Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00587 ATGGATCATGATGAACAAAGGAACGGCAAAGATTTCATCTTCAAATCAAAGCTCCCAGACATTTACATCCCAAACCACCTCCCTCTCCATACCTATTGCTTTGAACACCTCTCCCAATTCCAACACCGGCCTTGCCTCATCAACGGCACCACCGGCCGCATCCACACCTACGCCGAGGTCAACCTAGCAGCCAGACGTTTCGCTGCGGGGCTGAGCAAGATCGGTGTCGGACAAGGTGACGTGATAATGCTCATGCTCCAGAATAGCCCCGAGTTCGTGTTTGCGTTCCTCGGTGCATCTTTCGCCGGTGCAATTGCCACGACCGCGAACCCGTTGTATAAGCCTGGAGAGATAGTGAAGCAGGCGGTGGCAGCGAAGGTGAAGGTGATAATTACACAAGGAGAGTTTGTGGAGAAGGTGTGGGAATTTGCGGTGGAACATGGGGTGAAGATATTGTGTACGGATTCTTCGTCGGCCTCGGAGTCAGCGGGTTGTTTGAAATTCTCGGAGGTTATGGAGGCCGATGAGAATGAGATTCCGGCGGTGAAGATTAATTCAAGTGATGTTGTTGCTCTTCCTTTCTCGTCGGGAACTACCGGAGTTCCAAAAGGAGTTATGCTAACGCATAAATCTCTTGTTACAAGCGTAGCTCAGCAGGTGGATGGAGAGAATCCAAATGTAAACATGAATAGGAAGGATGTGATCATATGTGTTCTTCCTTTATTCCATATCTATTCTCTCAACTCCGTTCTCCTGTGTGGACTACGTGTCGGCGCTGCCATTCTCATCCTTCAAAAGTACGACGTCTCCTCTCTTCTCCGTCTCATTCAAACCCACAAAGCCACAATTGCTCCATTTGTCCCTCCCATCGTCTTGGACTTTGCCAAAAACCCTGACATCCATCGTTACGACTTGTCGTCTATTCGAATTGTCATGTCGGGTGCTGCCCCCATGGGGAAGGACCTCGAGGACACCGTCAAAGCTAAGCTCCCCAATGCCATTCTCGGACAGGGGTATGGAATGACGGAGGCAGGGCCAGTGCTGTCGATGTGTTTGGGATTTGCAAAGGAAGCATTCAAGGTAAAATCAGGTGCATGCGGGACAGTAGTAAGGAATGCTGAGATGAAGATCATACACCCTCAAACTTCTCTTTCTTTGCCTCGTAATAACCCTGGTGAGATCTGCATACGTGGCCCCCAGATCATGAAAGGTTACCTTAATAACAAAGAAGCAACCGAGAAGACTATAGACAAAGATGGGTGGCTCCACACAGGAGACTTAGGGTACATTGACGATGACGATGAGATCTTCATTGTCGATCGATTGAAGGAACTTATTAAATACAAAGGATACCAAGTTGCTCCAGCTGAGCTTGAAGCTCTCTTGACTTCAAACCCTAACATTACTTCAGCAGCTGTCATACCTATGGAAGATGAAGCAGCAGGAGAGATCCCTGTTGCATTTGTTGTTAGATCTAAAGGCTCCAAAATTAGTGAGAATGACATCAAAAACTATATTTCAGATCAGGTTATATATTACAAAAAAATCAGAAAGGTTTTCTTTGTGGACTCAATTCCAATGGCTCCTTCAGGCAAGATATTGAGGAAAATTTTAAAAGCTCAGTTGGAGGCTGGTGTATTTTAA 1644 46.78 MDHDEQRNGKDFIFKSKLPDIYIPNHLPLHTYCFEHLSQFQHRPCLINGTTGRIHTYAEVNLAARRFAAGLSKIGVGQGDVIMLMLQNSPEFVFAFLGASFAGAIATTANPLYKPGEIVKQAVAAKVKVIITQGEFVEKVWEFAVEHGVKILCTDSSSASESAGCLKFSEVMEADENEIPAVKINSSDVVALPFSSGTTGVPKGVMLTHKSLVTSVAQQVDGENPNVNMNRKDVIICVLPLFHIYSLNSVLLCGLRVGAAILILQKYDVSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKDLEDTVKAKLPNAILGQGYGMTEAGPVLSMCLGFAKEAFKVKSGACGTVVRNAEMKIIHPQTSLSLPRNNPGEICIRGPQIMKGYLNNKEATEKTIDKDGWLHTGDLGYIDDDDEIFIVDRLKELIKYKGYQVAPAELEALLTSNPNITSAAVIPMEDEAAGEIPVAFVVRSKGSKISENDIKNYISDQVIYYKKIRKVFFVDSIPMAPSGKILRKILKAQLEAGVF* 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4235452 4240963 + CsaV3_2G007940.1 Csa02g00587 518644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00587 547 SUPERFAMILY Acetyl-CoA synthetase-like 17 544 - -
Csa02g00587 547 Pfam AMP-binding enzyme 36 448 IPR000873 -
Csa02g00587 547 Pfam AMP-binding enzyme C-terminal domain 457 532 IPR025110 -
Csa02g00587 547 Gene3D - 443 545 IPR045851 -
Csa02g00587 547 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 8 543 - -
Csa02g00587 547 CDD 4CL 23 538 - -
Csa02g00587 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 543 - -
Csa02g00587 547 Gene3D - 4 442 IPR042099 -
Csa02g00587 547 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02142 Csa02g00587 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00587 Csa-Chr2:4235452 Csa07g02072 Csa-Chr7:20015822 0 dispersed
Csa02g00886 Csa-Chr2:8265069 Csa02g00587 Csa-Chr2:4235452 2.92E-15 transposed
Csa02g02790 Csa-Chr2:24252651 Csa02g00587 Csa-Chr2:4235452 0 transposed
Csa05g02201 Csa-Chr5:24830798 Csa02g00587 Csa-Chr2:4235452 3.19E-135 transposed
Csa01g02142 Csa-Chr1:18604088 Csa02g00587 Csa-Chr2:4235452 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00587 K01904 - csv:101210868 1071.61