Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00416 ATGCAAGATATCTTCGCTTCTGTTCGCCGATCATTGGTCTTTCGTCCTCCTCTCGACAACGATGATTCCCATTCCCCTGCAATTGGTGTTGGAGCCCTAGTTGATAAGATCAACTCCAGCATCCGCAAATCCAGAGTCTTCTCTAGACACTCCCCTTCCTCTTCCTCTCTCCCTCCCATTCCTAAAGACACCGACCCTCCCATTCGATGGCGCAAAGGCGAATTGATTGGCTGTGGCGCTTTTGGTCGCGTTTATATGGGCATGAATCTTGGCTCTGGAGAGCTTCTTGCTGTCAAACAGGTTTTGATTGCTGCAAATGGTGCTTCGAAGGAGAAAGCGCAGGCTCATGTTCAGGAGCTTGAGGAAGAAGTGAAACTTCTGAAGGATCTTTCTCATCCAAATATTGTTAGATACTTGGGCACAGTCAGAGAGGATGACTCTTTAAATATATTATTGGAATTTGTCCCTGGTGGATCGATAGCATCACTTCTGGGGAAATTTGGAGCCTTCCCTGAAGCAGTTTTAAGAACATATACAAAACAGTTATTATTGGGATTGGAGTATTTACACAAGAACGGTATCATGCACAGGGACATTAAGGGGGCAAATATCCTTGTAGATAACAAGGGATGCATTAAGCTTGCTGATTTTGGGGCTTCGAAACAGGTTGTCGAGCTGGCTACAATTTCAGGAGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACTGGTCATAGTTTCTCTGCTGACATATGGAGTGTTGGATGCACCTTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTTCATATAGGGACGACAAAGTCTCATCCACCAATCCCTGAGCAGCTTTCGGTTGAAGCTAAAGATTTTCTGTTGAAATGTTTGCAGAAGGAACCAAACTTAAGACCAACTGCCTCTGAACTCTTGAAGCATCCTTTTGTTATAGGGGAGGAGACACAATCTCAACTTATGTCACGTGATGCATGCACGATTTTCCATCATCAGGAGCCCCTGGAAACCCATTCACCACAATGTACTTCAGAACTTGAAATGAGTAAAACTCCTACACATCCTGGATCAAGCGATATTTGTAATTTGGATAGTTTGAGATGCTCAAAGGTATACTCTACAAACAAACTAGAAAGTGATATGTGGGGAAGAAACAGTGATGATGAAATGTGTCAGATTGATGACAAGGATGATTTTATGTTAGATGAAGTAAAAATTGGCTCTTCTATTATACATGAGAATATGAAGAGTTATAATCCAATTTGTGAGCCCTCTGATGATGAGGATTGCAAATTTGATAGAAGTCCAGTAGTAGACCGAGGAAGCAGTTTACATGAAGAAGCTCTTGCACCTGGAAGCTGTTCTGGAGCTTTTGACGAAGAACAAAACTTCTCATTTCCTAGTGGGCGATCACTTTCTGAAGATGAGGATGAGCTTACTGAATCAAAAATTAAAGCTTTCTTGGATGAAAAGGCTCTTGAATTGAAGAAACTGCAGTCACCGCTTTATGAGGAGTTCTACAATAGTTTGAATGCATCCTGCTCTCCAGTTTTTATGGAGAGCAAACAAGATGAAAGCACTCCTAAATACTTGAAATTGCCCCCAAAAAGCCGGTCACCAAGTCGAAGTCCTGGTAACCCATCCCCAGCGCTTGATGCTTTTGGCACTGGTAGCCCAGGGAGCGGTAGCAGGGGTAATGCAAATGATCAAAGGTCACAACTCAACGATTGGAAAGGACTTCATGGTCAGTCAGAAGCTGGTAGCCCAAGCAGTAAGAATTATTCTGAAATACAGAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTCGAGAGAAAACGAGAGATGATGCGTCAAGCTGGCGTGGGAGCCAAAACTTCATCTCCAAAGGATAAAGCCATGGGCAGGCCAAGAGAGCGAACACGGTTTGCATCTCCATTCCGTGATGATGTGTCGGGTGCTGGGAGGGACAACAGGGAAAACTTCATCTCCTGA 2055 43.89 MQDIFASVRRSLVFRPPLDNDDSHSPAIGVGALVDKINSSIRKSRVFSRHSPSSSSLPPIPKDTDPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGASKEKAQAHVQELEEEVKLLKDLSHPNIVRYLGTVREDDSLNILLEFVPGGSIASLLGKFGAFPEAVLRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTFIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRPTASELLKHPFVIGEETQSQLMSRDACTIFHHQEPLETHSPQCTSELEMSKTPTHPGSSDICNLDSLRCSKVYSTNKLESDMWGRNSDDEMCQIDDKDDFMLDEVKIGSSIIHENMKSYNPICEPSDDEDCKFDRSPVVDRGSSLHEEALAPGSCSGAFDEEQNFSFPSGRSLSEDEDELTESKIKAFLDEKALELKKLQSPLYEEFYNSLNASCSPVFMESKQDESTPKYLKLPPKSRSPSRSPGNPSPALDAFGTGSPGSGSRGNANDQRSQLNDWKGLHGQSEAGSPSSKNYSEIQRKWKEELDQELERKREMMRQAGVGAKTSSPKDKAMGRPRERTRFASPFRDDVSGAGRDNRENFIS* 685
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 2864440 2871052 + CsaV3_2G005240.1 Csa02g00416 518473
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00416 684 MobiDBLite consensus disorder prediction 45 64 - -
Csa02g00416 684 MobiDBLite consensus disorder prediction 651 684 - -
Csa02g00416 684 MobiDBLite consensus disorder prediction 580 616 - -
Csa02g00416 684 MobiDBLite consensus disorder prediction 617 639 - -
Csa02g00416 684 Pfam Protein kinase domain 71 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00416 684 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00416 684 Coils Coil 103 130 - -
Csa02g00416 684 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00416 684 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 1 594 - -
Csa02g00416 684 SUPERFAMILY Protein kinase-like (PK-like) 69 380 IPR011009 -
Csa02g00416 684 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Csa02g00416 684 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 594 - -
Csa02g00416 684 MobiDBLite consensus disorder prediction 540 684 - -
Csa02g00416 684 CDD STKc_MAPKKK 69 332 - -
Csa02g00416 684 Gene3D Transferase(Phosphotransferase) domain 1 69 369 - -
Csa02g00416 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Csa02g00416 684 Coils Coil 619 639 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00416 Csa-Chr2:2864440 Csa06g02446 Csa-Chr6:21834105 0 dispersed
Csa02g00416 Csa-Chr2:2864440 Csa06g02922 Csa-Chr6:25325579 1.14E-73 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77878 PF00069 Pkinase 2.40E-72 CL0016 Csa PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00416 K20606 - csv:101209358 1318.52