Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g00348 | ATGGGTGCTCAGAGAAAGGGAGCATCGCGGGTTTCCGACGACCATGAGGAGCTGGCACGAGTTTCATTGCAGGCTGTTCTTCTTGCCGATAGCTTTACCACTAAGTTTCGCCCCATAACGCTTGAACGCCCCAAGGTATTATTGCCGCTGGTAAATGTCCCGATGATTAATTATACCTTATCCTGGCTTGAATCGGCTGGTGTTGAAGAGGTGTTTGTATTTTGCTGTGCTAACTCGAAGCAAGTAATTGATTATTTGGAGAACTCTGATTGGGTATCCCTACCAGACTTTGCAGTAAGAACTATAGAGTCGCACAACTCCATTAGTGCTGGAGATGCCCTTCGTCTTATCTACGAAAGAAATGTGATACATGGTGATTTTGTACTTATCACTGGAGACACCATAAGCAACATGTCACTTACGCAAGCTCTTCAAGAACATAAAGAGAGAAAGAAGAAAGATAGTAATGCCGTAATGACGATGGTTGTCAAACGGTCAAAGCCTTCTCCTATCACACACCAATCTCGGCTGGGCACTGATGAACTATTTATGGCAATTGATCACAATACTAAGCAGCTCGTGTACTATGAGGACAGGGTTGACTATTCAAAAGGAATTATACATCTGGACAAGTCATTGATAATGGATAATTCTTCCATATCACTTCATAACGACATGCAGGACTGTTATATAGATATCTGCTCCCCAGAAGTACTCAGCCTGTTTACTGACAATTTTGACTACCAACATCTGCGTCGTCATTTTGTCAAGGGCTTGCTCTTAGATGATATCATGGGTTACAAGATTTACACACACGAAATTTGCTCAAGCTATGCAGCAAGAATTGATAACTATCGAAGCTATGACACCGTAAGTAAGGACATAATACAAAGGTGGACATATCCACTGGTACCCGATGTTAAATTCTTTGGGAACTCTACTTATAAACTTGAAAGGCAGGGAATGTATCGAGCATCAGAAATACTGCAGGCACGCTCTGCCCAGGTTGGTCCGTTTACTGTTATTGGAGATAACAGCAAAATTGGTGACAACACCAAAATTACCAATTCGATTATTGGGCATGGTTGTAGTATTGGATCAAATGTTAAAATTGAAGGCTCTTATATATGGGACAATGTGACCATTGAAGATGGTTGTAAAATCAGTAATGCTATTGTGTGTGATGGAGTTGTTATAAAGTCAGGAGCAGAACTGGAACCTGGTGTAATTTTGTCTTTCAAGGTTGTTGTAGGGGATCAGTTTACTGTTCCATCATATTCAAAGGTATCTTTGTTTGAGCAGCCAACCAATCAAGATAGCGATGAGGAGCTGGAATACGCAGATAATAGCAGTGTTGCAGATACAACAGACAAGTCAAATAGTGCACTGATGTCCAACCCACTGGAAATGCAAGGCTGGCCTGCATCTGAGCTAGGGAAGGGAGGTCTAGGTTATGTTTGGTCAATTTGTGAAGGAAGTGTCGAAGAAGAATGGAGGCATTCAGTTGCACCCATTCCCGCCGATAAACTCGAGAAGGTTCTGCATAAAGCACCAGATGACGAGGTGGAGTTAACTCAAGATGCTAACGTTTTACCACCTTCAGGGGAGTTGAAGTCCGACTCATATGTCTCAGACGGTGATGATAACGAAAGCTCTAGAGATGACTCCATCCACTTCGAGAAAGAGGTTGAAGCAACATTTCTGAGGGCTGTGCATGAAAATATTGAAGTAGCCAATGTAATTTTGGAAGTAAACTCATTGCGGTTGTCATTTAATAAGGTGGCTTCAGATTGCGCAGGAGCAATATTTTATTCTCTGATGAACTTTGCCTTAGATTCTTCACGTGGTTCATCAAGTGAACTGCTGAAAAATACTACAAGTATAATTACAAAATGGAAAAAACTTTTGAAGTACTACCTAACTGACTTGGATGAAGAGATTGAAGTGATATTAAAATTTGAAGAGATATGCCTGGAATCTGCCAAGGAATTCACTCCACATTTTACTAAGATTTTGTGGCAACTATATGACCAAGAAATCATTCAAGAAGAGGCCATTCTGAAGTGGGATGCCGAGAAAAAAGAAGCGGATGATTCAGATAAGCTTTTTGTCAAGCAGGCTGAGAAATTTATTGAATGGTTAAAAGTTGCATCAGAGGAAGAGGAAGAGGAAGAAGAAGAATAG | 2184 | 41.07 | MGAQRKGASRVSDDHEELARVSLQAVLLADSFTTKFRPITLERPKVLLPLVNVPMINYTLSWLESAGVEEVFVFCCANSKQVIDYLENSDWVSLPDFAVRTIESHNSISAGDALRLIYERNVIHGDFVLITGDTISNMSLTQALQEHKERKKKDSNAVMTMVVKRSKPSPITHQSRLGTDELFMAIDHNTKQLVYYEDRVDYSKGIIHLDKSLIMDNSSISLHNDMQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIYTHEICSSYAARIDNYRSYDTVSKDIIQRWTYPLVPDVKFFGNSTYKLERQGMYRASEILQARSAQVGPFTVIGDNSKIGDNTKITNSIIGHGCSIGSNVKIEGSYIWDNVTIEDGCKISNAIVCDGVVIKSGAELEPGVILSFKVVVGDQFTVPSYSKVSLFEQPTNQDSDEELEYADNSSVADTTDKSNSALMSNPLEMQGWPASELGKGGLGYVWSICEGSVEEEWRHSVAPIPADKLEKVLHKAPDDEVELTQDANVLPPSGELKSDSYVSDGDDNESSRDDSIHFEKEVEATFLRAVHENIEVANVILEVNSLRLSFNKVASDCAGAIFYSLMNFALDSSRGSSSELLKNTTSIITKWKKLLKYYLTDLDEEIEVILKFEEICLESAKEFTPHFTKILWQLYDQEIIQEEAILKWDAEKKEADDSDKLFVKQAEKFIEWLKVASEEEEEEEEE* | 728 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2402987 | 2418822 | - | CsaV3_2G004470.1 | Csa02g00348 | 518405 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g00348 | 727 | CDD | eIF-2B_epsilon_N | 23 | 239 | IPR035543 | - | |
Csa02g00348 | 727 | MobiDBLite | consensus disorder prediction | 524 | 556 | - | - | |
Csa02g00348 | 727 | PANTHER | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON | 10 | 725 | - | - | |
Csa02g00348 | 727 | MobiDBLite | consensus disorder prediction | 436 | 466 | - | - | |
Csa02g00348 | 727 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 9 | 303 | IPR029044 | - | |
Csa02g00348 | 727 | ProSiteProfiles | W2 domain profile. | 553 | 724 | IPR003307 | GO:0005515 | |
Csa02g00348 | 727 | Gene3D | Hexapeptide repeat proteins | 319 | 435 | - | - | |
Csa02g00348 | 727 | Pfam | Nucleotidyl transferase | 25 | 168 | IPR005835 | GO:0009058|GO:0016779 | |
Csa02g00348 | 727 | SMART | 542_3 | 633 | 720 | IPR003307 | GO:0005515 | |
Csa02g00348 | 727 | Pfam | eIF4-gamma/eIF5/eIF2-epsilon | 645 | 724 | IPR003307 | GO:0005515 | |
Csa02g00348 | 727 | CDD | W2_eIF2B_epsilon | 554 | 718 | IPR044123 | GO:0005085|GO:0031369 | |
Csa02g00348 | 727 | SUPERFAMILY | Trimeric LpxA-like enzymes | 267 | 429 | IPR011004 | - | |
Csa02g00348 | 727 | CDD | LbH_eIF2B_epsilon | 341 | 419 | - | - | |
Csa02g00348 | 727 | Gene3D | - | 546 | 725 | - | - | |
Csa02g00348 | 727 | MobiDBLite | consensus disorder prediction | 449 | 466 | - | - | |
Csa02g00348 | 727 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 22 | 369 | IPR029044 | - | |
Csa02g00348 | 727 | SUPERFAMILY | ARM repeat | 559 | 715 | IPR016024 | - | |
Csa02g00348 | 727 | MobiDBLite | consensus disorder prediction | 541 | 556 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g03077 | Csa-Chr1:26793064 | Csa02g00348 | Csa-Chr2:2402987 | 7.52E-25 | dispersed | |
Csa02g00348 | Csa-Chr2:2402987 | Csa06g00137 | Csa-Chr6:901523 | 2.14E-08 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g00348 | K03240 | - | csv:101217025 | 1400.19 |