Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g00399 | ATGGCATTAGAGGCTGTGGTTTTTTCTCAAGATCCATTATGTTACAATGGAAGCAAAGATCTTTACTCTTTACTTGGAGGAGGAATTTGGGCTAATGGAGGCTTTGAATATCCAGAGATCCCTCATGATTTTCCCGAGAACCAAACAGAAAATTTCCCATTTGAAGATTGGAACTCATCTTCCTCTGTTTTTGTTCCTAACCCTTCCCCTGAAGCTGCTGATTCCAGAAATGGGTTGCTGAAGCCGCCATTAGAGGCTGAATCAATTACTCCGCACCCAATTCGTCCAAGGAAACGAAGACCTAAATCACGCAAGAACAAAGAGGAAATCGAAAATCAAAGAATGACTCACATCGCTGTTGAACGAAATCGAAGAAAACAGATGAATGAATATCTTTCTGTTCTTCGTTCCTTAATGCCAGAGTCTTATGTTCAAAGGGGGGATCAAGCTTCAATTATTGGGGGAGCGATTAATTTTGTGAAGGAGTTGGAACAACAAGTTCAAGTTCTATCCACAGTAGAAACAAAAGGGAAGATTAATAATTCAGCTGAAGGGTGTTGTAATTCAAATTCAAATTCAAATTCAAAAATCCCTTTCACAGAGTTCTTCAGTTTCCCTCAATTCAAAGCAATGGAAGGTTGTTCTTTAGTGAGTGAAAATGAAACTCAATGTTCTTCCACAGTTGCTGATATTGAAGTAACAATGGTAGAAAATCATGCAAATTTGAAAATAAGATCAAAGAGAAGACCAAAACAAATCTTGAAAATTGTTGCTGGCTTGCATTCTCTTTCCCTTTCTGTTCTTCATCTCAATATTTCAACTATCAACCAAATTGTTCTTTATTGTCTCAGTGTCAAGGTCGAAGATGATTGCAAGCTGAGTTCTGTTGATGAAATTGCTTCCGCCCTGCATCAGTTGCTTAGTAGAATAGAAGAAGATTCACTTATGAACTGA | 954 | 37.95 | MALEAVVFSQDPLCYNGSKDLYSLLGGGIWANGGFEYPEIPHDFPENQTENFPFEDWNSSSSVFVPNPSPEAADSRNGLLKPPLEAESITPHPIRPRKRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTVETKGKINNSAEGCCNSNSNSNSKIPFTEFFSFPQFKAMEGCSLVSENETQCSSTVADIEVTMVENHANLKIRSKRRPKQILKIVAGLHSLSLSVLHLNISTINQIVLYCLSVKVEDDCKLSSVDEIASALHQLLSRIEEDSLMN* | 318 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2751170 | 2752663 | - | CsaV3_2G005070.1 | Csa02g00399 | 518456 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g00399 | 317 | PANTHER | HELIX-LOOP-HELIX-LIKE PROTEIN | 1 | 317 | - | - | |
Csa02g00399 | 317 | SMART | finulus | 118 | 169 | IPR011598 | GO:0046983 | |
Csa02g00399 | 317 | MobiDBLite | consensus disorder prediction | 67 | 109 | - | - | |
Csa02g00399 | 317 | Pfam | Helix-loop-helix DNA-binding domain | 113 | 164 | IPR011598 | GO:0046983 | |
Csa02g00399 | 317 | Gene3D | - | 95 | 177 | IPR036638 | GO:0046983 | |
Csa02g00399 | 317 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 112 | 163 | IPR011598 | GO:0046983 | |
Csa02g00399 | 317 | PANTHER | MAX DIMERIZATION, MAD | 1 | 317 | - | - | |
Csa02g00399 | 317 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 112 | 173 | IPR036638 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02800 | Csa-Chr1:24662874 | Csa02g00399 | Csa-Chr2:2751170 | 9.56E-73 | dispersed | |
Csa02g00399 | Csa-Chr2:2751170 | Csa02g02175 | Csa-Chr2:19575197 | 6.10E-83 | dispersed | |
Csa02g00399 | Csa-Chr2:2751170 | Csa03g00171 | Csa-Chr3:1295970 | 1.06E-12 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30869 | PF00010 | HLH | 7.80E-10 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g00399 | - | - | csv:101212782 | 579.326 |