Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00579 ATGGGTTTTGTTGAAGAATACTTGCCAGCAATGGCTATGTTTGGGCTTCAAGTGACTTATGCCATAATGGCTCTTCTCTCTAGGGCTGCCCTTTTGAAGGGCATGAGTCCTAGAGTTTTTGTTGTTTATAGGCAGGCCGTTGCCACTCTCTTTATCGCACCCATTGCTTATTTTTCCAGGTCGAAATCTAGGAGGGTCTCTTTGAACTTGAGGAGCTTTTCTCTTATCTTCCTTGCTTCTCTTGTCGGTGTAACGATGAACCAAAACGTTTACTTTGAGGGAGTTTTTTTAGTTAGCTCGTCAATGGCGACGGCAATGACTAATTTGATTCCGGCGGTGACGTTTGTAATAGCAACAATTGTTGGGATGGAGAATTTGAAGATGGGAAGCTTGAGGAGCATGGCAAAGATTGGAGGGACAGTGGTTTGTGTGAGTGGAGCCATGTGCATGGCTCTTCTAAGAGGACCAAAGCTTCTCAATTCAACACAAGATTTTGGGTTGAAATCTACAATATTTGGTGTGGAAATTGGAGGCCAAACTGCTTGGTTATTGGGTTCCTTGTGTCTCTTTTGCAGTTGCTGTTGCTGGTCAATTTGGTTGATTTTGCAGGTACCAGCTTCAGCTAGCTATCCAGACAACTTATCTTTATCGGCATGGATGTGTTTGATGGGTACCATTCAATCCATCATTCTTACTCTATTGGTTGAACCAATCAATCTACAAACTTGGAAAATACATTCAACTATTGAACTTATTTGTTATCTTTTCTCCGGAATTGTTGGGTCAGGTGTTGCCTTCTTTGTTCAAGCTTGGTGTGTTTCAAAGAGAGGACCTGTCTTCTCAGCAATGTTCAACCCTCTCTGCACCATTGTTACAACCATTTTGGCTGCCATTGTTCTTCATGAGGAAATATTTACTGGAAGCTTGTTGGGGGGTGTGGCTGTGATTATTGGATTGTACATTGTTCTTTGGGGAAAAGCGAAAGATTATGCGAAGGTTGGAGCCAAATTAGAAAAGCCAAGTCTTGATCAAAAAGAAGAGGTCTGTGAATCACTTGAGAGAAGCACTGATCAAATTGATTTGGAGGAACCACTTTTGTCTAAAGAATAA 1110 41.8 MGFVEEYLPAMAMFGLQVTYAIMALLSRAALLKGMSPRVFVVYRQAVATLFIAPIAYFSRSKSRRVSLNLRSFSLIFLASLVGVTMNQNVYFEGVFLVSSSMATAMTNLIPAVTFVIATIVGMENLKMGSLRSMAKIGGTVVCVSGAMCMALLRGPKLLNSTQDFGLKSTIFGVEIGGQTAWLLGSLCLFCSCCCWSIWLILQVPASASYPDNLSLSAWMCLMGTIQSIILTLLVEPINLQTWKIHSTIELICYLFSGIVGSGVAFFVQAWCVSKRGPVFSAMFNPLCTIVTTILAAIVLHEEIFTGSLLGGVAVIIGLYIVLWGKAKDYAKVGAKLEKPSLDQKEEVCESLERSTDQIDLEEPLLSKE* 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4118501 4123467 + CsaV3_2G007860.1 Csa02g00579 518636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00579 369 Coils Coil 342 362 - -
Csa02g00579 369 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020|GO:0016021
Csa02g00579 369 Pfam EamA-like transporter family 12 130 IPR000620 GO:0016020|GO:0016021
Csa02g00579 369 PANTHER WAT1-RELATED PROTEIN 10 346 IPR030184 GO:0016021|GO:0022857
Csa02g00579 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 224 327 - -
Csa02g00579 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 152 - -
Csa02g00579 369 PANTHER WAT1-RELATED PROTEIN 10 346 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01932 Csa02g00579 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00579 Csa-Chr2:4118501 Csa05g00146 Csa-Chr5:801108 3.68E-72 dispersed
Csa01g01932 Csa-Chr1:16213438 Csa02g00579 Csa-Chr2:4118501 1.10E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00579 - - csv:101213601 707.983