Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g00680 | ATGAGTTTATTCAAGGGCCCTCCTCAGTCTCCTTACGGTAGACGGACTGATGTCGAGTCCGGTAGCAGCAATTCCGGCGATGTCGACGACGATGATTCTTCTAATCCATTTGAAATTCGCACCACTAAACATGCTTCTGTTGACAGACTCCGCCGCTGGAGACAAGCTGCCCTTGTGTTAAATGCTTCTCGACGATTTCGGTATACTTTAGACTTAAAAAAGGAAGAAGAGAAGAAAGAAGCTTTGAGAAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATATCTCTTTAAAGAGGCTGGGGATCGTTTAACAGGACCAGGGCCTACAACAGCAGAAGCTCCAAATGGTGATTTTTCTGTTGGACCAGAGCAACTGGCTGTGTTGGTAAAGGATCGTAATGTTGAAGCTCTGGAGCAGCATGGAGGGGTTAAAGGGATAGCAGATATGTTGCAATCGAATTTAGAGAAGGGGATAGTTGGTGATGATTCTGATTTATTAAATCGGAAAAACAAGTATGGTTCAAACACATATCCCCAGAAACCGGGAAGGAGTTTTTGGAGGTTTCTCTGGGAAGCTTGGCAAGATCTTACATTAATCATATTGATGATAGCTGCTGTTGCTTCGTTGGTGCTAGGCATAAAAACTGAGGGAATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCAGTTATTCTCGTCATTGTTGTAACAGCTATTAGTGACTATCGACAATCTCTTCAATTCCAGAACTTGAATAAGGAGAAGAGGAACATACAAGTGGAGGTTGTTAGAGGTGGCCGTCGAATTGAGGTCTCAATTTATGACATTGTTGTTGGCGATGTCATACCGCTCAATATTGGTGATCAGGTCCCTGCTGATGGCATCTTAATTTCTGGGCACTCACTTGCTATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTTCAAAAGCATGGTAAGGAACCATTCTTGATGTCTGGATGCAAAGTAGCTGATGGTAACGGCACCATGCTGGTTACGAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGTGTGGCAACTTTAATTGGTATTGTTGGACTCACTGTAGCTTTTGCTGTCCTGGTTGTGCTCCTTGCAAGATATTTCACTGGTCACTCAAAAAATCCAGATGGAAGTCGTCAGTTTATTGCCGGCCAGACAAAAGTTGGTCGTGCCGTTGATGGGGCCATCAAAATTGTCACTATTGCGGTCACCATTGTTGTGGTTGCTGTGCCGGAAGGGCTTCCACTCGCTGTTACCTTAACTCTTGCGTACTCAATGAGAAAGATGATGGCAGACAAGGCATTGGTGCGGAGGCTATCAGCATGTGAGACGATGGGGTCTGCTACAACTATTTGTAGTGATAAGACTGGAACCTTGACTGTAAATCAGATGACCATTGTTGAGGCTTATGCTGGTGGGAAGAAGATTGATCCACCAGAAAAGAAGTCAGAGTTCTCTCCCACATTACACTCTTTACTTGTTGAAGGCATTGCTCTAAACTCAAATGGCAGTGTGTATGTGCCTGAGAGTGGTGGAGAGGTGGAGGTGACAGGATCACCTACAGAGAAGGCTATTCTTAATTGGGGTATCAAGCTGGGAATGAACTTTGAAGCACTCAGAACAGAATCTACAATTCTTCATGTTTTCCCCTTCAGCTCCGATAAAAAACGTGGTGGTGTTGCATGTCAACAGGATAATCAAGTCCATGTACACTGGAAAGGTGCTGCTGAGATAGTCTTGGCATCGTGCACACAGTATATGGATGAACATGATCAATTTGTTCAATTAGATGAAGATAAGATGAAGTATTTTAAAAGGGCTATTGAGGATATGGCTTCACGTAGCCTACGTTGTGTTGCAATTGCTTATAGACCTGTTGATCCTGAGAATGTTCCTGATAGCGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGAAGACCTTGTTTTGTTGGCTATAGTTGGTTTAAAGGACCCCTGTCGACCAGGAGTAAAAGATGCAGTACGACTTTGCCAAAATGCTGGTGTTAAGGTACGAATGGTGACTGGTGATAATGTCCAAACTGCTAGAGCTATTGCTTTGGAATGTGGAATACTTGGTTCAGATTCAGATGCTACGGAACCAAATCTTATTGAAGGGAAAGTATTCCGTGCCCTATCTGATGCCCAAAGAGAAGAAGTTGCTGAGAAAATATCAGTGATGGGACGATCCTCTCCCAATGATAAGCTTCTCCTTGTGCAAGCGCTGAGAAAGAGAGGTCATGTAGTTGCTGTTACTGGAGACGGTACAAATGATGCTCCTGCATTGCATGAGGCAGATATTGGTCTTGCTATGGGTATTCAAGGAACAGAAGTTGCCAAAGAAAGCTCAGATATTATTATTTTAGATGACAACTTCGCCTCTGTTGTGAAGGTTGTAAGGTGGGGCCGATCAGTATATGCAAATATTCAAAAATTCATTCAGTTTCAGCTTACTGTTAATGTTGCAGCACTCATTATCAATGTCGTGGCAGCAATATCCTCTGGTGGTGTCCCACTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATCATGGACACACTCGGAGCATTAGCTTTGGCTACTGAACCACCAACCAATCACCTTATGGACAGGCCGCCAGTTGGTAGAAGAGAACCTCTTATTACAAATATCATGTGGAGGAACCTGCTGATACAGGCATTTTATCAAGTCACTGTGCTGCTTGTCCTCAACTTCCGTGGCCGGAGTTTGCTTCATTTGAATCACTCTAAGTTCGAAGCTATCAAAGTGCAGAATACGTTGATTTTCAATGCATTTGTACTCTGCCAAATTTTCAACGAGTTCAACGCACGAAAACCTGATGAGAAGAATATATTCAAAGGAGTCACGAAGAATTACCTCTTTATTGGTATCATTGCAATTACTGTTATCCTCCAGGTGATAATCATCGAATTTCTTGGGAAATTCACATCCACGGTTAGGCTAAATTGGAAATATTGGATTATTTCAATAATTATTGGCCTTATCAGTTGGCCTCTAGCTTTCCTTGGGAAATTCATACCTGTTCCTGAAACTCCCTTCCATGTGCTCATTATCAGAATGTTCCGCAAACGACAATCCGGCCAACCATAA | 3231 | 43.08 | MSLFKGPPQSPYGRRTDVESGSSNSGDVDDDDSSNPFEIRTTKHASVDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKEALRKIRAHAQAIRAAYLFKEAGDRLTGPGPTTAEAPNGDFSVGPEQLAVLVKDRNVEALEQHGGVKGIADMLQSNLEKGIVGDDSDLLNRKNKYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIKEGWYDGGSIAFAVILVIVVTAISDYRQSLQFQNLNKEKRNIQVEVVRGGRRIEVSIYDIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVQKHGKEPFLMSGCKVADGNGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVAFAVLVVLLARYFTGHSKNPDGSRQFIAGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTVNQMTIVEAYAGGKKIDPPEKKSEFSPTLHSLLVEGIALNSNGSVYVPESGGEVEVTGSPTEKAILNWGIKLGMNFEALRTESTILHVFPFSSDKKRGGVACQQDNQVHVHWKGAAEIVLASCTQYMDEHDQFVQLDEDKMKYFKRAIEDMASRSLRCVAIAYRPVDPENVPDSEEQLSKWALPEEDLVLLAIVGLKDPCRPGVKDAVRLCQNAGVKVRMVTGDNVQTARAIALECGILGSDSDATEPNLIEGKVFRALSDAQREEVAEKISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGGVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMDRPPVGRREPLITNIMWRNLLIQAFYQVTVLLVLNFRGRSLLHLNHSKFEAIKVQNTLIFNAFVLCQIFNEFNARKPDEKNIFKGVTKNYLFIGIIAITVILQVIIIEFLGKFTSTVRLNWKYWIISIIIGLISWPLAFLGKFIPVPETPFHVLIIRMFRKRQSGQP* | 1077 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5401128 | 5425464 | + | CsaV3_2G008960.1 | Csa02g00680 | 518737 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g00680 | 1076 | Gene3D | - | 168 | 361 | - | - | |
Csa02g00680 | 1076 | SUPERFAMILY | HAD-like | 483 | 897 | IPR036412 | - | |
Csa02g00680 | 1076 | PRINTS | P-type cation-transporting ATPase superfamily signature | 309 | 323 | - | - | |
Csa02g00680 | 1076 | PRINTS | P-type cation-transporting ATPase superfamily signature | 485 | 499 | - | - | |
Csa02g00680 | 1076 | PRINTS | P-type cation-transporting ATPase superfamily signature | 685 | 696 | - | - | |
Csa02g00680 | 1076 | PRINTS | P-type cation-transporting ATPase superfamily signature | 707 | 717 | - | - | |
Csa02g00680 | 1076 | PRINTS | P-type cation-transporting ATPase superfamily signature | 792 | 811 | - | - | |
Csa02g00680 | 1076 | PRINTS | P-type cation-transporting ATPase superfamily signature | 816 | 828 | - | - | |
Csa02g00680 | 1076 | SUPERFAMILY | Calcium ATPase, transduction domain A | 262 | 358 | IPR008250 | - | |
Csa02g00680 | 1076 | Coils | Coil | 72 | 92 | - | - | |
Csa02g00680 | 1076 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 24 | 1065 | - | - | |
Csa02g00680 | 1076 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 487 | 493 | IPR018303 | - | |
Csa02g00680 | 1076 | SFLD | p-type atpase | 467 | 844 | IPR044492 | - | |
Csa02g00680 | 1076 | CDD | P-type_ATPase_Ca_PMCA-like | 167 | 925 | - | - | |
Csa02g00680 | 1076 | MobiDBLite | consensus disorder prediction | 15 | 30 | - | - | |
Csa02g00680 | 1076 | PANTHER | CATION TRANSPORTING ATPASE | 24 | 1065 | - | - | |
Csa02g00680 | 1076 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Csa02g00680 | 1076 | SFLD | C1.7: P-type atpase like | 467 | 844 | - | - | |
Csa02g00680 | 1076 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 492 | 689 | IPR023299 | GO:0000166 | |
Csa02g00680 | 1076 | Gene3D | - | 482 | 837 | IPR023214 | - | |
Csa02g00680 | 1076 | SMART | Cation_ATPase_N_a_2 | 139 | 215 | IPR004014 | - | |
Csa02g00680 | 1076 | Gene3D | - | 193 | 1044 | - | - | |
Csa02g00680 | 1076 | Gene3D | - | 495 | 692 | IPR023299 | GO:0000166 | |
Csa02g00680 | 1076 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 135 | 1055 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
Csa02g00680 | 1076 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 142 | 1055 | IPR023298 | - | |
Csa02g00680 | 1076 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 425 | 508 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa02g00680 | 1076 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 230 | 401 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa02g00680 | 1076 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 759 | 873 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa02g00680 | 1076 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 35 | 77 | IPR024750 | GO:0005516 | |
Csa02g00680 | 1076 | Pfam | E1-E2 ATPase | 262 | 463 | - | - | |
Csa02g00680 | 1076 | Gene3D | - | 45 | 101 | - | - | |
Csa02g00680 | 1076 | Pfam | Cation transport ATPase (P-type) | 537 | 618 | - | - | |
Csa02g00680 | 1076 | Pfam | Cation transporter/ATPase, N-terminus | 141 | 210 | IPR004014 | - | |
Csa02g00680 | 1076 | PRINTS | Sodium/potassium-transporting ATPase signature | 228 | 248 | - | - | |
Csa02g00680 | 1076 | PRINTS | Sodium/potassium-transporting ATPase signature | 478 | 499 | - | - | |
Csa02g00680 | 1076 | PRINTS | Sodium/potassium-transporting ATPase signature | 603 | 621 | - | - | |
Csa02g00680 | 1076 | Pfam | Cation transporting ATPase, C-terminus | 877 | 1053 | IPR006068 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02374 | Csa-Chr1:20923187 | Csa02g00680 | Csa-Chr2:5401128 | 5.88E-110 | dispersed | |
Csa02g00680 | Csa-Chr2:5401128 | Csa07g02289 | Csa-Chr7:21300958 | 0 | dispersed | |
Csa02g00680 | Csa-Chr2:5401128 | Csa02g00321 | Csa-Chr2:2193143 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g00680 | K01537 | - | csv:101211703 | 2033.45 |