Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00680 ATGAGTTTATTCAAGGGCCCTCCTCAGTCTCCTTACGGTAGACGGACTGATGTCGAGTCCGGTAGCAGCAATTCCGGCGATGTCGACGACGATGATTCTTCTAATCCATTTGAAATTCGCACCACTAAACATGCTTCTGTTGACAGACTCCGCCGCTGGAGACAAGCTGCCCTTGTGTTAAATGCTTCTCGACGATTTCGGTATACTTTAGACTTAAAAAAGGAAGAAGAGAAGAAAGAAGCTTTGAGAAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATATCTCTTTAAAGAGGCTGGGGATCGTTTAACAGGACCAGGGCCTACAACAGCAGAAGCTCCAAATGGTGATTTTTCTGTTGGACCAGAGCAACTGGCTGTGTTGGTAAAGGATCGTAATGTTGAAGCTCTGGAGCAGCATGGAGGGGTTAAAGGGATAGCAGATATGTTGCAATCGAATTTAGAGAAGGGGATAGTTGGTGATGATTCTGATTTATTAAATCGGAAAAACAAGTATGGTTCAAACACATATCCCCAGAAACCGGGAAGGAGTTTTTGGAGGTTTCTCTGGGAAGCTTGGCAAGATCTTACATTAATCATATTGATGATAGCTGCTGTTGCTTCGTTGGTGCTAGGCATAAAAACTGAGGGAATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCAGTTATTCTCGTCATTGTTGTAACAGCTATTAGTGACTATCGACAATCTCTTCAATTCCAGAACTTGAATAAGGAGAAGAGGAACATACAAGTGGAGGTTGTTAGAGGTGGCCGTCGAATTGAGGTCTCAATTTATGACATTGTTGTTGGCGATGTCATACCGCTCAATATTGGTGATCAGGTCCCTGCTGATGGCATCTTAATTTCTGGGCACTCACTTGCTATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTTCAAAAGCATGGTAAGGAACCATTCTTGATGTCTGGATGCAAAGTAGCTGATGGTAACGGCACCATGCTGGTTACGAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGTGTGGCAACTTTAATTGGTATTGTTGGACTCACTGTAGCTTTTGCTGTCCTGGTTGTGCTCCTTGCAAGATATTTCACTGGTCACTCAAAAAATCCAGATGGAAGTCGTCAGTTTATTGCCGGCCAGACAAAAGTTGGTCGTGCCGTTGATGGGGCCATCAAAATTGTCACTATTGCGGTCACCATTGTTGTGGTTGCTGTGCCGGAAGGGCTTCCACTCGCTGTTACCTTAACTCTTGCGTACTCAATGAGAAAGATGATGGCAGACAAGGCATTGGTGCGGAGGCTATCAGCATGTGAGACGATGGGGTCTGCTACAACTATTTGTAGTGATAAGACTGGAACCTTGACTGTAAATCAGATGACCATTGTTGAGGCTTATGCTGGTGGGAAGAAGATTGATCCACCAGAAAAGAAGTCAGAGTTCTCTCCCACATTACACTCTTTACTTGTTGAAGGCATTGCTCTAAACTCAAATGGCAGTGTGTATGTGCCTGAGAGTGGTGGAGAGGTGGAGGTGACAGGATCACCTACAGAGAAGGCTATTCTTAATTGGGGTATCAAGCTGGGAATGAACTTTGAAGCACTCAGAACAGAATCTACAATTCTTCATGTTTTCCCCTTCAGCTCCGATAAAAAACGTGGTGGTGTTGCATGTCAACAGGATAATCAAGTCCATGTACACTGGAAAGGTGCTGCTGAGATAGTCTTGGCATCGTGCACACAGTATATGGATGAACATGATCAATTTGTTCAATTAGATGAAGATAAGATGAAGTATTTTAAAAGGGCTATTGAGGATATGGCTTCACGTAGCCTACGTTGTGTTGCAATTGCTTATAGACCTGTTGATCCTGAGAATGTTCCTGATAGCGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGAAGACCTTGTTTTGTTGGCTATAGTTGGTTTAAAGGACCCCTGTCGACCAGGAGTAAAAGATGCAGTACGACTTTGCCAAAATGCTGGTGTTAAGGTACGAATGGTGACTGGTGATAATGTCCAAACTGCTAGAGCTATTGCTTTGGAATGTGGAATACTTGGTTCAGATTCAGATGCTACGGAACCAAATCTTATTGAAGGGAAAGTATTCCGTGCCCTATCTGATGCCCAAAGAGAAGAAGTTGCTGAGAAAATATCAGTGATGGGACGATCCTCTCCCAATGATAAGCTTCTCCTTGTGCAAGCGCTGAGAAAGAGAGGTCATGTAGTTGCTGTTACTGGAGACGGTACAAATGATGCTCCTGCATTGCATGAGGCAGATATTGGTCTTGCTATGGGTATTCAAGGAACAGAAGTTGCCAAAGAAAGCTCAGATATTATTATTTTAGATGACAACTTCGCCTCTGTTGTGAAGGTTGTAAGGTGGGGCCGATCAGTATATGCAAATATTCAAAAATTCATTCAGTTTCAGCTTACTGTTAATGTTGCAGCACTCATTATCAATGTCGTGGCAGCAATATCCTCTGGTGGTGTCCCACTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATCATGGACACACTCGGAGCATTAGCTTTGGCTACTGAACCACCAACCAATCACCTTATGGACAGGCCGCCAGTTGGTAGAAGAGAACCTCTTATTACAAATATCATGTGGAGGAACCTGCTGATACAGGCATTTTATCAAGTCACTGTGCTGCTTGTCCTCAACTTCCGTGGCCGGAGTTTGCTTCATTTGAATCACTCTAAGTTCGAAGCTATCAAAGTGCAGAATACGTTGATTTTCAATGCATTTGTACTCTGCCAAATTTTCAACGAGTTCAACGCACGAAAACCTGATGAGAAGAATATATTCAAAGGAGTCACGAAGAATTACCTCTTTATTGGTATCATTGCAATTACTGTTATCCTCCAGGTGATAATCATCGAATTTCTTGGGAAATTCACATCCACGGTTAGGCTAAATTGGAAATATTGGATTATTTCAATAATTATTGGCCTTATCAGTTGGCCTCTAGCTTTCCTTGGGAAATTCATACCTGTTCCTGAAACTCCCTTCCATGTGCTCATTATCAGAATGTTCCGCAAACGACAATCCGGCCAACCATAA 3231 43.08 MSLFKGPPQSPYGRRTDVESGSSNSGDVDDDDSSNPFEIRTTKHASVDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKEALRKIRAHAQAIRAAYLFKEAGDRLTGPGPTTAEAPNGDFSVGPEQLAVLVKDRNVEALEQHGGVKGIADMLQSNLEKGIVGDDSDLLNRKNKYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIKEGWYDGGSIAFAVILVIVVTAISDYRQSLQFQNLNKEKRNIQVEVVRGGRRIEVSIYDIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVQKHGKEPFLMSGCKVADGNGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVAFAVLVVLLARYFTGHSKNPDGSRQFIAGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTVNQMTIVEAYAGGKKIDPPEKKSEFSPTLHSLLVEGIALNSNGSVYVPESGGEVEVTGSPTEKAILNWGIKLGMNFEALRTESTILHVFPFSSDKKRGGVACQQDNQVHVHWKGAAEIVLASCTQYMDEHDQFVQLDEDKMKYFKRAIEDMASRSLRCVAIAYRPVDPENVPDSEEQLSKWALPEEDLVLLAIVGLKDPCRPGVKDAVRLCQNAGVKVRMVTGDNVQTARAIALECGILGSDSDATEPNLIEGKVFRALSDAQREEVAEKISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGGVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMDRPPVGRREPLITNIMWRNLLIQAFYQVTVLLVLNFRGRSLLHLNHSKFEAIKVQNTLIFNAFVLCQIFNEFNARKPDEKNIFKGVTKNYLFIGIIAITVILQVIIIEFLGKFTSTVRLNWKYWIISIIIGLISWPLAFLGKFIPVPETPFHVLIIRMFRKRQSGQP* 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5401128 5425464 + CsaV3_2G008960.1 Csa02g00680 518737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00680 1076 Gene3D - 168 361 - -
Csa02g00680 1076 SUPERFAMILY HAD-like 483 897 IPR036412 -
Csa02g00680 1076 PRINTS P-type cation-transporting ATPase superfamily signature 309 323 - -
Csa02g00680 1076 PRINTS P-type cation-transporting ATPase superfamily signature 485 499 - -
Csa02g00680 1076 PRINTS P-type cation-transporting ATPase superfamily signature 685 696 - -
Csa02g00680 1076 PRINTS P-type cation-transporting ATPase superfamily signature 707 717 - -
Csa02g00680 1076 PRINTS P-type cation-transporting ATPase superfamily signature 792 811 - -
Csa02g00680 1076 PRINTS P-type cation-transporting ATPase superfamily signature 816 828 - -
Csa02g00680 1076 SUPERFAMILY Calcium ATPase, transduction domain A 262 358 IPR008250 -
Csa02g00680 1076 Coils Coil 72 92 - -
Csa02g00680 1076 PANTHER CALCIUM-TRANSPORTING ATPASE 24 1065 - -
Csa02g00680 1076 ProSitePatterns E1-E2 ATPases phosphorylation site. 487 493 IPR018303 -
Csa02g00680 1076 SFLD p-type atpase 467 844 IPR044492 -
Csa02g00680 1076 CDD P-type_ATPase_Ca_PMCA-like 167 925 - -
Csa02g00680 1076 MobiDBLite consensus disorder prediction 15 30 - -
Csa02g00680 1076 PANTHER CATION TRANSPORTING ATPASE 24 1065 - -
Csa02g00680 1076 MobiDBLite consensus disorder prediction 1 40 - -
Csa02g00680 1076 SFLD C1.7: P-type atpase like 467 844 - -
Csa02g00680 1076 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 492 689 IPR023299 GO:0000166
Csa02g00680 1076 Gene3D - 482 837 IPR023214 -
Csa02g00680 1076 SMART Cation_ATPase_N_a_2 139 215 IPR004014 -
Csa02g00680 1076 Gene3D - 193 1044 - -
Csa02g00680 1076 Gene3D - 495 692 IPR023299 GO:0000166
Csa02g00680 1076 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 135 1055 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Csa02g00680 1076 SUPERFAMILY Calcium ATPase, transmembrane domain M 142 1055 IPR023298 -
Csa02g00680 1076 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 425 508 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g00680 1076 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 230 401 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g00680 1076 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 759 873 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g00680 1076 Pfam Ca2+-ATPase N terminal autoinhibitory domain 35 77 IPR024750 GO:0005516
Csa02g00680 1076 Pfam E1-E2 ATPase 262 463 - -
Csa02g00680 1076 Gene3D - 45 101 - -
Csa02g00680 1076 Pfam Cation transport ATPase (P-type) 537 618 - -
Csa02g00680 1076 Pfam Cation transporter/ATPase, N-terminus 141 210 IPR004014 -
Csa02g00680 1076 PRINTS Sodium/potassium-transporting ATPase signature 228 248 - -
Csa02g00680 1076 PRINTS Sodium/potassium-transporting ATPase signature 478 499 - -
Csa02g00680 1076 PRINTS Sodium/potassium-transporting ATPase signature 603 621 - -
Csa02g00680 1076 Pfam Cation transporting ATPase, C-terminus 877 1053 IPR006068 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02374 Csa-Chr1:20923187 Csa02g00680 Csa-Chr2:5401128 5.88E-110 dispersed
Csa02g00680 Csa-Chr2:5401128 Csa07g02289 Csa-Chr7:21300958 0 dispersed
Csa02g00680 Csa-Chr2:5401128 Csa02g00321 Csa-Chr2:2193143 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00680 K01537 - csv:101211703 2033.45