Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00399 ATGGCATTAGAGGCTGTGGTTTTTTCTCAAGATCCATTATGTTACAATGGAAGCAAAGATCTTTACTCTTTACTTGGAGGAGGAATTTGGGCTAATGGAGGCTTTGAATATCCAGAGATCCCTCATGATTTTCCCGAGAACCAAACAGAAAATTTCCCATTTGAAGATTGGAACTCATCTTCCTCTGTTTTTGTTCCTAACCCTTCCCCTGAAGCTGCTGATTCCAGAAATGGGTTGCTGAAGCCGCCATTAGAGGCTGAATCAATTACTCCGCACCCAATTCGTCCAAGGAAACGAAGACCTAAATCACGCAAGAACAAAGAGGAAATCGAAAATCAAAGAATGACTCACATCGCTGTTGAACGAAATCGAAGAAAACAGATGAATGAATATCTTTCTGTTCTTCGTTCCTTAATGCCAGAGTCTTATGTTCAAAGGGGGGATCAAGCTTCAATTATTGGGGGAGCGATTAATTTTGTGAAGGAGTTGGAACAACAAGTTCAAGTTCTATCCACAGTAGAAACAAAAGGGAAGATTAATAATTCAGCTGAAGGGTGTTGTAATTCAAATTCAAATTCAAATTCAAAAATCCCTTTCACAGAGTTCTTCAGTTTCCCTCAATTCAAAGCAATGGAAGGTTGTTCTTTAGTGAGTGAAAATGAAACTCAATGTTCTTCCACAGTTGCTGATATTGAAGTAACAATGGTAGAAAATCATGCAAATTTGAAAATAAGATCAAAGAGAAGACCAAAACAAATCTTGAAAATTGTTGCTGGCTTGCATTCTCTTTCCCTTTCTGTTCTTCATCTCAATATTTCAACTATCAACCAAATTGTTCTTTATTGTCTCAGTGTCAAGGTCGAAGATGATTGCAAGCTGAGTTCTGTTGATGAAATTGCTTCCGCCCTGCATCAGTTGCTTAGTAGAATAGAAGAAGATTCACTTATGAACTGA 954 37.95 MALEAVVFSQDPLCYNGSKDLYSLLGGGIWANGGFEYPEIPHDFPENQTENFPFEDWNSSSSVFVPNPSPEAADSRNGLLKPPLEAESITPHPIRPRKRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTVETKGKINNSAEGCCNSNSNSNSKIPFTEFFSFPQFKAMEGCSLVSENETQCSSTVADIEVTMVENHANLKIRSKRRPKQILKIVAGLHSLSLSVLHLNISTINQIVLYCLSVKVEDDCKLSSVDEIASALHQLLSRIEEDSLMN* 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2751170 2752663 - CsaV3_2G005070.1 Csa02g00399 518456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00399 317 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 317 - -
Csa02g00399 317 SMART finulus 118 169 IPR011598 GO:0046983
Csa02g00399 317 MobiDBLite consensus disorder prediction 67 109 - -
Csa02g00399 317 Pfam Helix-loop-helix DNA-binding domain 113 164 IPR011598 GO:0046983
Csa02g00399 317 Gene3D - 95 177 IPR036638 GO:0046983
Csa02g00399 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 163 IPR011598 GO:0046983
Csa02g00399 317 PANTHER MAX DIMERIZATION, MAD 1 317 - -
Csa02g00399 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 173 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02800 Csa-Chr1:24662874 Csa02g00399 Csa-Chr2:2751170 9.56E-73 dispersed
Csa02g00399 Csa-Chr2:2751170 Csa02g02175 Csa-Chr2:19575197 6.10E-83 dispersed
Csa02g00399 Csa-Chr2:2751170 Csa03g00171 Csa-Chr3:1295970 1.06E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30869 PF00010 HLH 7.80E-10 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00399 - - csv:101212782 579.326