Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g00416 | ATGCAAGATATCTTCGCTTCTGTTCGCCGATCATTGGTCTTTCGTCCTCCTCTCGACAACGATGATTCCCATTCCCCTGCAATTGGTGTTGGAGCCCTAGTTGATAAGATCAACTCCAGCATCCGCAAATCCAGAGTCTTCTCTAGACACTCCCCTTCCTCTTCCTCTCTCCCTCCCATTCCTAAAGACACCGACCCTCCCATTCGATGGCGCAAAGGCGAATTGATTGGCTGTGGCGCTTTTGGTCGCGTTTATATGGGCATGAATCTTGGCTCTGGAGAGCTTCTTGCTGTCAAACAGGTTTTGATTGCTGCAAATGGTGCTTCGAAGGAGAAAGCGCAGGCTCATGTTCAGGAGCTTGAGGAAGAAGTGAAACTTCTGAAGGATCTTTCTCATCCAAATATTGTTAGATACTTGGGCACAGTCAGAGAGGATGACTCTTTAAATATATTATTGGAATTTGTCCCTGGTGGATCGATAGCATCACTTCTGGGGAAATTTGGAGCCTTCCCTGAAGCAGTTTTAAGAACATATACAAAACAGTTATTATTGGGATTGGAGTATTTACACAAGAACGGTATCATGCACAGGGACATTAAGGGGGCAAATATCCTTGTAGATAACAAGGGATGCATTAAGCTTGCTGATTTTGGGGCTTCGAAACAGGTTGTCGAGCTGGCTACAATTTCAGGAGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACTGGTCATAGTTTCTCTGCTGACATATGGAGTGTTGGATGCACCTTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTTCATATAGGGACGACAAAGTCTCATCCACCAATCCCTGAGCAGCTTTCGGTTGAAGCTAAAGATTTTCTGTTGAAATGTTTGCAGAAGGAACCAAACTTAAGACCAACTGCCTCTGAACTCTTGAAGCATCCTTTTGTTATAGGGGAGGAGACACAATCTCAACTTATGTCACGTGATGCATGCACGATTTTCCATCATCAGGAGCCCCTGGAAACCCATTCACCACAATGTACTTCAGAACTTGAAATGAGTAAAACTCCTACACATCCTGGATCAAGCGATATTTGTAATTTGGATAGTTTGAGATGCTCAAAGGTATACTCTACAAACAAACTAGAAAGTGATATGTGGGGAAGAAACAGTGATGATGAAATGTGTCAGATTGATGACAAGGATGATTTTATGTTAGATGAAGTAAAAATTGGCTCTTCTATTATACATGAGAATATGAAGAGTTATAATCCAATTTGTGAGCCCTCTGATGATGAGGATTGCAAATTTGATAGAAGTCCAGTAGTAGACCGAGGAAGCAGTTTACATGAAGAAGCTCTTGCACCTGGAAGCTGTTCTGGAGCTTTTGACGAAGAACAAAACTTCTCATTTCCTAGTGGGCGATCACTTTCTGAAGATGAGGATGAGCTTACTGAATCAAAAATTAAAGCTTTCTTGGATGAAAAGGCTCTTGAATTGAAGAAACTGCAGTCACCGCTTTATGAGGAGTTCTACAATAGTTTGAATGCATCCTGCTCTCCAGTTTTTATGGAGAGCAAACAAGATGAAAGCACTCCTAAATACTTGAAATTGCCCCCAAAAAGCCGGTCACCAAGTCGAAGTCCTGGTAACCCATCCCCAGCGCTTGATGCTTTTGGCACTGGTAGCCCAGGGAGCGGTAGCAGGGGTAATGCAAATGATCAAAGGTCACAACTCAACGATTGGAAAGGACTTCATGGTCAGTCAGAAGCTGGTAGCCCAAGCAGTAAGAATTATTCTGAAATACAGAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTCGAGAGAAAACGAGAGATGATGCGTCAAGCTGGCGTGGGAGCCAAAACTTCATCTCCAAAGGATAAAGCCATGGGCAGGCCAAGAGAGCGAACACGGTTTGCATCTCCATTCCGTGATGATGTGTCGGGTGCTGGGAGGGACAACAGGGAAAACTTCATCTCCTGA | 2055 | 43.89 | MQDIFASVRRSLVFRPPLDNDDSHSPAIGVGALVDKINSSIRKSRVFSRHSPSSSSLPPIPKDTDPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGASKEKAQAHVQELEEEVKLLKDLSHPNIVRYLGTVREDDSLNILLEFVPGGSIASLLGKFGAFPEAVLRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTFIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRPTASELLKHPFVIGEETQSQLMSRDACTIFHHQEPLETHSPQCTSELEMSKTPTHPGSSDICNLDSLRCSKVYSTNKLESDMWGRNSDDEMCQIDDKDDFMLDEVKIGSSIIHENMKSYNPICEPSDDEDCKFDRSPVVDRGSSLHEEALAPGSCSGAFDEEQNFSFPSGRSLSEDEDELTESKIKAFLDEKALELKKLQSPLYEEFYNSLNASCSPVFMESKQDESTPKYLKLPPKSRSPSRSPGNPSPALDAFGTGSPGSGSRGNANDQRSQLNDWKGLHGQSEAGSPSSKNYSEIQRKWKEELDQELERKREMMRQAGVGAKTSSPKDKAMGRPRERTRFASPFRDDVSGAGRDNRENFIS* | 685 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2864440 | 2871052 | + | CsaV3_2G005240.1 | Csa02g00416 | 518473 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g00416 | 684 | MobiDBLite | consensus disorder prediction | 45 | 64 | - | - | |
Csa02g00416 | 684 | MobiDBLite | consensus disorder prediction | 651 | 684 | - | - | |
Csa02g00416 | 684 | MobiDBLite | consensus disorder prediction | 580 | 616 | - | - | |
Csa02g00416 | 684 | MobiDBLite | consensus disorder prediction | 617 | 639 | - | - | |
Csa02g00416 | 684 | Pfam | Protein kinase domain | 71 | 332 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa02g00416 | 684 | ProSiteProfiles | Protein kinase domain profile. | 70 | 332 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa02g00416 | 684 | Coils | Coil | 103 | 130 | - | - | |
Csa02g00416 | 684 | SMART | serkin_6 | 70 | 332 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa02g00416 | 684 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 | 1 | 594 | - | - | |
Csa02g00416 | 684 | SUPERFAMILY | Protein kinase-like (PK-like) | 69 | 380 | IPR011009 | - | |
Csa02g00416 | 684 | ProSitePatterns | Protein kinases ATP-binding region signature. | 76 | 99 | IPR017441 | GO:0005524 | |
Csa02g00416 | 684 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 1 | 594 | - | - | |
Csa02g00416 | 684 | MobiDBLite | consensus disorder prediction | 540 | 684 | - | - | |
Csa02g00416 | 684 | CDD | STKc_MAPKKK | 69 | 332 | - | - | |
Csa02g00416 | 684 | Gene3D | Transferase(Phosphotransferase) domain 1 | 69 | 369 | - | - | |
Csa02g00416 | 684 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 194 | 206 | IPR008271 | GO:0004672|GO:0006468 | |
Csa02g00416 | 684 | Coils | Coil | 619 | 639 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g00416 | Csa-Chr2:2864440 | Csa06g02446 | Csa-Chr6:21834105 | 0 | dispersed | |
Csa02g00416 | Csa-Chr2:2864440 | Csa06g02922 | Csa-Chr6:25325579 | 1.14E-73 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77878 | PF00069 | Pkinase | 2.40E-72 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g00416 | K20606 | - | csv:101209358 | 1318.52 |