Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa02g00488 | ATGGCTCATACCAGCAATACTGCAGCTGGAGTTGATAACACCTTTAGAAGGAAATTTGATCGGGAGGAGTATTTGGAACGAGCTCGTGACCGTGAAAAACAGGAGGTTGATAGGGTTAAGTCGAAATTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGATCTTGAGTCCCGATTGGGAAAGACCCAGGTTGTCACTCCAGTTGCACCTCTAAGCCAGCAGGCTGGATATTACTGTTCTGTTTGTGAATGTGTCGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACATCAGAGGGCCTTGGGTATGTCCATGCGGGTAGAGCGGGCATCTCTCGAACAGGTGCAAGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACACCAGGAAGCTTCACAGAGCAAGATCTTGAAGAGCGTATACTAAAGCAGCAACAAGAAGAAGAACAACGAAAGCGCGAGCGTCGAGAAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCCGATGTTGCAGCAATGATGGGATTTGGAGGCTTCCGTTCATCCAAGAAGTGA | 609 | 45.32 | MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRSSKK* | 203 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 3455093 | 3458335 | + | CsaV3_2G006940.1 | Csa02g00488 | 518545 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa02g00488 | 202 | SMART | ZnF_U1_5 | 81 | 115 | IPR003604 | GO:0003676|GO:0008270 | |
| Csa02g00488 | 202 | Gene3D | Classic Zinc Finger | 78 | 116 | - | - | |
| Csa02g00488 | 202 | MobiDBLite | consensus disorder prediction | 137 | 183 | - | - | |
| Csa02g00488 | 202 | Pfam | Zinc-finger of C2H2 type | 84 | 108 | - | - | |
| Csa02g00488 | 202 | PANTHER | ZINC FINGER MATRIN-TYPE PROTEIN 2 | 7 | 202 | IPR040107 | GO:0000398|GO:0005681 | |
| Csa02g00488 | 202 | Coils | Coil | 116 | 136 | - | - | |
| Csa02g00488 | 202 | MobiDBLite | consensus disorder prediction | 22 | 55 | - | - | |
| Csa02g00488 | 202 | MobiDBLite | consensus disorder prediction | 137 | 202 | - | - | |
| Csa02g00488 | 202 | SUPERFAMILY | beta-beta-alpha zinc fingers | 79 | 125 | IPR036236 | - | |
| Csa02g00488 | 202 | Coils | Coil | 144 | 181 | - | - |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 30872 | PF12171 | zf-C2H2_jaz | 1.90E-06 | CL0361 | Csa | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa02g00488 | K12848 | - | csv:101206387 | 348.591 |