Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00358 ATGATGAAGCTGCAAACATATGCGGGGATTAGTTTTATTGCAACCATAATGGTTATCTATCATGCCTTCAACAGTAGAGGGCAGTTCTACCCAGCATTGGTCTATTTATCGACCTCCAAGATAAATCTAGTACTTCTTCTCAATATGGGTTTAGTCATCATGTGCATTTTGTGGCAGCTAACAAAAAAGATATTTCTGGGTTCTCTTAGAGAAGCAGAAGTTGAGAGGCTCAACGAGCAATCATGGAAGGAGTTGATGGAAATCCTCTTTGCCATCACTATTTTTCGGCAAGATTTTTCTGTTGCATTCCTGGGTATGGTTACGGCTCTGTTGTTGATCAAAGCTCTCCATTGGCTGGCTCAGAAGAGAGTTGAATACATGGAAACCACTCCATCGGTGCCATTGTTGTCTCATATCCGGATTGTTTCTTTCTTAGGCTTCCTCTTTGTTCTCGATAGTCTGTTTTTTTATAATTCGATAGATTCTCTGATACAGACAAGAAAGGCCTCGGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCGACAACAGCTGTGTCAACATTTGTGAAATATATCTTCTATGTCAGTGATGTGCTCATGGAGGGACAATGGGAAAGGAAACCAGTCTATACATTTTACTTGGAACTTATTCGAGACTTGCTTCACTTGTCGATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACTTATGGTGTGCCTTTGCACTTGATCCGAGAGCTTTATGAGATCTTTAGGAATTTCAGGATTCGCATTGCAGATTACATCCGTTATAGAAAGATTACTTCAAACATGAACGATCGTTTTCCAGATGCAACGCCTGAAGAACTCAATTCAAGTGATGCAACATGCATTATTTGTCGTGAAGAGATGACAGTTGCAAAGAAACTAGTATGTGGACACCTTTTTCATGTCCATTGTCTCCGATCTTGGTTGGAGCGACAACATACTTGTCCCACTTGTAGAGCCCTTGTTGTACCACCCGAAGGTTCAAGTACAACAACCGGTCATCATGGAGTGCAGTCTGATGCTAACCAACAAGGAACAGGAACCACAAGTTCATCTGCACAAGGTACAAGTGGCACGGGCGTTACTAATGATAATTTAAGTCATCATCAAGCTAGAGTCCGAGCTGCTGCCGCCGCTGCTTCAATATATGAGAAATCGTATGTTTATCCTTGTGCGAGCACATTAGTATGGTCTCTTGGATATGCAGTAGTTCCTCAAGTTGAAAGACCTTTGTTTGACTCTAACAATACAGAAACAAACGGAGAGCAATCTCCCAATGGACATCCACAATACTTTTCATTTCCTGGCGGCCCTTCAAACCTGTCCTTCACTCAATTTCCCCAAAATATCTTTGTTCCTTTTCAGCCACGAGAGGGCACTGGAAACAATATAGAGGAATTGGGCAGTAGTTTAAATGTATCAGGCTCACAGCTTGAAGCTCAAGAAAAATTTCTTCAACAACAGATTGAGTTCCTTCAGAATCAACTGCAACTTCTCCGTAAACCAAAAGTTGAGGAAAGCTCAAGAGGAGCTAGCGAGGCAGATAAAAAAGGGAAAAGTTTAGCTATCTCACCATCATCGTCGGCGTCATTGTCTTCATCAGATTCTCATCCACCTGGAGAAACCGAAAGGGCGGTAAGATAG 1677 41.56 MMKLQTYAGISFIATIMVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLGMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIDSLIQTRKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSTTTGHHGVQSDANQQGTGTTSSSAQGTSGTGVTNDNLSHHQARVRAAAAAASIYEKSYVYPCASTLVWSLGYAVVPQVERPLFDSNNTETNGEQSPNGHPQYFSFPGGPSNLSFTQFPQNIFVPFQPREGTGNNIEELGSSLNVSGSQLEAQEKFLQQQIEFLQNQLQLLRKPKVEESSRGASEADKKGKSLAISPSSSASLSSSDSHPPGETERAVR* 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2486459 2494486 + CsaV3_2G004570.1 Csa02g00358 518415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00358 558 MobiDBLite consensus disorder prediction 340 375 - -
Csa02g00358 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 336 IPR013083 -
Csa02g00358 558 SMART ring_2 292 329 IPR001841 -
Csa02g00358 558 MobiDBLite consensus disorder prediction 424 449 - -
Csa02g00358 558 SUPERFAMILY RING/U-box 272 336 - -
Csa02g00358 558 MobiDBLite consensus disorder prediction 532 550 - -
Csa02g00358 558 PANTHER - 1 459 - -
Csa02g00358 558 Pfam Ring finger domain 291 330 IPR001841 -
Csa02g00358 558 MobiDBLite consensus disorder prediction 513 527 - -
Csa02g00358 558 Coils Coil 486 506 - -
Csa02g00358 558 PANTHER RING ZINC FINGER PROTEIN 1 459 - -
Csa02g00358 558 CDD RING-H2_synoviolin 289 330 - -
Csa02g00358 558 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Csa02g00358 558 MobiDBLite consensus disorder prediction 512 558 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00358 Csa-Chr2:2486459 Csa06g02296 Csa-Chr6:20621623 7.60E-22 dispersed
Csa02g00358 Csa-Chr2:2486459 Csa02g02176 Csa-Chr2:19593571 1.40E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00358 K10601 - csv:101215351 1055.05