Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00546 ATGTTTGATTGTGGTTACAAGTCACAACTGATGGGTGGTCAGCGTGAAAAGTTTGTGAGGTTGGATGACTTGGACTCCAGATTGTCATCACCTTCTGATAGTGGAATGAGAAGATGTGGGTTTAATATAGATGGATTTAACCGTGCAGTTCATGGAAATGATAAGCCGTCTGGATCCTTTAAGAGAGGAATGAGGAAAGGGTCCGAAGGACTTAAATCAATTGGCCGATCGCTCAAGTTTGGGGTGTCTCGAGCTGTATTTCCGGAGGATCTTAAAGAGTCAAAGAAGCAAATCTTTGATCCTCAAGACAAATTGCTCTTATTTTTGAATAAACTTTTTGTCATATCATGTATTTTGGCAGTATCTGTGGACCCACTATTCTTTTATGTTCCTGTCATTAACCAAAGCTCAAACTGTCTTGGAATTGATAAAAAACTGGCAATTACAGTGACAACATTGCGGACAATCATTGATGTCTTCTATCTTATTCATATGGCTCTCCAATTCCGGACAGCTTATATTGCTCCATCATCTCGGGTGTTTGGGAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCTAAGCGATACTTGCGGCGGTATTTCATCGTTGACCTGGTGTCTGTGCTGCCCCTGCCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAGAGGTTCAGATGTATATGTGACAAAACAGGCCCTTCTTTTAATTGTATTCCTTCAATATATCCCAAGATTTCTTAGAATGTTACCGTTGGCTTCAGAGTTGAAAAGGACAACAGGTGTTTTTGCAGAAACTGCTTGGGCAGGTGCCGCGTATTATTTGCTATTATATATGCTTGCAAGCCATATAGTTGGAGCATTATGGTACTTGTTAGCTGTGGAACGGAATGATACTTGCTGGCAGAAGTTTTGTAATGCCCCTTGCAAGAAAGATTTCTTGTATTGTGGTAACCAAAACATGGAAGGTTATGCAAGTTGGAACCAGACAGGTGTTGATGGCCTTAAGTCAAGTTGCAAACCTGCTGATGAAAATAAGCAGTTTGATTTTGGAATCTTTCAACAGGCTTTGTCCTCTGGTATTGCTGCATCAAAGAATTTCATCGGAAAATATTGTTACTGTCTGTGGTGGGGACTACAAAATTTAAGTACGCTTGGGCAGGGGCTAAAAACAAGCACGTACCCGGGTGAAGTGATCTTTTCTATAGCATTAGCTGTACTTGGTCTCATTCTCTTTGCTCTTCTTATTGGCAATATGCAGACTTATCTTCAATCTCTAACCATAAGACTTGAGGAAATGAGGGTGAAAAGGCGTGATTCAGAGCAGTGGATGCATCACCGCTTGCTGCCGCAGGAACTTCGGGAGAGAGTCCGGCGTTATGACCAGTACAAGTGGTTGGAGACTCGTGGGGTGGATGAACAAAGCTTGGTTCAAACTCTACCTAAGGATCTTAGAAGAGATATTAAGCGGCATCTTTGTCTGGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAATATGGACGAGAGGCTGCTTGATGCTATCTGTGAGCGGCTGAAACCATGTTTGTTTACGGAGTACACTTACATAGTTCGTGAAGGCGATCCAGTTGATGAGATGCTTTTCATTATACGTGGCCGGCTTGAGAGTGTGACCACAGATGGTGGACGTAGTGGATTTTTCAACCGTACCTTTCTGAAAGAAGGTGATTTTTGTGGTGAAGAGCTTTTGACCTGGGCTCTGGACCCAAAATCTGGTTCGAATCTTCCATCTTCTACAAGGACAGTAAAGGCCATTACAGAGGTTGAGGCTTTTGCTCTTGTTGCTGAAGAGTTGAAATTTGTGGCCAGCCAGTTCAGGCGCCTTCACAGTAGACAGGTGCAACATACCTTCCGATTCTACTCACAGCAATGGAGGACCTGGGCTGCTTGCTTCATCCAAGCGGCATGGCGTCGGTATTCCAAGAGAAAGTCTATGGAACTTCGTCAAAAGGAAGAAGCTGCAGCAGAAGAGGGATCTCAAACTGCCACAAGTGGAGGCTCTTATAGCATTCGTGCAACTTTCTTAGCTTCCAAATTTGCTGCCAATGCTCTCCGAGGCGTTCAGCGATATCGAAACGCAAAGAGCGCTCAGGAATTGATAAAATTGCAGAAACCTCCAGAGCCAGATTTTAGTGCTGATGATGCAGATTGA 2196 43.44 MFDCGYKSQLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVHGNDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKQIFDPQDKLLLFLNKLFVISCILAVSVDPLFFYVPVINQSSNCLGIDKKLAITVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIVDLVSVLPLPQIVVWRFLQRSRGSDVYVTKQALLLIVFLQYIPRFLRMLPLASELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQKFCNAPCKKDFLYCGNQNMEGYASWNQTGVDGLKSSCKPADENKQFDFGIFQQALSSGIAASKNFIGKYCYCLWWGLQNLSTLGQGLKTSTYPGEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKSMELRQKEEAAAEEGSQTATSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD* 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3839081 3850423 - CsaV3_2G007530.1 Csa02g00546 518603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00546 731 CDD CAP_ED 504 635 IPR000595 -
Csa02g00546 731 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa02g00546 731 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa02g00546 731 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa02g00546 731 PRINTS EAG/ELK/ERG potassium channel family signature 373 390 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa02g00546 731 PRINTS EAG/ELK/ERG potassium channel family signature 399 410 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa02g00546 731 PRINTS EAG/ELK/ERG potassium channel family signature 417 426 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa02g00546 731 PRINTS EAG/ELK/ERG potassium channel family signature 467 474 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa02g00546 731 Gene3D Helix hairpin bin 432 495 - -
Csa02g00546 731 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 12 728 - -
Csa02g00546 731 SUPERFAMILY Voltage-gated potassium channels 101 426 - -
Csa02g00546 731 Pfam Cyclic nucleotide-binding domain 529 614 IPR000595 -
Csa02g00546 731 SUPERFAMILY cAMP-binding domain-like 433 624 IPR018490 -
Csa02g00546 731 Pfam Ion transport protein 109 430 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa02g00546 731 SMART cnmp_10 504 635 IPR000595 -
Csa02g00546 731 ProSiteProfiles cAMP/cGMP binding motif profile. 504 588 IPR000595 -
Csa02g00546 731 Gene3D - 110 429 - -
Csa02g00546 731 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 728 - -
Csa02g00546 731 Gene3D Jelly Rolls 502 622 IPR014710 -
Csa02g00546 731 ProSiteProfiles IQ motif profile. 640 669 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00546 Csa-Chr2:3839081 Csa03g03885 Csa-Chr3:34127090 0 dispersed
Csa06g02573 Csa-Chr6:22724202 Csa02g00546 Csa-Chr2:3839081 4.52E-102 dispersed
Csa02g00546 Csa-Chr2:3839081 Csa05g00059 Csa-Chr5:292711 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00546 K05391 - csv:101219180 1426.38