Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00502 ATGGAATTTGAACAACAACAAGAAGCACTTCTGTTGGAAAAAGTCTGTGCCCTTTACAACCAAATCTCAAGCCTTTCTAGCCTTAAGCCTTGTAAAAATGTCGACACTCTTTTCACTCAACTCGTCCTCACGTGCTCACAGCACCCACCTCCTCCTATTGGCTTTGATATTGCTTCTTTGTCTCAGCCACTTCGAGCCATGAGGGCTCATCTCATTCAACTTTGTGCTCAAGCTGAGGCTCTTCTTGAACTTCATTTCTCTTCCCTTTTGGCTTCTTCTTTTCATCATCCTATTTCTAATTTGTCTATCTTCCCTTACTACTCTAATTACTTGAAGCTTTCCCTTCTTGAGTTTGATATTCTTCGATCTCATTCTCGTCGTATCCCCGATAAAGTTGCCTTTGTTGGCTCCGGTCCCCTCCCGCTCTCCTCCATTGTCTTGGCGTCTATTCATCTTAAGGGTACTATTTTCCACAACTTTGACATTGATCCAACAGCAAACACCATGGCAAGTCAATTGGTTTGCTCTGACCCAGACTTATCACAAAGAATGATATTTCACACAAAAGATGTAATGGAAGTAACAAAGGGATTAAAAGATTATGAAGTAGTGTTCTTAGCAGCATTAGTTGGATTAGGAGAGGAAGAAAAAGGAAGAGTTTTAAAGCATTTGGGGAAACATATGGCAGCTGGTTCATATTTGATGCTAAGAAGTGCTCATGGAGCAAGAGCATTTTTGTACCCTGTTGTTGATATTTGTACTGTTGAAGCTTCTGGATTTGAGATTTTGTCTGTGTTCCATCCCACCGATGAAGTTATTAACTCTGTGGTTATTGCAAGGAAGAAAGTCATGTTCGATCAAAGCTCGGACGAGGACGAGGACGAGGACGAGAAGCAAGGTATTTTAGTCAATACTTCTTCTATTGTGTTGGCTGAGAAATGCTCTGGGTTTAATGGCTTTACTCCCATGATTGAAGAGCCACTTTCTTGA 990 41.21 MEFEQQQEALLLEKVCALYNQISSLSSLKPCKNVDTLFTQLVLTCSQHPPPPIGFDIASLSQPLRAMRAHLIQLCAQAEALLELHFSSLLASSFHHPISNLSIFPYYSNYLKLSLLEFDILRSHSRRIPDKVAFVGSGPLPLSSIVLASIHLKGTIFHNFDIDPTANTMASQLVCSDPDLSQRMIFHTKDVMEVTKGLKDYEVVFLAALVGLGEEEKGRVLKHLGKHMAAGSYLMLRSAHGARAFLYPVVDICTVEASGFEILSVFHPTDEVINSVVIARKKVMFDQSSDEDEDEDEKQGILVNTSSIVLAEKCSGFNGFTPMIEEPLS* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3536310 3538376 + CsaV3_2G007090.1 Csa02g00502 518559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00502 329 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 3 286 IPR004298 GO:0030410|GO:0030418
Csa02g00502 329 Gene3D Vaccinia Virus protein VP39 12 283 IPR029063 -
Csa02g00502 329 Pfam Nicotianamine synthase protein 5 283 IPR004298 GO:0030410|GO:0030418
Csa02g00502 329 PANTHER NICOTIANAMINE SYNTHASE 3 1 285 IPR004298 GO:0030410|GO:0030418
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00502 K05953 NAS; nicotianamine synthase [EC:2.5.1.43] - csv:101203651 603.979
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02140 Csa-Chr1:18593279 Csa02g00502 Csa-Chr2:3536310 5.98E-92 dispersed
Csa01g02710 Csa-Chr1:24042009 Csa02g00502 Csa-Chr2:3536310 1.91E-127 dispersed
Csa02g00501 Csa-Chr2:3524496 Csa02g00502 Csa-Chr2:3536310 1.26E-87 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g02710 CCT 1 274 Nicotianamine Synthase Gene Family AT1G09240 58.2 1.9e-91 332.8
Csa02g00502 . 7 281 Nicotianamine Synthase Gene Family AT1G09240 58.0 2.2e-87 319.3
Csa01g02140 . 18 281 Nicotianamine Synthase Gene Family AT1G09240 56.3 1.5e-75 280.0
Csa02g00501 CCT 6 251 Nicotianamine Synthase Gene Family AT1G09240 57.9 9.4e-75 277.3
Csa01g02710 CCT 3 274 Nicotianamine Synthase Gene Family AT1G56430 60.4 1.5e-96 349.7
Csa02g00502 . 7 281 Nicotianamine Synthase Gene Family AT1G56430 59.4 1.9e-91 332.8
Csa01g02140 . 18 285 Nicotianamine Synthase Gene Family AT1G56430 55.1 5.8e-80 294.7
Csa02g00501 CCT 1 251 Nicotianamine Synthase Gene Family AT1G56430 56.3 7.3e-75 277.7
Csa01g02710 CCT 1 274 Nicotianamine Synthase Gene Family AT5G04950 56.3 1.1e-91 333.6
Csa02g00502 . 7 281 Nicotianamine Synthase Gene Family AT5G04950 58.1 2.6e-88 322.4
Csa02g00501 CCT 1 251 Nicotianamine Synthase Gene Family AT5G04950 54.7 3.2e-75 278.9
Csa01g02140 . 18 282 Nicotianamine Synthase Gene Family AT5G04950 50.9 1.2e-72 270.4
Csa01g02710 CCT 1 274 Nicotianamine Synthase Gene Family AT5G56080 56.2 5.2e-89 324.7
Csa02g00502 . 10 281 Nicotianamine Synthase Gene Family AT5G56080 57.9 7.4e-88 320.9
Csa02g00501 CCT 1 251 Nicotianamine Synthase Gene Family AT5G56080 54.9 2.1e-74 276.2
Csa01g02140 . 18 282 Nicotianamine Synthase Gene Family AT5G56080 51.5 2.2e-71 266.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00502 Csa_Chr02 FPKM 0.482456 0.283183 2.576708 2.567198 1.443831 1.684672 0.38271 0.018209 0.0 0.113809