Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00638 ATGGCTGCTGATTCTTCCTGTGATGGTGCTATTTTCGACTCGCCAAAATGTAGTAAGTTGACTATGCAAGAGAAGAGAGAACTTGTACATGAAATTTCAAAGTCAAATGTTGCAAGTGAGACACTGCAGTCATGGAGCCGTCAAGATATTCTACAGGTCCTGTGTGCAGAGATGGGGAAAGAAAGAAAATATACAGGCTTGACGAAGCAGAAAATAATTGGGCATCTTTTGAGACTTGTATCCGAAAAGAAGTCTTCCGTGTCCGAGGTTTTGAAAAATCTTGAGCCACAGTCTCCTTCAGGTGGTCATAAAATTACCAAAAGGCAGAGGAAATCTGAGCATGTAGCTCAACTTTCTGTTCCTGCAACGGACTTTCCAACCAGCAGTTCTCATAATGATTTGGTTAGTACAGCTTGCTGCAAAAACTTGGCTTGTCGAGCGACTCTAAATCCAGGAGATGCATTTTGTAGAAGGTGTTCATGCTGCATCTGTCGTCAGTATGATGATAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGCAGAGCCTCCATTTCAAGGTGACTCATGCAACATGTCATGTCATCTTGAATGTGCTTTGAAAGATGTAAGATCGGGAATTTTGAAAGCTGGACGAAGCAAGGGAATTGATGGGAGCTTCTACTGTGTGTCTTGTGGGAAATTAAATGATTTGCTTGGGTGCTGTAGAAAACAACTTATTCATGCAAAAGATACAAGAAGGGTCGACATACTGTGCTATCGTGTCTCTCTGAGCCAAAAGCTTCTCCATGGAACTGAAAAGTGTAAAGTGCTTTATCAGATTGTTGATGAGTCTGTGAGGAAGCTTGAAGAGGAAGTGGGACCAATAGCCGGTGTACCAGTAAAGATGGGTAGAGGTATTGTTAACAGGCTTTCATCCGGCCCTGAAGTTCAAAAACTCTGTGCTTCTGCTATTGAGTTATTGGACTCGATGGTCTCCAGCCAATCCTTGCATCTTTCACCTAATCCTGACGTTCAAGATGCAAATTTTGTTCCAGCAAACATGATTAGATTTGAAGATGTTAAGTCAACATCCCTCACTCTAGTTTTGAGTTACGAAAATGGATCCTCTGAGAACCAGATCGGGTTCACCTTATGGCATCGTAAGGCAGATGATGCAGATTACCCGGCAGAACCAACATGTATTCTACGACAACCGAAGGCGAGGTGTCTTGTGATGGGACTATCACCTGCTACCAAATATCATTTCAAAATTGTTCAGTTTGAGGGGACAAGGGAGTTGAGGGAATTTGAAGTTCAGTTCTCAACAATTGGGGAGGTAGAAGAGAACCCAGGCTGTTTAGAAATTGAGAGAAGCCAAAGTCATGCAACCAACTGTAGCGACCTTTCTAATCCTTCTTCAGTTGAAGACGAAACTACTGACATTCTTCCCTATGGTGATCGGACCAATAACCTAGGAAAAAATTCCCCTGCCTATTCAAAGGGCATCGAAATACTTTCCTCGGCTATATTATCCACTGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGAATGCCTGCAGGAACAGTTTCTGCTCTGAATGAGGCAACTGCTGCAGGAATGGTTGGTTTGATTCCCAACTCTGCTGGATCTAAGCTCGAGAACAGGCATGGACCAGCTGCCCCAAAACTCAACACTGATAATCAGTTAAGTACCCTTGTTCGGTCTGGAATGGATGGCCAGCAATTTGTTAGCTGTTCTCAAGATGGTTTGCCTATTACTCCCTGCAAGCTTGAAGTGCTAAAGGATAGTCTTGGTAGGGGTGAGAGACCAAAATCCAGCTGCAAGGACCAGGAAAATAGGACTCGAAAAGGAGGGGAACCCCAAGATGGTGGCACATCAAAGATGAGAACTGGGGAAAGACAGGATGACAAATGTGCTGAAAACGGTGTTTCAGATCGGGATTTCGAGCATTATGTGAAGGTAATTAGATGGTTGGAGTGCAAGGGTTATATCGAAAAAAATTTCAGGCAGAAATTTCTCACTTGGTACAGCTTGAGAGCATCCCAACAAGAAGTTAAGATTGTGAAGGTGTTTGTTGATACCTTTATTGAAGATCCAGCGTCTCTTGCAGAACAACTTGTAGATACATTTTCAGAATGCATTTCAAGCAAAAAACCGACGACTACACCGCCCGGGTTCTGCATGAAGCTGTGGCACTGA 2205 43.36 MAADSSCDGAIFDSPKCSKLTMQEKRELVHEISKSNVASETLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIGHLLRLVSEKKSSVSEVLKNLEPQSPSGGHKITKRQRKSEHVAQLSVPATDFPTSSSHNDLVSTACCKNLACRATLNPGDAFCRRCSCCICRQYDDNKDPSLWISCSAEPPFQGDSCNMSCHLECALKDVRSGILKAGRSKGIDGSFYCVSCGKLNDLLGCCRKQLIHAKDTRRVDILCYRVSLSQKLLHGTEKCKVLYQIVDESVRKLEEEVGPIAGVPVKMGRGIVNRLSSGPEVQKLCASAIELLDSMVSSQSLHLSPNPDVQDANFVPANMIRFEDVKSTSLTLVLSYENGSSENQIGFTLWHRKADDADYPAEPTCILRQPKARCLVMGLSPATKYHFKIVQFEGTRELREFEVQFSTIGEVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPYGDRTNNLGKNSPAYSKGIEILSSAILSTDAFNLSDNGEEGMPAGTVSALNEATAAGMVGLIPNSAGSKLENRHGPAAPKLNTDNQLSTLVRSGMDGQQFVSCSQDGLPITPCKLEVLKDSLGRGERPKSSCKDQENRTRKGGEPQDGGTSKMRTGERQDDKCAENGVSDRDFEHYVKVIRWLECKGYIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIEDPASLAEQLVDTFSECISSKKPTTTPPGFCMKLWH* 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4736173 4740782 + CsaV3_2G008450.1 Csa02g00638 518695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00638 734 MobiDBLite consensus disorder prediction 93 112 - -
Csa02g00638 734 Pfam PHD - plant homeodomain finger protein 140 259 IPR032881 -
Csa02g00638 734 MobiDBLite consensus disorder prediction 599 642 - -
Csa02g00638 734 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 734 - -
Csa02g00638 734 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 734 IPR044514 GO:0010048|GO:0040029
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02159 Csa02g00638 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00143 Csa-Chr2:1000331 Csa02g00638 Csa-Chr2:4736173 3.17E-22 dispersed
Csa02g00638 Csa-Chr2:4736173 Csa02g02200 Csa-Chr2:19811478 1.41E-12 dispersed
Csa01g02159 Csa-Chr1:18737982 Csa02g00638 Csa-Chr2:4736173 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00638 - - csv:101222501 1474.91