Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00488 ATGGCTCATACCAGCAATACTGCAGCTGGAGTTGATAACACCTTTAGAAGGAAATTTGATCGGGAGGAGTATTTGGAACGAGCTCGTGACCGTGAAAAACAGGAGGTTGATAGGGTTAAGTCGAAATTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGATCTTGAGTCCCGATTGGGAAAGACCCAGGTTGTCACTCCAGTTGCACCTCTAAGCCAGCAGGCTGGATATTACTGTTCTGTTTGTGAATGTGTCGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACATCAGAGGGCCTTGGGTATGTCCATGCGGGTAGAGCGGGCATCTCTCGAACAGGTGCAAGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACACCAGGAAGCTTCACAGAGCAAGATCTTGAAGAGCGTATACTAAAGCAGCAACAAGAAGAAGAACAACGAAAGCGCGAGCGTCGAGAAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCCGATGTTGCAGCAATGATGGGATTTGGAGGCTTCCGTTCATCCAAGAAGTGA 609 45.32 MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRSSKK* 203
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 3455093 3458335 + CsaV3_2G006940.1 Csa02g00488 518545
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00488 202 SMART ZnF_U1_5 81 115 IPR003604 GO:0003676|GO:0008270
Csa02g00488 202 Gene3D Classic Zinc Finger 78 116 - -
Csa02g00488 202 MobiDBLite consensus disorder prediction 137 183 - -
Csa02g00488 202 Pfam Zinc-finger of C2H2 type 84 108 - -
Csa02g00488 202 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 7 202 IPR040107 GO:0000398|GO:0005681
Csa02g00488 202 Coils Coil 116 136 - -
Csa02g00488 202 MobiDBLite consensus disorder prediction 22 55 - -
Csa02g00488 202 MobiDBLite consensus disorder prediction 137 202 - -
Csa02g00488 202 SUPERFAMILY beta-beta-alpha zinc fingers 79 125 IPR036236 -
Csa02g00488 202 Coils Coil 144 181 - -
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30872 PF12171 zf-C2H2_jaz 1.90E-06 CL0361 Csa TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00488 K12848 - csv:101206387 348.591