Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00655 ATGAGTGAGGAGGCAACCGAGAAGATGAATAAGAAAGTAATAAAAGAAAACAAAAAAATGGAAAGAAGCCATTTTGATGTGTTGGGAATTTGCTGTTCTTCAGAAATCCCTTTGATTGAAAACATCCTCAAACCCCTCCAAGGAATCAAACAAATCACTGTCATTGTCCCTACAAGAACACTCATTGTTGTTCATGATTCGCTTCTCATTTCCCAACTTCAAATTGTGAAAGCTCTAAATGAAGCAAGATTGGAGGCAAATATACAATTAAAAGGAAAGGGAATTATGAAGAAGAAATGGCCAAGTCCTTATGCAATAGCCAGTGGGTTGCTTCTAACTGCGTCGTTTTTGAAGTATGTCTACCACCCATTGCGGTGGCTTGCCGTTGCAGCCGTTGCCGCCGGCATCTTTCCCATTCTTCTAAAAGCCATTTCTGCCATTCGCCACCTCAGAGTTGATGTCAACATTCTTGCTATTATTGCAGTTGTGGGGACAATTGCAATGGATGATTATATGGAAGCTGGGAGTATAGTGTTTTTGTTTTCCATTGCCGAATGGCTTGAGTCAAGAGCAAGCCACAAGGCGAATGGTGCAATGTGTTCACTAATGAGGTTAGCTCCCCAGAAAGCCACAATAGCTGAAAGTGGAGAGGTTGTGGATGTAAGAGATGTGAAATTGAAGAGTGTGTTAGGTGTGAAAGCTGGAGAAGTTATTCCGATTGATGGGATTGTTGTTGAAGGCAATTGTGAAGTTGATGAGAAAACTTTGAGTGGAGAAACTTTCCCTGTTACCAAACAAAAAGATTCTCTTGTTTGGGCTGGTACCATCAACTTAAATGGTTACATAAGTGTTCAAACAACAGTTGTAGCTGAGGATTGTGTGGTAGCAAAAATGGCTGAGCTTGTAGAAGAAGCTCAAAATAACAAATCAAAAACTCAAACATTCATTGATGAATGTGCCAAATATTACACCCCAGCTGTTGTTATCATCTCAGCTTGTCTAGCAGCCATTCCAGCTGCATTGCGAGTTCATAATCTCAGGCATTGGCTTCACTTAGCTTTGGTGGTTTTAGTGAGTGCATGTCCTTGTGCCTTAATCCTCTCCACCCCGGTCGCCGCATTTTGTGCTCTTACGAAGGCAGCCATGGCCGGAGTTTTGATCAAAGGCGGCAACCACCTTGAAGTTCTTGCAAAGATTAAGGTTATGGCCTTTGATAAAACTGGCACGATCACTAGAGGTGAATTTGTTGTAACACATTTTCAAGCTCTAAGAGATGATATTAACTTCCACACCTTGCTCCAATGGGTTTCAAGCATTGAGAGCAAATCAAGCCATCCAATGGCAACTGCCCTTGTCAACTACGGAAAGCTGCATTCTATCGATCTTAAGCCGGAAAACGTAGAGGAATTTGAAAATTTTCTAGGAGAAGGTGTTCGTGGGAAGATAGATGGTAATGATATTTACATTGGAAGCAAAAAAATTGCTGCCAGAGCTGGCTACGACATACCAGTTTCTTCAAAATTGAACAACTTTGACGATGAAACGAGACAAGAGCAAACCCTTGGATATGTATTTTGTGGGGGGATGATGATTGGATCTTTCGGTTTATTGGATTCGTGTCGTTCCGGAGTTAAAGAGGCAATCGAGGAGATCAAAAGTTTTGGAATTAAAACTGCTATGCTCACAGGAGATTGTAGGGCAGCTGCCATGCATGTCCAAGAACAGCTCGGGAATACGCTTGACGTAATCCATTCAGAACTTCTACCAAAGGAGAAGGCAAATATCATAAAAGAATTTAAAAATAATGATGGAGCAATTGCCATGGTTGGAGATGGCTTAAATGATACCCCAGCATTAGCTACCGCTGATATTGGCATGTCAATGGGTATTTCAGGTTCAGCATTGGCCACTGAAACTGGGAATGTGATTTTAATGTCAAATGACATGAGAAAGATTCCAAAAGCCATCAAACTAGCAAAGACATTCCACACAAAAGTAGTTCAAAATGTCATTTTGTCAATCGGTACAAAGACTGCCATCCTAGGCTTGGCATTTGCTGGACATCCCCTCATTTGGGCAGCCGTTCTTGCTGATGTCGGTACTTGTCTATTGGTCATCTTGAACAGCATGCTCCTTTTGAGAGGAATGGATCACAAACATGGAAAGAAAAAATGTTGCAAATCTTCCAAACCATGCTTAACGAAACATGGACAACTGTGCGATGGTGCTAGATCTTCTCATCATCACAGCCATCATCATGATCATGATCATGATCATGATCACCATAATCATCGATGCCATGTCGTCGATGATCAATCAGCTAGTCAAGAGAATAATCATGTCCATAAGCATTGTTGTTGTGAGGAAAAGGATCACAAGATGCAACTTTCACAAGATCACAATAAAGAAACATGTGGAGTACTGAACCAAGAGAAGAATAATCATGAATGTGGAGAGCATGAGTGTGAGGAAACTAATGTGCATCATAAAAAAGAAGATAAATTTCATCATAACTATTCAAATCAATGTGAGAAAACCCCACTTGAGAGAGAGATTAGGGGAAATTCTTCAAAGAGAGTGGGTAAATCAGATTGTAATTGCCACTCACATCATGTTACAATTGACATTCATGAAAGTAATGAGTGTGAGAGAGTAGATCATAATTAG 2667 40.68 MSEEATEKMNKKVIKENKKMERSHFDVLGICCSSEIPLIENILKPLQGIKQITVIVPTRTLIVVHDSLLISQLQIVKALNEARLEANIQLKGKGIMKKKWPSPYAIASGLLLTASFLKYVYHPLRWLAVAAVAAGIFPILLKAISAIRHLRVDVNILAIIAVVGTIAMDDYMEAGSIVFLFSIAEWLESRASHKANGAMCSLMRLAPQKATIAESGEVVDVRDVKLKSVLGVKAGEVIPIDGIVVEGNCEVDEKTLSGETFPVTKQKDSLVWAGTINLNGYISVQTTVVAEDCVVAKMAELVEEAQNNKSKTQTFIDECAKYYTPAVVIISACLAAIPAALRVHNLRHWLHLALVVLVSACPCALILSTPVAAFCALTKAAMAGVLIKGGNHLEVLAKIKVMAFDKTGTITRGEFVVTHFQALRDDINFHTLLQWVSSIESKSSHPMATALVNYGKLHSIDLKPENVEEFENFLGEGVRGKIDGNDIYIGSKKIAARAGYDIPVSSKLNNFDDETRQEQTLGYVFCGGMMIGSFGLLDSCRSGVKEAIEEIKSFGIKTAMLTGDCRAAAMHVQEQLGNTLDVIHSELLPKEKANIIKEFKNNDGAIAMVGDGLNDTPALATADIGMSMGISGSALATETGNVILMSNDMRKIPKAIKLAKTFHTKVVQNVILSIGTKTAILGLAFAGHPLIWAAVLADVGTCLLVILNSMLLLRGMDHKHGKKKCCKSSKPCLTKHGQLCDGARSSHHHSHHHDHDHDHDHHNHRCHVVDDQSASQENNHVHKHCCCEEKDHKMQLSQDHNKETCGVLNQEKNNHECGEHECEETNVHHKKEDKFHHNYSNQCEKTPLEREIRGNSSKRVGKSDCNCHSHHVTIDIHESNECERVDHN* 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4969020 4975670 + CsaV3_2G008620.1 Csa02g00655 518712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00655 888 ProSitePatterns E1-E2 ATPases phosphorylation site. 405 411 IPR018303 -
Csa02g00655 888 Gene3D - 395 660 IPR023214 -
Csa02g00655 888 PRINTS P-type cation-transporting ATPase superfamily signature 252 266 - -
Csa02g00655 888 PRINTS P-type cation-transporting ATPase superfamily signature 403 417 - -
Csa02g00655 888 PRINTS P-type cation-transporting ATPase superfamily signature 532 543 - -
Csa02g00655 888 PRINTS P-type cation-transporting ATPase superfamily signature 554 564 - -
Csa02g00655 888 PRINTS P-type cation-transporting ATPase superfamily signature 609 628 - -
Csa02g00655 888 PRINTS P-type cation-transporting ATPase superfamily signature 633 645 - -
Csa02g00655 888 Gene3D - 192 306 - -
Csa02g00655 888 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 177 687 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g00655 888 ProSiteProfiles Heavy-metal-associated domain profile. 22 88 IPR006121 GO:0046872
Csa02g00655 888 Gene3D - 414 540 IPR023299 GO:0000166
Csa02g00655 888 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 15 733 - -
Csa02g00655 888 MobiDBLite consensus disorder prediction 743 764 - -
Csa02g00655 888 Pfam E1-E2 ATPase 206 381 - -
Csa02g00655 888 SUPERFAMILY Calcium ATPase, transmembrane domain M 155 397 IPR023298 -
Csa02g00655 888 Gene3D - 16 89 - -
Csa02g00655 888 SUPERFAMILY Calcium ATPase, transduction domain A 217 302 IPR008250 -
Csa02g00655 888 SFLD p-type atpase 385 660 IPR044492 -
Csa02g00655 888 SUPERFAMILY HAD-like 402 710 IPR036412 -
Csa02g00655 888 SFLD C1.7: P-type atpase like 385 660 - -
Csa02g00655 888 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 15 733 - -
Csa02g00655 888 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 154 498 - -
Csa02g00655 888 SUPERFAMILY HMA, heavy metal-associated domain 18 86 IPR036163 GO:0046872
Csa02g00655 888 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 154 712 IPR027256 GO:0006812|GO:0016021|GO:0019829
Csa02g00655 888 Pfam haloacid dehalogenase-like hydrolase 399 623 - -
Csa02g00655 888 CDD P-type_ATPase_HM 105 711 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00655 Csa-Chr2:4969020 Csa06g03896 Csa-Chr6:30800528 1.78E-75 dispersed
Csa02g01427 Csa-Chr2:13698624 Csa02g00655 Csa-Chr2:4969020 8.40E-76 transposed
Csa01g02172 Csa-Chr1:18849770 Csa02g00655 Csa-Chr2:4969020 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00655 K01534 - csv:101203668 1680.61