Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00474 ATGGGGCATTTCTCCACCATGTTCAATGGGCTCGCTAGGTCATTTTCGTTCAAGAAAGGTAGAAATTCCGGAAGTCTCGATGATGGGGGAGGGCGAGAATCTGCAAAAGCCATGTTAAAGGATGCCAAAAGGAAAGACTCTATATTATGCACCTCCGGTGTTCTCAATTCAGAAGGTTCGGATACTTTTGCTTCGGTGTTTTCGAAGAAAGGCGAAAAAGGAGTAAACCAAGACTGCTGCATTGTATGGGAGGAATTTGGTTGCCAAGAAGACATGATATTCTGTGGGATTTTCGATGGGCACGGACCATGGGGTCATTTTGTTGCAAAGACGGTAAGAGAATCATTGCCACCTTCTTTGCTGTGCCATTGGCAGCAAGGACTTGCTCAAGCTTTTCTTGACCCAGAATTGGATTCAGAAAAGAAGCATCAACGATATGATATATGGAAGCATTCTTATTTAAGGACTTGTGCTGCCATCGATCGCGAACTCGAGCAGCACCGTAAAATCGATACATTTTACAGTGGAACAACTGCCCTGTCCATTGTTAAACAGGGCGAACTAGTCGTTTTGGCCAACGTAGGTGACTCCCGAGCAGTTTTAGCTACTACTTCAGATGATGGAAGTGTAGTAGCCGTTCAGCTCACAGTTGATTTCAAACCAAACCTACCTCAGGAGACCGAACGGATAATTCAATGCAATGGGAGGGTGTTTTGTTTAAGTGACGAGCCAGGAGTTCACAGAGTCTGGCTTCCAAACGAAGAATCACCGGGATTGGCGATGTCGAGAGCCTTTGGTGATTATTGTATTAAAGATTTTGGACTCATTTCTGTACCAGAAGTGACACATAGAAGTATAACCAGCAGAGACCAATTCATTATATTGGCTACTGATGGGGTATGGGATGTTGTCACCAACCAAGAAGCAGTGGAAATCGTATCATCAACACCGGACAGAGCAAAAGCATCAAAACGTCTGGTTGAGTGTGCGGTTCGGGCATGGAAGCGGAAGAGACGGGGCATTGCAATGGATGATATATCAGCTATTTGCCTCTTCTTCCACTCCTCATCAGAGCAAGAACATCACCTTGTATCCCCACTATAG 1104 45.11 MGHFSTMFNGLARSFSFKKGRNSGSLDDGGGRESAKAMLKDAKRKDSILCTSGVLNSEGSDTFASVFSKKGEKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKTVRESLPPSLLCHWQQGLAQAFLDPELDSEKKHQRYDIWKHSYLRTCAAIDRELEQHRKIDTFYSGTTALSIVKQGELVVLANVGDSRAVLATTSDDGSVVAVQLTVDFKPNLPQETERIIQCNGRVFCLSDEPGVHRVWLPNEESPGLAMSRAFGDYCIKDFGLISVPEVTHRSITSRDQFIILATDGVWDVVTNQEAVEIVSSTPDRAKASKRLVECAVRAWKRKRRGIAMDDISAICLFFHSSSEQEHHLVSPL* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3366498 3369980 + CsaV3_2G006810.1 Csa02g00474 518531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00474 367 ProSiteProfiles PPM-type phosphatase domain profile. 63 353 IPR001932 -
Csa02g00474 367 Gene3D - 50 356 IPR036457 -
Csa02g00474 367 CDD PP2Cc 63 353 IPR001932 -
Csa02g00474 367 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 362 - -
Csa02g00474 367 SMART PP2C_4 52 351 IPR001932 -
Csa02g00474 367 Pfam Protein phosphatase 2C 87 331 IPR001932 -
Csa02g00474 367 PANTHER ALPHABET, ISOFORM E-RELATED 1 362 - -
Csa02g00474 367 SUPERFAMILY PP2C-like 55 354 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00474 Csa-Chr2:3366498 Csa06g01632 Csa-Chr6:14302753 4.05E-29 dispersed
Csa02g00838 Csa-Chr2:7649005 Csa02g00474 Csa-Chr2:3366498 5.42E-117 transposed
Csa03g00360 Csa-Chr3:3006430 Csa02g00474 Csa-Chr2:3366498 1.09E-110 transposed
Csa04g01655 Csa-Chr4:15862813 Csa02g00474 Csa-Chr2:3366498 2.94E-102 transposed
Csa04g02524 Csa-Chr4:25021845 Csa02g00474 Csa-Chr2:3366498 2.84E-84 transposed
Csa06g00378 Csa-Chr6:3142443 Csa02g00474 Csa-Chr2:3366498 5.36E-110 transposed
Csa06g01776 Csa-Chr6:15614294 Csa02g00474 Csa-Chr2:3366498 3.84E-147 transposed
Csa07g00429 Csa-Chr7:3097301 Csa02g00474 Csa-Chr2:3366498 1.43E-106 transposed
Csa01g02727 Csa-Chr1:24177025 Csa02g00474 Csa-Chr2:3366498 2.91E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00474 - - csv:101208725 751.895