Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00346 ATGGGATGTATAATAAGCCGAGAGGTTGCTTCCAGGAACTTAGCAGATTCTGAGGAGAAGAAGGAGAAGAGTTCTGAATGTGGTGAAGATTTGGAAAGAAAAGAAGCCGATGTGGCTGTTGTTGAGGTTGCTCAGGAGGAAGGGCATGGCCATGGGGGTCAGCCCTTGACAAAAGAGCAGAGAAGAAAGTTGAAATCTAACCCCAGGTTGAGTAATTTGCCAAAGCAATCTCAGGCGGAGCAGGTGGCTGCTGGATGGCCTTCCTGGCTCACAGCAGTCTGTGGGGAGGCACTCAATGGTTGGATTCCGAGGAAGGCTGATACATTTGAGAAGATTGATAAGATTGGACAAGGAACATACAGTAATGTGTACAAAGCAAAAGATATACTAACTGGTAAAGTTGTTGCATTGAAGAAGGTTCGTTTTGATAATGTAGAGCCAGAAAGTGTAAGGTTTATGGCCAGAGAGATTCTCATTTTGCGACGCCTAGATCATCCTAATGTTGTAAAATTAGAGGGTTTGGTTACATCAAGGATGTCATGTAGTTTGTACCTTGTGTTTGAGTACATGGAGCATGATTTAGCTGGACTTGCTGCAAATCCATCCATCAAATTTACAGAGGCTCAGGTTAAGTGTTTCATGCAACAACTTCTATCAGGACTCGAGCATTGTCATAGCCACAGGGTGCTTCATCGCGATATTAAGGGTTCAAATCTTCTTATTGATGGTGAAGGGTTGCTTAAGATTGCTGACTTTGGACTAGCTACGTTCTTTGATCCAAAACAGAAGCACCCATTGACTAATCGTGTTGTAACCTTATGGTATCGATCCCCCGAGCTTCTACTCGGTGCGACTCACTATGGTGTAGGCATTGACCTTTGGAGTGCAGGTTGTATTTTAGCAGAATTATTATCTGGAAGGGCCATAATGCCTGGCCGTACAGAGGTTGAGCAACTACATAAGATATTCAAGCTGTGTGGCTCAGCTTCAGATGAATATTTAAAGAGAGCAAAGTTGCCAAATGCAGCCTTATTTAGACCCCGAGAACCATATAAGAGATGTATAAAAGAGACATTTAAGGATTTCCCACCATCGTCATTTCCCCTTATAGAAACACTTCTTGCAATTGATCCAGCTGAGAGAATGACAGCTACAGATGCATTAAAGAGCGAGTTTTTCACTACAGAACCTTATGCTTGTGAACCTTCTAGCCTCCCCAAATATCCACCTAGTAAGGAGATGGATGCCAAACGACGAGATGATGAAGCACGAAGACAAAGAGCAGCAAGCAAATTGCAGAATGATCGTGTGAAGAAGACACGCGCCCGTAACCGTGCTGGTAGGGCCATACCTATTCAAGGAGCCAACGCAGAACTTCAAGCAAATATTGATAGACGGCGTCTAATTACTCATGCAAATGCAAAGAGCAAGAGCGAAAAGTTCCCCCCTCCACATCAGGATGGGGCACTCGGATTCACATTAGGATATTCACGTCATATTGATCCAGCTGTTGTTCCTTCTGATGTTCCTTTTAGCTCCACATCGTTTGGCTATCCAAACGAACTAGACCAAGCCTGGTCGGGTCCATTGGTTCAATCTTCTGACATCGGTGCTCAAAGGCAGAAACATTTGGGAGGTGATGCAAGAGAACAGCAATCTTCAGTTAAAGGAAAAAAGGCAGCATGA 1686 44.07 MGCIISREVASRNLADSEEKKEKSSECGEDLERKEADVAVVEVAQEEGHGHGGQPLTKEQRRKLKSNPRLSNLPKQSQAEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKVVALKKVRFDNVEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTEAQVKCFMQQLLSGLEHCHSHRVLHRDIKGSNLLIDGEGLLKIADFGLATFFDPKQKHPLTNRVVTLWYRSPELLLGATHYGVGIDLWSAGCILAELLSGRAIMPGRTEVEQLHKIFKLCGSASDEYLKRAKLPNAALFRPREPYKRCIKETFKDFPPSSFPLIETLLAIDPAERMTATDALKSEFFTTEPYACEPSSLPKYPPSKEMDAKRRDDEARRQRAASKLQNDRVKKTRARNRAGRAIPIQGANAELQANIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAVVPSDVPFSSTSFGYPNELDQAWSGPLVQSSDIGAQRQKHLGGDAREQQSSVKGKKAA* 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2385123 2391376 + CsaV3_2G004450.1 Csa02g00346 518403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00346 561 Gene3D Transferase(Phosphotransferase) domain 1 192 433 - -
Csa02g00346 561 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00346 561 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00346 561 MobiDBLite consensus disorder prediction 411 440 - -
Csa02g00346 561 SUPERFAMILY Protein kinase-like (PK-like) 103 398 IPR011009 -
Csa02g00346 561 MobiDBLite consensus disorder prediction 542 561 - -
Csa02g00346 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Csa02g00346 561 MobiDBLite consensus disorder prediction 52 66 - -
Csa02g00346 561 MobiDBLite consensus disorder prediction 1 78 - -
Csa02g00346 561 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Csa02g00346 561 PANTHER OS01G0367700 PROTEIN 54 541 - -
Csa02g00346 561 MobiDBLite consensus disorder prediction 400 443 - -
Csa02g00346 561 MobiDBLite consensus disorder prediction 529 561 - -
Csa02g00346 561 CDD STKc_CDK9_like 109 393 - -
Csa02g00346 561 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Csa02g00346 561 MobiDBLite consensus disorder prediction 12 44 - -
Csa02g00346 561 SMART serkin_6 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00346 561 PANTHER CELL DIVISION PROTEIN KINASE 54 541 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02837 Csa02g00346 CCT
Csa01g02837 Csa02g00346 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00346 Csa-Chr2:2385123 Csa06g01089 Csa-Chr6:8991456 0 dispersed
Csa01g00986 Csa-Chr1:6137843 Csa02g00346 Csa-Chr2:2385123 0 transposed
Csa03g01412 Csa-Chr3:10610724 Csa02g00346 Csa-Chr2:2385123 0 transposed
Csa03g01943 Csa-Chr3:15340938 Csa02g00346 Csa-Chr2:2385123 0 transposed
Csa05g00932 Csa-Chr5:7416608 Csa02g00346 Csa-Chr2:2385123 0 transposed
Csa05g03200 Csa-Chr5:31644976 Csa02g00346 Csa-Chr2:2385123 6.10E-173 transposed
Csa06g02830 Csa-Chr6:24674968 Csa02g00346 Csa-Chr2:2385123 4.17E-145 transposed
Csa01g02837 Csa-Chr1:24909570 Csa02g00346 Csa-Chr2:2385123 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77876 PF00069 Pkinase 9.70E-68 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00346 K08819 - csv:101217497 1098.96