Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00348 ATGGGTGCTCAGAGAAAGGGAGCATCGCGGGTTTCCGACGACCATGAGGAGCTGGCACGAGTTTCATTGCAGGCTGTTCTTCTTGCCGATAGCTTTACCACTAAGTTTCGCCCCATAACGCTTGAACGCCCCAAGGTATTATTGCCGCTGGTAAATGTCCCGATGATTAATTATACCTTATCCTGGCTTGAATCGGCTGGTGTTGAAGAGGTGTTTGTATTTTGCTGTGCTAACTCGAAGCAAGTAATTGATTATTTGGAGAACTCTGATTGGGTATCCCTACCAGACTTTGCAGTAAGAACTATAGAGTCGCACAACTCCATTAGTGCTGGAGATGCCCTTCGTCTTATCTACGAAAGAAATGTGATACATGGTGATTTTGTACTTATCACTGGAGACACCATAAGCAACATGTCACTTACGCAAGCTCTTCAAGAACATAAAGAGAGAAAGAAGAAAGATAGTAATGCCGTAATGACGATGGTTGTCAAACGGTCAAAGCCTTCTCCTATCACACACCAATCTCGGCTGGGCACTGATGAACTATTTATGGCAATTGATCACAATACTAAGCAGCTCGTGTACTATGAGGACAGGGTTGACTATTCAAAAGGAATTATACATCTGGACAAGTCATTGATAATGGATAATTCTTCCATATCACTTCATAACGACATGCAGGACTGTTATATAGATATCTGCTCCCCAGAAGTACTCAGCCTGTTTACTGACAATTTTGACTACCAACATCTGCGTCGTCATTTTGTCAAGGGCTTGCTCTTAGATGATATCATGGGTTACAAGATTTACACACACGAAATTTGCTCAAGCTATGCAGCAAGAATTGATAACTATCGAAGCTATGACACCGTAAGTAAGGACATAATACAAAGGTGGACATATCCACTGGTACCCGATGTTAAATTCTTTGGGAACTCTACTTATAAACTTGAAAGGCAGGGAATGTATCGAGCATCAGAAATACTGCAGGCACGCTCTGCCCAGGTTGGTCCGTTTACTGTTATTGGAGATAACAGCAAAATTGGTGACAACACCAAAATTACCAATTCGATTATTGGGCATGGTTGTAGTATTGGATCAAATGTTAAAATTGAAGGCTCTTATATATGGGACAATGTGACCATTGAAGATGGTTGTAAAATCAGTAATGCTATTGTGTGTGATGGAGTTGTTATAAAGTCAGGAGCAGAACTGGAACCTGGTGTAATTTTGTCTTTCAAGGTTGTTGTAGGGGATCAGTTTACTGTTCCATCATATTCAAAGGTATCTTTGTTTGAGCAGCCAACCAATCAAGATAGCGATGAGGAGCTGGAATACGCAGATAATAGCAGTGTTGCAGATACAACAGACAAGTCAAATAGTGCACTGATGTCCAACCCACTGGAAATGCAAGGCTGGCCTGCATCTGAGCTAGGGAAGGGAGGTCTAGGTTATGTTTGGTCAATTTGTGAAGGAAGTGTCGAAGAAGAATGGAGGCATTCAGTTGCACCCATTCCCGCCGATAAACTCGAGAAGGTTCTGCATAAAGCACCAGATGACGAGGTGGAGTTAACTCAAGATGCTAACGTTTTACCACCTTCAGGGGAGTTGAAGTCCGACTCATATGTCTCAGACGGTGATGATAACGAAAGCTCTAGAGATGACTCCATCCACTTCGAGAAAGAGGTTGAAGCAACATTTCTGAGGGCTGTGCATGAAAATATTGAAGTAGCCAATGTAATTTTGGAAGTAAACTCATTGCGGTTGTCATTTAATAAGGTGGCTTCAGATTGCGCAGGAGCAATATTTTATTCTCTGATGAACTTTGCCTTAGATTCTTCACGTGGTTCATCAAGTGAACTGCTGAAAAATACTACAAGTATAATTACAAAATGGAAAAAACTTTTGAAGTACTACCTAACTGACTTGGATGAAGAGATTGAAGTGATATTAAAATTTGAAGAGATATGCCTGGAATCTGCCAAGGAATTCACTCCACATTTTACTAAGATTTTGTGGCAACTATATGACCAAGAAATCATTCAAGAAGAGGCCATTCTGAAGTGGGATGCCGAGAAAAAAGAAGCGGATGATTCAGATAAGCTTTTTGTCAAGCAGGCTGAGAAATTTATTGAATGGTTAAAAGTTGCATCAGAGGAAGAGGAAGAGGAAGAAGAAGAATAG 2184 41.07 MGAQRKGASRVSDDHEELARVSLQAVLLADSFTTKFRPITLERPKVLLPLVNVPMINYTLSWLESAGVEEVFVFCCANSKQVIDYLENSDWVSLPDFAVRTIESHNSISAGDALRLIYERNVIHGDFVLITGDTISNMSLTQALQEHKERKKKDSNAVMTMVVKRSKPSPITHQSRLGTDELFMAIDHNTKQLVYYEDRVDYSKGIIHLDKSLIMDNSSISLHNDMQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIYTHEICSSYAARIDNYRSYDTVSKDIIQRWTYPLVPDVKFFGNSTYKLERQGMYRASEILQARSAQVGPFTVIGDNSKIGDNTKITNSIIGHGCSIGSNVKIEGSYIWDNVTIEDGCKISNAIVCDGVVIKSGAELEPGVILSFKVVVGDQFTVPSYSKVSLFEQPTNQDSDEELEYADNSSVADTTDKSNSALMSNPLEMQGWPASELGKGGLGYVWSICEGSVEEEWRHSVAPIPADKLEKVLHKAPDDEVELTQDANVLPPSGELKSDSYVSDGDDNESSRDDSIHFEKEVEATFLRAVHENIEVANVILEVNSLRLSFNKVASDCAGAIFYSLMNFALDSSRGSSSELLKNTTSIITKWKKLLKYYLTDLDEEIEVILKFEEICLESAKEFTPHFTKILWQLYDQEIIQEEAILKWDAEKKEADDSDKLFVKQAEKFIEWLKVASEEEEEEEEE* 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2402987 2418822 - CsaV3_2G004470.1 Csa02g00348 518405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00348 727 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Csa02g00348 727 MobiDBLite consensus disorder prediction 524 556 - -
Csa02g00348 727 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 10 725 - -
Csa02g00348 727 MobiDBLite consensus disorder prediction 436 466 - -
Csa02g00348 727 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 9 303 IPR029044 -
Csa02g00348 727 ProSiteProfiles W2 domain profile. 553 724 IPR003307 GO:0005515
Csa02g00348 727 Gene3D Hexapeptide repeat proteins 319 435 - -
Csa02g00348 727 Pfam Nucleotidyl transferase 25 168 IPR005835 GO:0009058|GO:0016779
Csa02g00348 727 SMART 542_3 633 720 IPR003307 GO:0005515
Csa02g00348 727 Pfam eIF4-gamma/eIF5/eIF2-epsilon 645 724 IPR003307 GO:0005515
Csa02g00348 727 CDD W2_eIF2B_epsilon 554 718 IPR044123 GO:0005085|GO:0031369
Csa02g00348 727 SUPERFAMILY Trimeric LpxA-like enzymes 267 429 IPR011004 -
Csa02g00348 727 CDD LbH_eIF2B_epsilon 341 419 - -
Csa02g00348 727 Gene3D - 546 725 - -
Csa02g00348 727 MobiDBLite consensus disorder prediction 449 466 - -
Csa02g00348 727 SUPERFAMILY Nucleotide-diphospho-sugar transferases 22 369 IPR029044 -
Csa02g00348 727 SUPERFAMILY ARM repeat 559 715 IPR016024 -
Csa02g00348 727 MobiDBLite consensus disorder prediction 541 556 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03077 Csa-Chr1:26793064 Csa02g00348 Csa-Chr2:2402987 7.52E-25 dispersed
Csa02g00348 Csa-Chr2:2402987 Csa06g00137 Csa-Chr6:901523 2.14E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00348 K03240 - csv:101217025 1400.19