Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00472 ATGTCGACGAAGAGATTGATTTCCAGTGGAACGACTCCGTCGGAAGCTGAGCCGCCGAGGTTGTTTGCTTCAGCCTCGCACTCGTTCCGGCAATGTGTGGAATCGGCTAGGGTTTTTGAGGAGCTTCCGATTGTTTCCATTGTATCGGTTTCACGGCCGGATACTGGAGATATTAGTCCCTTGCTGTTATCTTACACCATTGAAATCCAATACAAACAGTTTAAATGGAGGTTAGTGAAGAAAGCATCGCAAGTTCTATATTTACATTTTTCATTGAAGAGACGTGCATTTATTGAAGAGCTCCACGAGAAACAAGAGCAGGTGAAAGAATGGCTTCACAACTTGGGAATAGTTGACCATCCAGCTGTAGTTCATCATGATGACGAGTCTGATGATGGGGCTTTTTCTTTGCATGATGAACAAACTACAAGAAACAGGAACGTTCCTTCTGTTGCTGCTTTACCCATCATTAAGCCAGCTCTGGGAGGACAGCGGTCCATTTCAGACAAGGCAAAGCTAGCAATGCAGGGTTACTTAAATCACTTTTTTGGGAACTTAGATATTGTAAATTCTCGTGAGGTCTGCAAATTTTTAGAAGTCTCGAAGATGTCATTTGTAAGAGAACATGGTCCAAAGTTGAAAGAAGGTTACCTAATGGTGAAGCATTTAAAACAAGTCACAGGATCTGATTCTAGTATAAAATGTTTTGCATGTCATTGGTGCAGTTGCTGCATGTACAATTGGAAAAAGGTTTGGGCTGTTTTGAAACCAGGTTTCTTGGCCTTGGTTGCTGATCCTATGGACTCTAAACTTCTAGATATAATTGTTTTTGATGTGCTACCGATGTTAGAAGAAAAGGAGGGATCCCAAGCATGCTTATCATATCATGTCAAGGAGCGCAATCCTTTACGTTATTCATTCAAGGTTAGACGCGGAGATGGGGACATAAGGTTCAGGACCACAAGTACCGCCAAAGTCAGAGAATGGGTCTCATCAATTAATGATGCTGGTTTTGGAGCCAAAGATGGCTGGTGCCAGCCTCATCGCTTTGGTTCTTTTGCTCCTCAGAGAGGTTTGAGTGATGATGAAAGCCAAGCTCAGTGGTTCATAGATGGCCGGGCAGCTTTTGAAGCAATTGCTTGCTCTATTGAGGCTGCTAAATCGGAGATATTCATCACTGGCTGGTGGCTTTGCCCTGAGCTTTATACGCGACGTCCTTTTCACAATCATTCTTCATCACGGCTTGACGCATTGCTGGAAACAAAAGCAAAAGAAGGTGTCCAGATTTACATCTTAATGTATAAGGAGGTTCCTATTGCTCTGAAAATTAACAGTATGTATAGCAAGAAGAGGCTTTTAAATATTCATGAGAATATTAAGGTATTACGTTCTCCTGATCATATGTCAACTGGGATTTATTATTGGTCACATCATGAAAAAATTGTCGTTGTTGATCATCACATTTGCTTCATTGGAGGTTTGGATTTATGCTTCGGCCGCTATGATACAATGGAGCATAAAGTGAGTGATTTCCCTCCCTATACATGGCCGGGAAAGGACTATTACAACCCAAGAGAATCTGAACCAAATTCTTGGGAAGATACAATGAAAGATGAATTGGAACGGGAGAAGTGTCCCCGAATGCCATGGCATGATGTTCACTGTGCCCTTTGGGGATCTCCGTGCCGTGATATTGCACGACACTTTGTTCAGAGGTGGAACCATGCCAAGAGAAACAAAGCCCCAAATGAAGAAAAAATACCTCTACTTATGCCTCAACATGACATGGTCCTTCCACATTACATGGGAAAACGGACAGAGTTGAGCTTTAAAAATACAGACTCAGAGCAAGATCATCAGAAGCAGACCACAGATGATCACTTTTCCTCCTTATCCCCACAGGATGATATTCCATTACTGATGCCTCAGGAAACTGGTGGACTTCCAGATTCTAACGAGCAAACAAATAATCTTTCGAACCACAATTCTTTTAATCAGCCCATGGAAATAGGAAGAAGTGGTACGGGTTCTTTCCAAGCATACAATGCTGAACCATGGACTCAATTTGAACAAACAAATGGATTGTTAGATGAATTTGGATTTTTGGATGAGTTTGGTGCTTTTGGACATCTGAGGGAAGCTACTTTTGATACTCCACCATATATGAAAAATTCAAATGATTGGTTAGAAACTGAACGCAAAAGTAACCATGTTGCTATAAACGAGGTCAACGAAATTGGTCCCCTTACTAGTAGCAATTGTCAGGTAATAAGAAGTGTCAGCCAGTGGTCAGCAGGAACAAGCAAACCAGAAGCAAGTATTCATGCTGCTTATTGCTCTGCCATTCAAGAGGCAAAACATTTCATCTACATTGAGAACCAGTTTTTCATATCTGGTTTATCAGGGGATGAGACCATACAAAATCGGGTTTTGGATGCATTATACCAACGTATATGGCTGGCTCATAAGGAAAAACAATGTTTCCGAGTTATTGTTGTTTTACCACTCTTACCTGGATTTCAGGGTGGTGTAGATGATAATGGTGCAGCAACTGTTCGAGCCTTGATGCATTGGCAGTACCGAACAATTAGTTGGGAAAAAACTTCGATACTGTACCGTCTCAATTTATTATTGGGTCCTAAAACGCAAGATTATATTTTATTTTGTGGCCTTCGATCATATGGCAGACTATTTGATGGTGGTCCAATTGCTACAAGTCAGGTATATGTGCACAGCAAATTGATGATAATTGATGATTGTATTACCTTTATTGGTTCCTCCAATATCAATGATAGAAGTTTACTTGGATCCAGAGATTCTGAGATCGGAGTAATTATCGAGGATAAAGAGTTTGTTGATTCATCTATGAATGGAAAACCTTGGAAAGCTGGAAAGTTCGCTCATAGTCTACGATGTTCCTTGTGGTGTGAGCACCTCGGTCTTCATCTCAGAGAGGTCTGTCAGATCCTTGATCCTATTGTAGAAGCAACGTACAAACATTTATGGTTAGCTACGGCAAAGGAAAACACAACAATATATGAAGAAGTCTTTTCTTGTATCCCCAATGACAACATAAACTCAAGATCGTCTTTACGCCAAAGTTTGGCCGATTTGAAGGTGAAACTTGATCATAACACACTAGATTTAGGAATAGCTGCTGAGAAGATAGAAAGCCATGAAAATGGGGAAGTAAAAATGATAGATCCAATGGAGAGATTGAAGTGTATTAGGGGACATCTAGTTTGTTTTCCTTTGAAGTTCCTGTGGCAAGAAGATCTCAGGCCAGGGTTCATTGAGAGTGAGTTTTATGCTGCCCCTCATGTTTTCCATTGA 3333 41.04 MSTKRLISSGTTPSEAEPPRLFASASHSFRQCVESARVFEELPIVSIVSVSRPDTGDISPLLLSYTIEIQYKQFKWRLVKKASQVLYLHFSLKRRAFIEELHEKQEQVKEWLHNLGIVDHPAVVHHDDESDDGAFSLHDEQTTRNRNVPSVAALPIIKPALGGQRSISDKAKLAMQGYLNHFFGNLDIVNSREVCKFLEVSKMSFVREHGPKLKEGYLMVKHLKQVTGSDSSIKCFACHWCSCCMYNWKKVWAVLKPGFLALVADPMDSKLLDIIVFDVLPMLEEKEGSQACLSYHVKERNPLRYSFKVRRGDGDIRFRTTSTAKVREWVSSINDAGFGAKDGWCQPHRFGSFAPQRGLSDDESQAQWFIDGRAAFEAIACSIEAAKSEIFITGWWLCPELYTRRPFHNHSSSRLDALLETKAKEGVQIYILMYKEVPIALKINSMYSKKRLLNIHENIKVLRSPDHMSTGIYYWSHHEKIVVVDHHICFIGGLDLCFGRYDTMEHKVSDFPPYTWPGKDYYNPRESEPNSWEDTMKDELEREKCPRMPWHDVHCALWGSPCRDIARHFVQRWNHAKRNKAPNEEKIPLLMPQHDMVLPHYMGKRTELSFKNTDSEQDHQKQTTDDHFSSLSPQDDIPLLMPQETGGLPDSNEQTNNLSNHNSFNQPMEIGRSGTGSFQAYNAEPWTQFEQTNGLLDEFGFLDEFGAFGHLREATFDTPPYMKNSNDWLETERKSNHVAINEVNEIGPLTSSNCQVIRSVSQWSAGTSKPEASIHAAYCSAIQEAKHFIYIENQFFISGLSGDETIQNRVLDALYQRIWLAHKEKQCFRVIVVLPLLPGFQGGVDDNGAATVRALMHWQYRTISWEKTSILYRLNLLLGPKTQDYILFCGLRSYGRLFDGGPIATSQVYVHSKLMIIDDCITFIGSSNINDRSLLGSRDSEIGVIIEDKEFVDSSMNGKPWKAGKFAHSLRCSLWCEHLGLHLREVCQILDPIVEATYKHLWLATAKENTTIYEEVFSCIPNDNINSRSSLRQSLADLKVKLDHNTLDLGIAAEKIESHENGEVKMIDPMERLKCIRGHLVCFPLKFLWQEDLRPGFIESEFYAAPHVFH* 1111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3341776 3351658 + CsaV3_2G006790.1 Csa02g00472 518529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00472 1110 SUPERFAMILY PH domain-like 209 344 - -
Csa02g00472 1110 SUPERFAMILY Phospholipase D/nuclease 343 593 - -
Csa02g00472 1110 CDD PLDc_vPLD1_2_yPLD_like_2 766 950 - -
Csa02g00472 1110 Pfam PLD-like domain 779 953 IPR025202 -
Csa02g00472 1110 MobiDBLite consensus disorder prediction 647 677 - -
Csa02g00472 1110 Gene3D Endonuclease Chain A 358 621 - -
Csa02g00472 1110 CDD PLDc_vPLD1_2_yPLD_like_1 366 510 - -
Csa02g00472 1110 SMART pld_4 473 500 IPR001736 GO:0003824
Csa02g00472 1110 SMART pld_4 906 933 IPR001736 GO:0003824
Csa02g00472 1110 Pfam Phospholipase D Active site motif 475 500 IPR001736 GO:0003824
Csa02g00472 1110 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 906 933 IPR001736 GO:0003824
Csa02g00472 1110 ProSiteProfiles PH domain profile. 211 338 IPR001849 -
Csa02g00472 1110 CDD PH_PLD 189 336 - -
Csa02g00472 1110 Gene3D - 201 338 IPR011993 -
Csa02g00472 1110 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 473 500 IPR001736 GO:0003824
Csa02g00472 1110 PANTHER PHOSPHOLIPASE D ZETA 2 27 1107 - -
Csa02g00472 1110 SMART PH_update 212 340 IPR001849 -
Csa02g00472 1110 SUPERFAMILY Phospholipase D/nuclease 747 954 - -
Csa02g00472 1110 PIRSF PLD_euk 48 630 IPR016555 GO:0004630|GO:0006654|GO:0048017
Csa02g00472 1110 PIRSF PLD_euk 714 1110 IPR016555 GO:0004630|GO:0006654|GO:0048017
Csa02g00472 1110 MobiDBLite consensus disorder prediction 611 677 - -
Csa02g00472 1110 Gene3D Endonuclease Chain A 725 967 - -
Csa02g00472 1110 PANTHER PHOSPHOLIPASE D 27 1107 IPR015679 -
Csa02g00472 1110 MobiDBLite consensus disorder prediction 611 625 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00472 Csa-Chr2:3341776 Csa06g01777 Csa-Chr6:15623047 0 dispersed
Csa02g00472 Csa-Chr2:3341776 Csa02g02386 Csa-Chr2:21161532 7.13E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00472 K01115 - csv:101220522 2304.25