Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00595 ATGGATAGCCCTTTGACGCGTAGCTCTACCCCTAATTCCTCACCTATCTCAAATCCTGGTTCACATGATGAAAACCCACGCGTTAAGTTCCTGTGCAGCTTCTTGGGAAGTATAATGCCTCGCCCCCAAGATGGCAAGCTTCGGTATGTTGGGGGAGAGACAAGGATTGTGAGTGTTCCGAGGGATATTACCTATGAAGAGTTGATGGTTAAGATGAGGGAACTTTATGATGGGGCTGCAGTGTTGAAATACCAGCAACCAGATGAGGATCCTGATGCTCTTGTGTCAGTTGTCAATGATGACGACGTGATTAACATGATGGAAGAGTATGATAAGGTGGGTTCTGGTGATGGGTTCACTAGGCTCAGGATATTTTTGTTTTCGCATCCTGAACAAGATGCTTCTTTGCCTTTTGTGGATGGGGATGAGAGGGATACTGAGAGGCGATATGTAGATGCTCTTAATAATTCAAATGACATGAATGATTTTGTTAGACAACAACAACAAAATTCCCCTGCACTTAGTGGCATAGATGATATGCACGGGACTGAACATTTTTTGAATCCAATGAATATTGAAGGTAGTCTTCACACTCAGAGGAGTTGTGAGCCCTTGTCACAATACCACCTGCATCAGCTCACAATCCCTCATGTTGGGTCTGGGGGGCAACAACAATCTGTGGCTCAAAGGTATAGTGAAATGGAAGCTCCATGGAGTCCTGCTTTACTTTCACCTAGGCATCACGGTCCATATGATTCAAGACCAATGGGAGACTATCCATCTTCTCCATTTGCACGGTACCGTATGCCATTCCCCGATTTGCCAGATAAATATTTGGAAAGAATGCCTGAAGACTATGTCAGGCAACAAATGAATCACCAACATATGTATGAACATCAACCACAGTATAATGAGAATATTGTATGGCTGCCAAATGGAACAATTAATGAAGAATCGGGTTTCCCAGGTAATATATTACATGGACATGGTGTTCCAGATGGGAATAGTTCTTGTGAACACTGTCGAGCAAATTTTCATCGGTATCAAGCACACATGGAGCAAGTTAATACCTTAAATGGGCTTCCCCTTGAATACACTCAGAATAGGGAGGCCTTGATGCAGAAGGCAGACACAAAGTTCCATCATGGTATTTTTCCAAACGAGCAGAATATTAATGATCATCGATCTGCTTATAATGAGACACCACCCCATGAGAAAGGATGGATTATGCAACACCAAATGAGTGTGCGAGGGGATGACACGAGAACACATGTTTCTGGGACTGGGCGATTAACTGATCACTACATTGTGGATGGTTCTGGCTCAAATTTGCCTTCTACACAAAGTAATGTTGCTGATGGCTACCATGCTTCAACAAATTTTCATGATGAGGTATTTCGTGATCAGGTTGTGCCTAGTGGGCAACATATGTGTGTTCCTCCTCCTGAAGATCGTGGTGTTGGTTATATGCCTTATGGATATGGAGGAGAACCTCATTATCCTCCAATGGCACAAAGGCATATGCCCGGAAACGCCTCTTGGCGAAATGTTCAGAATCCATTGCATGTTGCTCCCCCATATGAAGCATCTGTTTTCCATCAACAAGGGAATGCAAGTATAAATCCAGGATATATCAAAGCCATGCAAGATGGTAGTCCACGAATTCATATGGGTGTGGACCACCAAAATCCATGGCATGAATCCTCACAAAAAGTTTTGGGTGTTGATGGAGCAACTGGTACAGAGCATTTACCTGCACATGTTTTGAAGACTAACTCGACCACAGTTGGCCATGACAATCAACAATTCACAAGTTTAGAACACATCCAACCACATCTTGATAAAATAAACCTTGTTGCTTCTCCTATGCAGAGGTCAGATTCATCTTCAGCATTCATTCAAGAAAAAATGGTTGCACCTTTTCATCCTAGCCAAAATCCACAACTAAGGGCTGTTAGTGCGGTTAATGAAGCTATGATGATGGAAAGGAAAGTTGTGCATGGGGAAGGAAATGGTCACATGATAAAGGATATGGGGAAACCTGACATCTCTGAAGCACACACTGCGTCTCATCCAGGGCAGAATAACACTGATGATACATATTCCAAGGTTGCACCCCTTGAATTGTTAAATTCAACTTGCACAAACTCTGCAGTAGAAAATGGTGATGGCTTGAAACCTTCTGTAGAGACTCTAGAAAAACCTAAACTATCTGTCAGCCGTCTGAGTTTCTTACCTGAGTTGATTGCTTCTGTGAAAAGAGCAGCACTAGAAGTATCTGAAGAGACAATGGTTGAAGAAACTGCTCTAAGGAGACCAGATTCAATAGAGAAAAAAGAGACAACAAATGAGCAACACTCCTCGAATAACCATGTGGAACCTGAGTTGGAAACGGAGAGTGAAAATCAAAGCTCCAGAATTGAGCCAACAAAAGCTGAAGAGGAAGCCATTTCAAGAGGATTACAAACAATTAAAAATGATGATCTGGAGGAGATTCGTGAACTAGGGTCTGGGACTTATGGTGCTGTTTATCATGGGAAGTGGAGAGGTTCTGATGTTGCAATAAAGAGAATCAAAGCTAGTTGTTTTGCTGGACGGCCTTCGGAAAGAGAACGTTTGATTGCTGATTTTTGGAAGGAAGCTTTGATATTAAGTTCTTTACACCATCCAAATGTTGTTTCCTTCTACGGCATTGTCCGTGATGGTCCTGATGGTTCCTTAGCTACAGTGACAGAATTCATGGTTAATGGATCATTGAAGCAGTTTTTGCACAAAAAGGACAGGACCATTGATCGTCGTAAGAGGCTCATTATAGCTATGGATGCTGCATTTGGGATGGAATATTTACATGGGAAGAATATTGTACATTTTGATTTGAAATGTGAAAACCTTTTGGTGAATATGAGAGACCCTCAGAGGCCTGTTTGCAAGATTGGTGATTTGGGATTGTCAAAGGTGAGACAACACACGTTAGTATCGGGAGGGGTTCGTGGAACTTTGCCTTGGATGGCGCCAGAGCTTCTTAGTGGGAAAAGTAACATGGTGACAGAGAAGATTGATGTTTACTCATTTGGAATTGTTATGTGGGAACTACTCACAGGAGATGAACCATATTCAGATATGCATTGTGCTTCAATAATCGGAGGAATTGTGAACAATTGTTTACGCCCTGAAATTCCGACATGGTGCGACCCAGAATGGAAGGCTTTAATGTCAAGCTGTTGGGACTCGGATCCAGCTAAGAGACCATCATTTTCAGAAATTTCTCAGAAGCTAAGGAATATGGCAGCTGCAATGAATGTGAAATAG 3309 42.4 MDSPLTRSSTPNSSPISNPGSHDENPRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVPRDITYEELMVKMRELYDGAAVLKYQQPDEDPDALVSVVNDDDVINMMEEYDKVGSGDGFTRLRIFLFSHPEQDASLPFVDGDERDTERRYVDALNNSNDMNDFVRQQQQNSPALSGIDDMHGTEHFLNPMNIEGSLHTQRSCEPLSQYHLHQLTIPHVGSGGQQQSVAQRYSEMEAPWSPALLSPRHHGPYDSRPMGDYPSSPFARYRMPFPDLPDKYLERMPEDYVRQQMNHQHMYEHQPQYNENIVWLPNGTINEESGFPGNILHGHGVPDGNSSCEHCRANFHRYQAHMEQVNTLNGLPLEYTQNREALMQKADTKFHHGIFPNEQNINDHRSAYNETPPHEKGWIMQHQMSVRGDDTRTHVSGTGRLTDHYIVDGSGSNLPSTQSNVADGYHASTNFHDEVFRDQVVPSGQHMCVPPPEDRGVGYMPYGYGGEPHYPPMAQRHMPGNASWRNVQNPLHVAPPYEASVFHQQGNASINPGYIKAMQDGSPRIHMGVDHQNPWHESSQKVLGVDGATGTEHLPAHVLKTNSTTVGHDNQQFTSLEHIQPHLDKINLVASPMQRSDSSSAFIQEKMVAPFHPSQNPQLRAVSAVNEAMMMERKVVHGEGNGHMIKDMGKPDISEAHTASHPGQNNTDDTYSKVAPLELLNSTCTNSAVENGDGLKPSVETLEKPKLSVSRLSFLPELIASVKRAALEVSEETMVEETALRRPDSIEKKETTNEQHSSNNHVEPELETESENQSSRIEPTKAEEEAISRGLQTIKNDDLEEIRELGSGTYGAVYHGKWRGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKIDVYSFGIVMWELLTGDEPYSDMHCASIIGGIVNNCLRPEIPTWCDPEWKALMSSCWDSDPAKRPSFSEISQKLRNMAAAMNVK* 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4303471 4313840 + CsaV3_2G008020.1 Csa02g00595 518652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00595 1102 MobiDBLite consensus disorder prediction 1 25 - -
Csa02g00595 1102 Pfam Protein tyrosine and serine/threonine kinase 830 1092 IPR001245 GO:0004672|GO:0006468
Csa02g00595 1102 Gene3D Transferase(Phosphotransferase) domain 1 916 1102 - -
Csa02g00595 1102 MobiDBLite consensus disorder prediction 765 822 - -
Csa02g00595 1102 PRINTS Tyrosine kinase catalytic domain signature 911 924 IPR001245 GO:0004672|GO:0006468
Csa02g00595 1102 PRINTS Tyrosine kinase catalytic domain signature 948 966 IPR001245 GO:0004672|GO:0006468
Csa02g00595 1102 PRINTS Tyrosine kinase catalytic domain signature 1019 1041 IPR001245 GO:0004672|GO:0006468
Csa02g00595 1102 PRINTS Tyrosine kinase catalytic domain signature 1063 1085 IPR001245 GO:0004672|GO:0006468
Csa02g00595 1102 SMART serkin_6 829 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00595 1102 Pfam PB1 domain 43 127 IPR000270 GO:0005515
Csa02g00595 1102 MobiDBLite consensus disorder prediction 1 21 - -
Csa02g00595 1102 SMART PB1_new 42 127 IPR000270 GO:0005515
Csa02g00595 1102 CDD PB1_UP2 31 127 - -
Csa02g00595 1102 PANTHER SERINE-THREONINE PROTEIN KINASE 18 1102 - -
Csa02g00595 1102 SUPERFAMILY Protein kinase-like (PK-like) 816 1090 IPR011009 -
Csa02g00595 1102 Gene3D Phosphorylase Kinase; domain 1 815 915 - -
Csa02g00595 1102 ProSiteProfiles Protein kinase domain profile. 829 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00595 1102 Gene3D - 46 129 - -
Csa02g00595 1102 CDD STKc_MAP3K-like 835 1092 - -
Csa02g00595 1102 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 18 1102 - -
Csa02g00595 1102 SUPERFAMILY CAD & PB1 domains 44 133 - -
Csa02g00595 1102 ProSitePatterns Serine/Threonine protein kinases active-site signature. 954 966 IPR008271 GO:0004672|GO:0006468
Csa02g00595 1102 ProSitePatterns Protein kinases ATP-binding region signature. 835 856 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00595 Csa-Chr2:4303471 Csa03g01125 Csa-Chr3:8860576 9.19E-29 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77880 PF07714 PK_Tyr_Ser-Thr 9.30E-62 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00595 - - csv:101215475 2243.39