Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00670 ATGGAGAACATTCTGGATGAGTATGGCTATTACTGGGAAACCAATATGTTTCTCCAAACCGAAGATTTGGACAGTTGGGGATTAGATGAAGCATTTTATGGTTCTTATGATTCGAGCTCACCGGACGGAACGTTGTCATTGTCAGAGGCGTCGAAGAATATCTTATCGGAGAGGAATCGGAGGAAGAAGCTTAATGATAGGCTTCTTGCTCTCAGAGCCGTCGTCCCTAATATCACCAAAATGGATAAGGCGTCAATAATAAAAGATGCGATCGGGTACATCCAAGAACTCCGTGCAGAAGAAAATCAAATCGAAACAGAGATTTCAAATCTAGAATCAAACGTATCCAAGAGCACAACATCAAGTGAAGACGACGATCATGGAAACAACAATGGAAATACAAGAAAGAGGGGAACAAATAATTGTAATCGACAAATACGAGAGAAGCCATCGTCTTTCCCGATCGAAATTCTCGACTTGAACGTGAATTACATGGGAGAGAAGACGATGGTGGTGAGTATGACGTGTCAAAGAAGAAACAACGCCGTATTCAAAATTTGTCAAGTGATTGAATCTTTGAAGCTGAAGATTATTATGGCCAATATTACCGTCGTTGCCAATAGGCTTCTCAGTACGCTCTTCCTTGAGGCAGAGAGAGCAGAAGAAGAGGAACTAAAGGTAAAAATAGAAAAAGCAATTGCAGCCATTAGTGATCAACAAAATCCTATGAGCATTTGA 738 40.79 MENILDEYGYYWETNMFLQTEDLDSWGLDEAFYGSYDSSSPDGTLSLSEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIGYIQELRAEENQIETEISNLESNVSKSTTSSEDDDHGNNNGNTRKRGTNNCNRQIREKPSSFPIEILDLNVNYMGEKTMVVSMTCQRRNNAVFKICQVIESLKLKIIMANITVVANRLLSTLFLEAERAEEEELKVKIEKAIAAISDQQNPMSI* 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5179234 5186154 + CsaV3_2G008770.1 Csa02g00670 518727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00670 245 Pfam Helix-loop-helix DNA-binding domain 55 97 IPR011598 GO:0046983
Csa02g00670 245 Coils Coil 47 67 - -
Csa02g00670 245 PANTHER TRANSCRIPTION FACTOR BHLH35 1 239 - -
Csa02g00670 245 MobiDBLite consensus disorder prediction 108 143 - -
Csa02g00670 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 114 IPR036638 GO:0046983
Csa02g00670 245 Coils Coil 94 114 - -
Csa02g00670 245 Gene3D - 48 114 IPR036638 GO:0046983
Csa02g00670 245 SMART finulus 54 103 IPR011598 GO:0046983
Csa02g00670 245 Coils Coil 215 235 - -
Csa02g00670 245 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 239 - -
Csa02g00670 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00670 Csa-Chr2:5179234 Csa05g02335 Csa-Chr5:25725825 1.59E-16 dispersed
Csa06g03087 Csa-Chr6:26485325 Csa02g00670 Csa-Chr2:5179234 4.73E-15 dispersed
Csa02g00889 Csa-Chr2:8296805 Csa02g00670 Csa-Chr2:5179234 2.05E-10 transposed
Csa06g01239 Csa-Chr6:10430376 Csa02g00670 Csa-Chr2:5179234 7.37E-21 transposed
Csa01g02184 Csa-Chr1:18957508 Csa02g00670 Csa-Chr2:5179234 3.24E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30882 PF00010 HLH 6.00E-10 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00670 - - csv:101203107 435.261