Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00334 ATGGATGGTGTCGTCTCAGATCTTGAGCTTGATTGCTCTGAATTTGTTGAAGTTGATCCCACTGGCAGATATGGCAGATACAATGAAATTTTGGGAAAAGGGGCTTCAAAAACAGTTTACAGAGCATTTGATGAATATGAAGGAATTGAGGTGGCTTGGAATCAAGTGAAACTTTATGATTTCTTGCAAAGTCCTGAAGATCTGGAAAGACTTTACTGTGAGATTCATCTTTTGAAGACATTGAAGCATAGAAATATTATGAAATTCTATACTTCTTGGGTTGATATTGCCAATAGAAACATCAATTTCGTTACTGAAATGTTCACTTCCGGCACTCTTAGACAGTATAGGCTGAAACATAAGAGAGTTAATATTAGAGCAGTGAAGCATTGGTGCAGGCAGATTTTGAGAGGGCTTCATTATTTGCATAGCCATGAGCCTCCTGTAATCCATAGAGATCTCAAGTGTGACAATATCTTTGTTAACGGGAATCAAGGGGAAGTTAAGATTGGTGATCTTGGACTTGCAGCAATCCTCAGGAAATCTCATGCTGATCATTGTGTGGGGACCCCTGAGTTTATGGCTCCAGAAGTGTATGCAGAGGCGTACAACGAATTAGTCGATATATACTCATTTGGAATGTGCATTCTGGAGATGATAACTTTCGAATATCCATACAGCGAATGCACACATCCCGCTCAAATCTATAAGAAAGTCATATCTGGGAAAAAACCAGATGCCTTGTACAAAGTGAAGGATCCTGAAGTGCGGCAGTTCATCGATAAGTGTTTGGCTACAGTTTCATATCGGCTCTCGGCAGCAGAGCTTTTGAATGACCCTTTTCTTCGAACTGACAATGGCGAATATGATCTAAGACCTGTCGATTATGGAAGAGGATTGGACGATGTTTGCCCTCTTATAAGACAGCCTTATCTAGAACTTCATAGAAGTGACAGCTCCTTTTGTACTGGATATCCATATGATTACAGCTTTGAAGCTTCAAGTGAATCTGGTTATCATCCAATTGATAATGGAATTGAACTTTTTGAGTATTGTGAAGGTGAACATTCTGAGGATGTTGATATTAGCATTAAAGGGAAGATGAGTGAAGATGGTGGCATCTTCTTAAGACTTAGAATTGCAGATAAAGAAGGGCGTATCAGGAACATTTATTTTCCATTTGATGTCGAGACAGATACAGCATTGAGTGTTGCGACAGAAATGGTTGCGGAGCTAGATATGACAGATCAAGACGTGACAAGAATTGCTGATATGATCGATGGAGAAATTGCTTCCTTGGTGCCTGAATGGAGGCCAGGTCCGGGAATTGAGGAAACGCCCCGCTTTGCAAACCAAAGCTATTGTCATAATTGTGCTCCTTCTACTTACAACAGTGCTTCAAATGGTCTTATGTTGAGAAATCATGATGGAAAGAACTCAGAGGTAGCTCAATGTTGTGGACATCGATATGCTTCTATGCATGGTCGTTTTGAGGAGATAATGTATCATGCTGACGAGCCAGAGCATCATACAGCAGAGGATGCACCAAATGTGTCGAGCCATCCTGATGGGCTGAGTTATCCTGAAATATGGGGACATCATGAAAGCCGTGAACTTAGTTCAATGAGCTCACGACAAAGCCATTCAGATGAAGATTACGAGAAAACAGACCGACCAATTACAGACACAGACACAAAAGAAATTATCATGGAAAGTAAAACTGCTCCTAATACGAGACGTACGCTTAGGAGCCTGATGAATTCTCTTTCTTTCTCAGAAACCCCTTCTCCTCCCGATATTAATGAGATTGATGTCCAACAAGAAATGAGATGGATTAAGGCCAAGTACCAATTAGAATTAAGCAAGCTCAGAGATCAACAGTTAAATCTTTCTTCAAAATCTTCAAGTTCTGAAGACAGACAACAAAAAATGGAAAATGCAACTCCTAGAGGCAACCACAACCAAATCCTTGACAGTTCTGGTCGAGACATGAACCGAAGTAGTACTGATAGCCATGTTTATATCAATAATAGCTGTTACAGTACAGACATGCCCAAGCAAAGGTCTCGAAATCGCAAGGCTGTGGAGTCCTCTATTGTGGATAAAGTTGTCACTGCTAAAAATGCCTGCAATGGTTCGTTGCTTCCAAGCTCCCTCCATAGAACAATCTCTCTCCCAGTTGATGCTGTTCATATATAG 2199 40.7 MDGVVSDLELDCSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDIANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLHYLHSHEPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHADHCVGTPEFMAPEVYAEAYNELVDIYSFGMCILEMITFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFIDKCLATVSYRLSAAELLNDPFLRTDNGEYDLRPVDYGRGLDDVCPLIRQPYLELHRSDSSFCTGYPYDYSFEASSESGYHPIDNGIELFEYCEGEHSEDVDISIKGKMSEDGGIFLRLRIADKEGRIRNIYFPFDVETDTALSVATEMVAELDMTDQDVTRIADMIDGEIASLVPEWRPGPGIEETPRFANQSYCHNCAPSTYNSASNGLMLRNHDGKNSEVAQCCGHRYASMHGRFEEIMYHADEPEHHTAEDAPNVSSHPDGLSYPEIWGHHESRELSSMSSRQSHSDEDYEKTDRPITDTDTKEIIMESKTAPNTRRTLRSLMNSLSFSETPSPPDINEIDVQQEMRWIKAKYQLELSKLRDQQLNLSSKSSSSEDRQQKMENATPRGNHNQILDSSGRDMNRSSTDSHVYINNSCYSTDMPKQRSRNRKAVESSIVDKVVTAKNACNGSLLPSSLHRTISLPVDAVHI* 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2295834 2300273 + CsaV3_2G004330.1 Csa02g00334 518391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00334 732 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00334 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Csa02g00334 732 MobiDBLite consensus disorder prediction 627 692 - -
Csa02g00334 732 SUPERFAMILY Protein kinase-like (PK-like) 28 283 IPR011009 -
Csa02g00334 732 MobiDBLite consensus disorder prediction 537 569 - -
Csa02g00334 732 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 721 - -
Csa02g00334 732 MobiDBLite consensus disorder prediction 537 580 - -
Csa02g00334 732 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 375 428 IPR024678 GO:0004674|GO:0005524
Csa02g00334 732 MobiDBLite consensus disorder prediction 647 685 - -
Csa02g00334 732 ProSiteProfiles Protein kinase domain profile. 25 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00334 732 CDD STKc_WNK 23 282 - -
Csa02g00334 732 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 721 - -
Csa02g00334 732 Gene3D Phosphorylase Kinase; domain 1 11 106 - -
Csa02g00334 732 SMART serkin_6 25 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00334 732 Gene3D Transferase(Phosphotransferase) domain 1 108 289 - -
Csa02g00334 732 Gene3D - 372 438 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g03451 Csa02g00334 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03451 Csa-Chr1:31514550 Csa02g00334 Csa-Chr2:2295834 0 dispersed
Csa02g00334 Csa-Chr2:2295834 Csa07g01167 Csa-Chr7:11442874 0 dispersed
Csa02g00334 Csa-Chr2:2295834 Csa03g00442 Csa-Chr3:3747292 5.66E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77875 PF00069 Pkinase 9.00E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00334 K08867 - csv:101219552 1470.68