Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00615 ATGCACTCCTTCGCCGCCCCCTGGTCCGGCGTTCCCGCCTCTACCAAACCCCTCTGCTGTTCCTGCAAGTCTGCCACCGCTGCTCTCTTCTGCCGACACGACACTGCCTTCCTCTGTCTCCGCTGTGATGCCCAAATCCACACTCTCTCCGGCACGCGCCACCCACGTGTCTGGCTTTGCGAGGTCTGTGAGCAAGCTCCCGCCACCATCACCTGCAACGCCGACGCCGCCGCTCTCTGCCCTTCCTGCGATGCTGACATCCACTCTGTTAATCCCCTCGCTCGTCGTCATGACCGCTCCGCTATTCAACCCTTCTACGATTCGCCTCCCTCTTCCTCTGTCGCTTCTGTCTTCAAATTCCTTATCCCGACTCAACACCAACACGACGCCGTTCAACCAGATTTGAAATCGGAGGACATTTTCTTCTCCGATATGGATTCGTTGATTGATTTCGATTACCCGACTGCTGGTGATGGTGTTGTTCCTGAACAATCCAATCCAGGAACAGAGTCCACTACACAACTCACCGATTCCTCTACTAGAAATTTCTCCGGGTTCCAGCTCTGTAGCACTCGATCTAAACTCGATGCCATTAGCTACCCATCTCAGAACCTTAGCCATAGTGTTTCTTCATCTTCTTTAGACGTAGGAGTTGTGCCGGATCGGAACACGGCCTCCGACGCGTCGTTTCCGACGGTGGAGAAGGCGGTTCAATTGCGGGGGATGGAGCGGGAGGCGAGGGTGTTGAGGTACAGAGAGAAGAAGAAGAATCGGAAATTTGAGAAGACGATTCGGTATGCTTCGAGGAAAGCTTATGCTGAAATTCGGCCGAGGGTTAAAGGGAGGTTCGTTAAACGGAATGAAACAAACTGTGAAATGGAGAGAATCTACGGCAGCGCCGGCGTAGGGTTCATGGTAGGCGAGGGGCAATACGGCGTTGTTCCGAGCCTTAGAGTTTGA 960 53.85 MHSFAAPWSGVPASTKPLCCSCKSATAALFCRHDTAFLCLRCDAQIHTLSGTRHPRVWLCEVCEQAPATITCNADAAALCPSCDADIHSVNPLARRHDRSAIQPFYDSPPSSSVASVFKFLIPTQHQHDAVQPDLKSEDIFFSDMDSLIDFDYPTAGDGVVPEQSNPGTESTTQLTDSSTRNFSGFQLCSTRSKLDAISYPSQNLSHSVSSSSLDVGVVPDRNTASDASFPTVEKAVQLRGMEREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRVKGRFVKRNETNCEMERIYGSAGVGFMVGEGQYGVVPSLRV* 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4503501 4505228 + CsaV3_2G008220.1 Csa02g00615 518672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00615 319 CDD Bbox1_BBX-like 59 102 - -
Csa02g00615 319 CDD Bbox1_BBX-like 18 59 - -
Csa02g00615 319 ProSiteProfiles CCT domain profile. 244 286 IPR010402 GO:0005515
Csa02g00615 319 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 16 316 IPR045281 GO:0009909
Csa02g00615 319 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 16 316 - -
Csa02g00615 319 SMART bboxneu5 55 102 IPR000315 GO:0008270
Csa02g00615 319 SMART bboxneu5 14 49 IPR000315 GO:0008270
Csa02g00615 319 Pfam B-box zinc finger 57 100 IPR000315 GO:0008270
Csa02g00615 319 Pfam CCT motif 244 286 IPR010402 GO:0005515
Csa02g00615 319 ProSiteProfiles Zinc finger B-box type profile. 14 59 IPR000315 GO:0008270
Csa02g00615 319 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02115 Csa02g00615 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00615 Csa-Chr2:4503501 Csa02g02445 Csa-Chr2:21557067 6.05E-76 dispersed
Csa01g02115 Csa-Chr1:18437986 Csa02g00615 Csa-Chr2:4503501 1.36E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30878 PF00643 zf-B_box 1.60E-06 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00615 - - csv:101217538 634.024