Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00519 ATGCAATCTGGAATGAACCCTCTTGTTCTTCTCACTTATAGACAGATTTTTGGCACTTTGGCCATTGCTCCTTTTGCCTTTCTTACTGAAAGGAAAACAAGGCCAAAGATCACTTTTGCAGTTTTGTTTCAAATCTTTGTGTGTTCCTTATCAGGAGCAACAGGGAATCAGATATTCTTCTTTGTTGGGTTAAAGTACACAAACCCAACAATTTCAAGTGCTATGGCCAATGTTCTTCCAGCTGCTACTTTTATTCTTGCTGTTCTCTTCAGACAAGAGAGTGTGAGAATCAAGACCAAATCTGGTTTTGCAAAGGTAATAGGGACAATTGTGTGTGTAAGTGGGGCAATGCTACTGTCTTTCTACCATGGACACACCATCGACTTAGGTGAATCAAGAATTCATTGGTCATATGTTGAGAGATTGATCAAGGAAACAACCCCAACGAATGGTCAAGGAAAGCACGTACTCGGTTCGATTTTGTTGCTTTTGAGTTCTTTTTCATGGGCATTATGGTTTGTCATCCAAGCAAGATTGAGTGTCAAGTTCAAAGCTCCCTATACAAGTACTGCATTGTTGTGCTTCATGGCCTTTTTTCAATGTGGACTTATAGCTGTGATTTCAGAGCACAATATTGCTGCTTGGTCTTTGAAAAGTTCAATCCGACTCGTCGCAGCTCTTTACGCAGGAGTTGTGTGTTCTGCATTGACATTTAGTATCACTTCATGGACTATACAAAGGAAAGGCCCTCTCTATGTCTCCATTTTCTCCCCTTTATTGCTTATCATTGTGGCCATAATCAGTTGGGCTCTCCTCCATCAACAACTCCACGCTGGAACTGTTATTGGCTCTGTTTTGATAATCACTGGGCTTTATGCTGTGCTATGGGGAAAATCCAAAGAGATGAAAGTAGAAGATGCTCAACACAACATGGAAAAGCCAACAATAGAAAAGCATAATGGAAGTCATATTATTGAAGAGAAGGATGATTTTGAATTGCAAATCACAAACATCAATGTGCTTATGTGCGGTCTTGTGATGATTAATTTACCATCACCAGCACACAACATATTCATAGGCTACATTCTTGCCATCTTTGTCTTTCAAACGAATGCCTTTTCACTTCAGGCATTTTTTACAATTAAATTGGATCACAAACTTGCACATTCAATAGCAGATTATCATTTGTTGAGAATTGGTTTTACCAAGATCACCGTTGAGCATGATCTTAGTCGTTCATGGATTGTGCTAGTTTATGTTGCTCGGATGAAGACTCCTCTCTTGTGTAGCCTATCCAGGGATATGTGTTTGTTTGCAGATCTAAAGACGATGGCAGCGATTTACAGCCTCTACATCATCAATAAATCTGGTGGTTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGATACGAATGACAGTTTGAGAGTGGCGAGTTTGTGGCATTCTATGCATGCCATTTCCCAGCAGCTTTCGCCTATAGCTGGTTGTTCGGGTGTTGAACTTCTTGAAGCTGACACTTTCGATCTCCATTGCTTCCAGTCACTCACTGGGACAAAGTTTTTTGTTGTGTGTGAACCTGGGACTCAGCACATGGAGAGTCTTCTGAAGTACATTTATGAACTATACACAGATTTTGTATTGAAGAATCCATTCTACGAGATGGAGATGCCTATACGGTGCGAGCTCTTTGACATCAACCTAGCGCAGGCAGTGCAAAAAGATCGTGTTGCTTTGCTTGGCCGATGA 1755 40.91 MQSGMNPLVLLTYRQIFGTLAIAPFAFLTERKTRPKITFAVLFQIFVCSLSGATGNQIFFFVGLKYTNPTISSAMANVLPAATFILAVLFRQESVRIKTKSGFAKVIGTIVCVSGAMLLSFYHGHTIDLGESRIHWSYVERLIKETTPTNGQGKHVLGSILLLLSSFSWALWFVIQARLSVKFKAPYTSTALLCFMAFFQCGLIAVISEHNIAAWSLKSSIRLVAALYAGVVCSALTFSITSWTIQRKGPLYVSIFSPLLLIIVAIISWALLHQQLHAGTVIGSVLIITGLYAVLWGKSKEMKVEDAQHNMEKPTIEKHNGSHIIEEKDDFELQITNINVLMCGLVMINLPSPAHNIFIGYILAIFVFQTNAFSLQAFFTIKLDHKLAHSIADYHLLRIGFTKITVEHDLSRSWIVLVYVARMKTPLLCSLSRDMCLFADLKTMAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR* 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3652692 3662237 - CsaV3_2G007260.1 Csa02g00519 518576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00519 584 SUPERFAMILY Multidrug resistance efflux transporter EmrE 13 121 - -
Csa02g00519 584 CDD TRAPPC4_synbindin 448 573 - -
Csa02g00519 584 Pfam EamA-like transporter family 157 295 IPR000620 GO:0016020|GO:0016021
Csa02g00519 584 Pfam EamA-like transporter family 3 119 IPR000620 GO:0016020|GO:0016021
Csa02g00519 584 PANTHER WAT1-RELATED PROTEIN 1 312 IPR030184 GO:0016021|GO:0022857
Csa02g00519 584 Pfam Sybindin-like family 447 576 IPR007233 GO:0016192|GO:0030008
Csa02g00519 584 SUPERFAMILY Multidrug resistance efflux transporter EmrE 219 300 - -
Csa02g00519 584 PANTHER WAT1-RELATED PROTEIN 1 312 - -
Csa02g00519 584 Gene3D - 445 576 - -
Csa02g00519 584 SUPERFAMILY SNARE-like 444 576 IPR011012 -
Csa02g00519 584 SMART Sybindin_2 447 577 IPR007233 GO:0016192|GO:0030008
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01566 Csa-Chr1:11299812 Csa02g00519 Csa-Chr2:3652692 6.09E-136 dispersed
Csa02g00519 Csa-Chr2:3652692 Csa03g03689 Csa-Chr3:32827816 6.76E-74 dispersed
Csa05g00099 Csa-Chr5:494629 Csa02g00519 Csa-Chr2:3652692 1.72E-16 dispersed
Csa02g00519 Csa-Chr2:3652692 Csa02g02098 Csa-Chr2:19067121 3.05E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00519 - - csv:101217670 660.218