFVLCQIFNEFNARKMEKKNIFEGIHKSKVFLGIIVITLGFQVVMVELLGRFANTIRLNLGQWGICIAIAALSWPIGWLSKLIPVSALHFPRRN* 1016
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2193143 2196788 + CsaV3_2G004200.1 Csa02g00321 518378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00321 1015 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 452 653 IPR023299 GO:0000166
Csa02g00321 1015 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 89 1006 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Csa02g00321 1015 PRINTS H+-transporting ATPase (proton pump) signature 598 616 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g00321 1015 PRINTS H+-transporting ATPase (proton pump) signature 749 765 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g00321 1015 PRINTS H+-transporting ATPase (proton pump) signature 781 806 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g00321 1015 Gene3D - 159 1002 - -
Csa02g00321 1015 Pfam Cation transporter/ATPase, N-terminus 109 176 IPR004014 -
Csa02g00321 1015 CDD P-type_ATPase_Ca_PMCA-like 136 882 - -
Csa02g00321 1015 Pfam Cation transporting ATPase, C-terminus 836 1004 IPR006068 -
Csa02g00321 1015 Pfam E1-E2 ATPase 228 424 - -
Csa02g00321 1015 SUPERFAMILY HAD-like 444 853 IPR036412 -
Csa02g00321 1015 PANTHER CATION TRANSPORTING ATPASE 25 998 - -
Csa02g00321 1015 Gene3D - 456 648 IPR023299 GO:0000166
Csa02g00321 1015 SUPERFAMILY Calcium ATPase, transmembrane domain M 109 1007 IPR023298 -
Csa02g00321 1015 Gene3D - 131 328 - -
Csa02g00321 1015 SFLD C1.7: P-type atpase like 428 802 - -
Csa02g00321 1015 PANTHER CALCIUM-TRANSPORTING ATPASE 25 998 - -
Csa02g00321 1015 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 388 497 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g00321 1015 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 720 830 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g00321 1015 Pfam haloacid dehalogenase-like hydrolase 443 763 - -
Csa02g00321 1015 ProSitePatterns E1-E2 ATPases phosphorylation site. 448 454 IPR018303 -
Csa02g00321 1015 PRINTS P-type cation-transporting ATPase superfamily signature 275 289 - -
Csa02g00321 1015 PRINTS P-type cation-transporting ATPase superfamily signature 446 460 - -
Csa02g00321 1015 PRINTS P-type cation-transporting ATPase superfamily signature 641 652 - -
Csa02g00321 1015 PRINTS P-type cation-transporting ATPase superfamily signature 663 673 - -
Csa02g00321 1015 PRINTS P-type cation-transporting ATPase superfamily signature 749 768 - -
Csa02g00321 1015 PRINTS P-type cation-transporting ATPase superfamily signature 773 785 - -
Csa02g00321 1015 SFLD p-type atpase 428 802 IPR044492 -
Csa02g00321 1015 Gene3D - 443 794 IPR023214 -
Csa02g00321 1015 SUPERFAMILY Calcium ATPase, transduction domain A 229 326 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00321 Csa-Chr2:2193143 Csa05g01391 Csa-Chr5:14841551 0 dispersed
Csa02g00680 Csa-Chr2:5401128 Csa02g00321 Csa-Chr2:2193143 0 transposed
Csa07g00261 Csa-Chr7:2035486 Csa02g00321 Csa-Chr2:2193143 1.05E-95 transposed
Csa07g02289 Csa-Chr7:21300958 Csa02g00321 Csa-Chr2:2193143 0 transposed
Csa02g00321 Csa-Chr2:2193143 Csa07g01678 Csa-Chr7:17247587 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00321 K01537 - csv:101218531 1964.12