Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00502 ATGGAATTTGAACAACAACAAGAAGCACTTCTGTTGGAAAAAGTCTGTGCCCTTTACAACCAAATCTCAAGCCTTTCTAGCCTTAAGCCTTGTAAAAATGTCGACACTCTTTTCACTCAACTCGTCCTCACGTGCTCACAGCACCCACCTCCTCCTATTGGCTTTGATATTGCTTCTTTGTCTCAGCCACTTCGAGCCATGAGGGCTCATCTCATTCAACTTTGTGCTCAAGCTGAGGCTCTTCTTGAACTTCATTTCTCTTCCCTTTTGGCTTCTTCTTTTCATCATCCTATTTCTAATTTGTCTATCTTCCCTTACTACTCTAATTACTTGAAGCTTTCCCTTCTTGAGTTTGATATTCTTCGATCTCATTCTCGTCGTATCCCCGATAAAGTTGCCTTTGTTGGCTCCGGTCCCCTCCCGCTCTCCTCCATTGTCTTGGCGTCTATTCATCTTAAGGGTACTATTTTCCACAACTTTGACATTGATCCAACAGCAAACACCATGGCAAGTCAATTGGTTTGCTCTGACCCAGACTTATCACAAAGAATGATATTTCACACAAAAGATGTAATGGAAGTAACAAAGGGATTAAAAGATTATGAAGTAGTGTTCTTAGCAGCATTAGTTGGATTAGGAGAGGAAGAAAAAGGAAGAGTTTTAAAGCATTTGGGGAAACATATGGCAGCTGGTTCATATTTGATGCTAAGAAGTGCTCATGGAGCAAGAGCATTTTTGTACCCTGTTGTTGATATTTGTACTGTTGAAGCTTCTGGATTTGAGATTTTGTCTGTGTTCCATCCCACCGATGAAGTTATTAACTCTGTGGTTATTGCAAGGAAGAAAGTCATGTTCGATCAAAGCTCGGACGAGGACGAGGACGAGGACGAGAAGCAAGGTATTTTAGTCAATACTTCTTCTATTGTGTTGGCTGAGAAATGCTCTGGGTTTAATGGCTTTACTCCCATGATTGAAGAGCCACTTTCTTGA 990 41.21 MEFEQQQEALLLEKVCALYNQISSLSSLKPCKNVDTLFTQLVLTCSQHPPPPIGFDIASLSQPLRAMRAHLIQLCAQAEALLELHFSSLLASSFHHPISNLSIFPYYSNYLKLSLLEFDILRSHSRRIPDKVAFVGSGPLPLSSIVLASIHLKGTIFHNFDIDPTANTMASQLVCSDPDLSQRMIFHTKDVMEVTKGLKDYEVVFLAALVGLGEEEKGRVLKHLGKHMAAGSYLMLRSAHGARAFLYPVVDICTVEASGFEILSVFHPTDEVINSVVIARKKVMFDQSSDEDEDEDEKQGILVNTSSIVLAEKCSGFNGFTPMIEEPLS* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3536310 3538376 + CsaV3_2G007090.1 Csa02g00502 518559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00502 329 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 3 286 IPR004298 GO:0030410|GO:0030418
Csa02g00502 329 Gene3D Vaccinia Virus protein VP39 12 283 IPR029063 -
Csa02g00502 329 Pfam Nicotianamine synthase protein 5 283 IPR004298 GO:0030410|GO:0030418
Csa02g00502 329 PANTHER NICOTIANAMINE SYNTHASE 3 1 285 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02140 Csa-Chr1:18593279 Csa02g00502 Csa-Chr2:3536310 5.98E-92 dispersed
Csa01g02710 Csa-Chr1:24042009 Csa02g00502 Csa-Chr2:3536310 1.91E-127 dispersed
Csa02g00501 Csa-Chr2:3524496 Csa02g00502 Csa-Chr2:3536310 1.26E-87 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00502 K05953 - csv:101203651 603.979