Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00478 ATGGCGTCGAGGAACCGCACTTTGCTTTTTAAGAAATACAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCAGCTCTTCCCCTGCTTTTGCATCGCCATCGACTAGCTCAGCTGGTGGTGGCCCGGTGATTGAATTGGTTAGCTCCTCGTTGTTGCATCCGAATCGATCGTATGCTCCATTAAGTACCGAAGATCCGGGTAATTCAAGTAAGGGTGCTCTTACTGTGGGTCTTCCTCCGGCTTGGGTTGATGTATCTGAAGAAATAGCTGCAAATGTGCAGTGTGCACGAGTGAAGATGATGGAGTTGGCTAAAGCTCATGCAAAGGCTTTAATGCCTTCATTTGGTGATGGTAAAGAGGATCAACGATTAATTGAATCTCTCACGCAGGACATAACTAGTTTAATTAAGAAATCAGAGAAAGGACTCAAGAGACTCTTTGTAGCTGGACCTTCAGAAGATTCCAATATCAGAAAAAATGTTCAGCGGTCTCTTGCCACTGATCTTCAGAACCTTTCCATGGAGCTTCGCAAGAAACAATCAACTTATTTAAAGCGCCTACGGCAACAAAAAGAGGAAGGTCAAGATGGGATTGACATAGAGATGAATTTAAATGGAAATCGATCGAGAATGGAGGACGACGATTTAGAACATATGGTATTTAATGAGCATCAGATGGCTAAGCTGCGAAAGAGTGAAGCATTCACCGCAGAAAGAGAGAGAGAGATCAAACAAGTTGTAGAATCCGTGAACGAGCTTGCTCAGATCATGAAGGATCTATCTGTACTTGTCATAGACCAGGGTACCATTATTGATAGAATAGATTACAATATTCAAAATGTTGCGACGACTGTTGAAGAGGGCCTTAAGCAATTGCAGAAGGCAGAGAGAACACAGAAACAAGGAGGGATGGTGATGTGTGCGTCCATGCTCGTTATCATGTGCTTCGTCATGTTGGTTCTTTTGATCCTTAAAACCATACTATTTTGA 990 43.43 MASRNRTLLFKKYRDALRSVRVPTSSSPAFASPSTSSAGGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQCARVKMMELAKAHAKALMPSFGDGKEDQRLIESLTQDITSLIKKSEKGLKRLFVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEGQDGIDIEMNLNGNRSRMEDDDLEHMVFNEHQMAKLRKSEAFTAEREREIKQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVEEGLKQLQKAERTQKQGGMVMCASMLVIMCFVMLVLLILKTILF* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3398835 3403504 + CsaV3_2G006850.1 Csa02g00478 518535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00478 329 PANTHER SYNTAXIN-43-LIKE 1 324 - -
Csa02g00478 329 SMART SynN_4 73 188 IPR006011 GO:0016020
Csa02g00478 329 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 233 295 IPR000727 -
Csa02g00478 329 PANTHER SYNTAXIN 1 324 IPR045242 -
Csa02g00478 329 SMART tSNARE_6 228 295 IPR000727 -
Csa02g00478 329 Pfam SNARE domain 269 321 IPR000727 -
Csa02g00478 329 Gene3D - 79 287 - -
Csa02g00478 329 SUPERFAMILY t-snare proteins 78 288 IPR010989 GO:0016020|GO:0016192
Csa02g00478 329 CDD SNARE_syntaxin16 237 294 - -
Csa02g00478 329 ProSitePatterns Syntaxin / epimorphin family signature. 239 278 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00478 Csa-Chr2:3398835 Csa07g01878 Csa-Chr7:18758684 4.26E-140 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00478 K08489 - csv:101207998 611.298