Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00505 ATGGAAGAGTTTTACAGGCTTAACAACCCTGTTATAACCTCATATTCTAATGGTGTTGTTGGAAGTGAAGCCATTGCAAGTACAAGCTGTGGAGAGATTCATGAAGCTTTAATGGTGGATGATGATATGCTTCAGCTTGAGGCTGAGGTTACAACTGGTTTGAACATGTCTGACATGATCAAAACTCAAATTGTCAACCATCCCCTTTATCCCAAACTTGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGTCGTGAAAATCACCCTTCTAGATCCTCTATTGAGTTGGGAGCTGATCCTCAACTAGACAACTTCATGGAATCATATTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAACCATTTGATGAAGCAACTATGTTCTTGACCAACATTGAATTGGAGCTAAGCAATTTGTGTAAAGGATCGTTTACCATGATGTCGGATTCTCGCTCCGCCATGAATGATGAAGTATCCGGGACTCCAGAGGAAGAACCAAGCAGCTACGAGGAGGTGGAAATGCCGAGGAATCACGAGCCGTTCTGCATACGAAAAACAAACCAAGACCTCAAAGAAATGCTGCTGAAGAAATACAGTGGCTATCTCAGCAGTTTGAAAAAGGAATTCTTGAAGAAAAGAAAGAAAGAAAAGCTACCAAAAGATGCAAGAATGGCTTTACTTGACTGGTGGAATACTCATTACAAATGGCCTTATCCTACAGAAGAGGAAAAATCAAAACTATCTGTTACTACTGGTCTAGACCAAAAGCAAATTAATAACTGGTTCATAAACCAGAGAAAGCGACATTGGAAGCCACCCGAAGACATGCGATTTGTGCTCATGGACGGAGTCGGGGCCGGGGAATGCATGAAAGGATCAAATTTTTATGACAATGGAGAAACTGGAAGCCATGTAATTTGA 966 40.99 MEEFYRLNNPVITSYSNGVVGSEAIASTSCGEIHEALMVDDDMLQLEAEVTTGLNMSDMIKTQIVNHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRENHPSRSSIELGADPQLDNFMESYCEVLHQYKNELSKPFDEATMFLTNIELELSNLCKGSFTMMSDSRSAMNDEVSGTPEEEPSSYEEVEMPRNHEPFCIRKTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALLDWWNTHYKWPYPTEEEKSKLSVTTGLDQKQINNWFINQRKRHWKPPEDMRFVLMDGVGAGECMKGSNFYDNGETGSHVI* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3550422 3554566 - CsaV3_2G007120.1 Csa02g00505 518562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00505 321 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
Csa02g00505 321 Pfam ELK domain 204 225 IPR005539 GO:0003677
Csa02g00505 321 Gene3D - 222 293 - -
Csa02g00505 321 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
Csa02g00505 321 CDD homeodomain 236 287 IPR001356 GO:0003677
Csa02g00505 321 MobiDBLite consensus disorder prediction 168 189 - -
Csa02g00505 321 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 298 - -
Csa02g00505 321 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 298 - -
Csa02g00505 321 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677|GO:0005634
Csa02g00505 321 SMART HOX_1 226 291 IPR001356 GO:0003677
Csa02g00505 321 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
Csa02g00505 321 SUPERFAMILY Homeodomain-like 226 296 IPR009057 -
Csa02g00505 321 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Csa02g00505 321 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981|GO:0006355
Csa02g00505 321 SMART ELK_2 204 225 IPR005539 GO:0003677
Csa02g00505 321 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Csa02g00505 321 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00505 Csa-Chr2:3550422 Csa02g01760 Csa-Chr2:17169389 1.72E-74 dispersed
Csa02g00505 Csa-Chr2:3550422 Csa05g02319 Csa-Chr5:25644124 1.77E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30874 PF03791 KNOX2 3.70E-21 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00505 - - csv:101203403 624.78