Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00687 ATGAAGACGCCGGCGAACGGTGCCGCCGGTGCCGCCGCCGCGCCTAATTCTAACGAAGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTACCGCCGGCCGGTTACCACGTGGTGTATTTTCCTCAAGGTCATAGCGAACAGGTAGCAGCATCTTTGAGGAAAGATGTGGATGGCCAAGTCCCTAATTACCCAAGTCTTGCTTCCAAGTTACTATGTTTGCTTCATAATGTAACATTACATGCTGATCCAGAAACAGATGAAGTATATGCTCAAATGACCCTGCTGCCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCAGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACAAGCACTCATGGCGGGTTCTCCGTGCCACGCCGTGCTGCAGAGAAGATCTTCCCCCCTCTTGATTTCTCAATGCAACCCCCTGCACAAGAGCTTGTTGCTAAGGATTTGCATGATAATGTATGGACTTTCCGTCACATATATCGAGGGCAACCCAAACGCCATTTGCTAACAACTGGTTGGAGCTTATTTGTTAGTGGAAAGAGACTTCTTGCTGGCGATTCAGTTTTGTTCATAAGAGATGAAAAACAACAGCTTCTATTGGGCATTAGGCGAGCGAACAGGCAACCGACAAACTTATCATCATCAGTGTTGTCAAGTGATAGTATGCATATTGGTATTCTTGCAGCTGCTGCACATGCTGCTGCAAACAATAGCCCTTTCACCGTCTTCTACAACCCAAGAGCAAGTCCTTCAGAATTTGTCATTCCTCTGGCCAAATATTACAAGGCAGTGTCTGCAAACCAAATATCACTCGGAATGCGCTTCAGAATGATGTTTGAAACTGAAGAGTCTGGAACCAGAAGGTATATGGGCACTATTACTGGTATAAGTGATCTTGATCCTGTTCGATGGAAGGGCTCACAGTGGCGTAATCTACAGGTTGGGTGGGATGAGTCGACTGGAGGAGAAAGACGTAATCGAGTCTCCGTATGGGAGATTGAGCCTGTTATTGCTCCATTTTTCATTTGTCCCCCTCCTTTTTTGAGATCGAAACGTCCGAGGCAACCGGGAATGCCAGATGACGACTCCTCCGATTTGGATGGTATATTTAAAAGAACAATGTTTGGTGACGATTTTTGCATGAAAGATCCACAGGGATATCCTGGCCTAAACTTAGTTCAATGGATGAATATGCAAAACCCTTCACTTTCTAATTCAATGCAGCAAAATTATATGCATTCGTTTTCTGGGTCTATGCTTCCAAACCTTGGTAGTGTCGATATTTCTCGACAACTTGGTTTGTCAAATGCACAACTTCCTCAATCAAACAACATACAGTTCAATGCACAAAGGCTACTTTCTCAGGCTCAACAGTTAGATCAGCTACCTAAGCTACCGACAAGTATGAACTCGTTGGGGTCCGTTGTGCAGCCACCACAGCAGTTGGATGATATGTCTCAGCAGACGCGACAAAATTTGATTAACCAAAACGCAGTCTCGAGTCAGATTCAGGCTCAAATAATGCAGCAGCCTCACACTAATGGGATCCTACAACAGCAAACTGCTTTGCAAAACCAGCAGCTTCAGAGAAATGCCCCTCAGAATTTGCAAATGCAGCAGCATCAGCAAATTTTGAGTCAGAATCAACAACAGAATATGAATCCGTCACCGCACCTGGAACAGTTAAATCATCAGTTGCAAATGTCGGACAATCAGGTTCATATACAGATGTTGCAGAAGTTTCAACAGCAGCCGCAATCACTTTTGGCTCAGCAGTCTGCTCTTCAGCCTTCTCAACTCGTCCAATTACCAGATCAGCAGAGACAGTCGGTAGATGCGTCCCAAAGCTTTTCCAGGTCCATGTCATCTAACCAAATGCTCGACATTCCTCAATCCACCCCAGCTGCAGGCCCTCCATCAAATGCATTACCACAGCAGGCAGCAAATTGCAATGGCCAGACGAATAATCGGTTCTCGAATCAGCATTTGCAGCCGAAACTTCCACAACTACAGCAACCAGCTTCATCTACTGTACTTTCTGATATGTCTAGGCCAATGGGACTTCCTCCTGCCCAAATAAACAATCAGCTCTCTGCAGCTACAAGTAGTTTGATAACAGGAGTGGCAGGAGCTGGCCAATCTGGAATCACGGACGACATTCCGTCGTGCTCCACGTCACCTTCCACAAACAATTGTTCCAGTTTGGTTCAACCAGTAGCCAACGGAAGGGTTCATCGAACCACAGGATTGGTTGAGGATGTTGCTCAATCAACTGCAACAATATTCAGTTCAAATACATTGGATAACATGTCACCAAATGCCAACTTAGTTCATAAAGATTTGCCACAAAAGACTGCTGTTAAACCTTCACTGAACATTTCCAAGAATCAAAGCCATGGAATTTTTGCTCAACAAACTTTCTTAAGTGGTGTTGTTGCTCAAACGGATTTCTTGGATACGTCATCCTCTACAACCTCGGCTTGCCTTTCTCAGAATGATGCTCAATTGCAGCAGAATAACATGATGTCTTTCAACTCACAGCCAATGTTATTTAAAGATAATTCTCAAGATTTGGAAGTACCAACCGATCTCCATAACATTCCGTACGGGAATCATGTCGATGGACAAATGGTAGCGCAGTTAAGTTCCGATCCTTTGTTAGACAAAGGCATTGGAGGTTTGGGGAAAGATTTCTCCAATAATTTCTCTTCTGGGGCCATGCTCACCACCTATGATGCACAGAAAGATCCTCAACAGGAAATTTCTTCATCTATAGTTTCCCAATCATTTGGTATTCCAGACATGACATTTAATTCTATGGATTCAACGATAAATGATAATACCTTCTTGAATAGAAACCAATGGGCCCCTCCGCCTCCATTCCAGCGTATGCGAACCTACACCAAGGTTTACAAACGTGGAGCTGTTGGGAGATCTATTGATATCGCTCGTTACTCGGGTTATGATGAGCTTAAGCAAGACCTTGCCCGTAGGTTTGGTATCGAGGGACAATTAGAGGACAGGCAAAAGATAGGCTGGAAACTTGTCTATGTGGATCATGAAAATGACGTTTTGCTCGTAGGGGACGACCCTTGGGATGACTTTGTGAACTGTGTACGGAGCATCAAGATCCTCTCTCCACAGGAAGTCCAACAAATGAGCTTGGACGGAGATATTGGTAATGGGGTCCTACCGAACCAAGCCTGCAGTAGTTCTGATGGTGGAAATGCTTAA 3324 44.8 MKTPANGAAGAAAAPNSNEGGLEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLRKDVDGQVPNYPSLASKLLCLLHNVTLHADPETDEVYAQMTLLPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSVWEIEPVIAPFFICPPPFLRSKRPRQPGMPDDDSSDLDGIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNSMQQNYMHSFSGSMLPNLGSVDISRQLGLSNAQLPQSNNIQFNAQRLLSQAQQLDQLPKLPTSMNSLGSVVQPPQQLDDMSQQTRQNLINQNAVSSQIQAQIMQQPHTNGILQQQTALQNQQLQRNAPQNLQMQQHQQILSQNQQQNMNPSPHLEQLNHQLQMSDNQVHIQMLQKFQQQPQSLLAQQSALQPSQLVQLPDQQRQSVDASQSFSRSMSSNQMLDIPQSTPAAGPPSNALPQQAANCNGQTNNRFSNQHLQPKLPQLQQPASSTVLSDMSRPMGLPPAQINNQLSAATSSLITGVAGAGQSGITDDIPSCSTSPSTNNCSSLVQPVANGRVHRTTGLVEDVAQSTATIFSSNTLDNMSPNANLVHKDLPQKTAVKPSLNISKNQSHGIFAQQTFLSGVVAQTDFLDTSSSTTSACLSQNDAQLQQNNMMSFNSQPMLFKDNSQDLEVPTDLHNIPYGNHVDGQMVAQLSSDPLLDKGIGGLGKDFSNNFSSGAMLTTYDAQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDNTFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDIARYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWDDFVNCVRSIKILSPQEVQQMSLDGDIGNGVLPNQACSSSDGGNA* 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5531533 5540452 + CsaV3_2G009030.1 Csa02g00687 518744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00687 1107 Gene3D - 298 368 - -
Csa02g00687 1107 MobiDBLite consensus disorder prediction 1 20 - -
Csa02g00687 1107 SUPERFAMILY DNA-binding pseudobarrel domain 123 263 IPR015300 -
Csa02g00687 1107 MobiDBLite consensus disorder prediction 563 586 - -
Csa02g00687 1107 ProSiteProfiles PB1 domain profile. 995 1080 IPR000270 GO:0005515
Csa02g00687 1107 CDD B3_DNA 133 225 IPR003340 GO:0003677
Csa02g00687 1107 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Csa02g00687 1107 SUPERFAMILY CAD & PB1 domains 1012 1074 - -
Csa02g00687 1107 Pfam Auxin response factor 260 343 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Csa02g00687 1107 Gene3D - 991 1084 - -
Csa02g00687 1107 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1101 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa02g00687 1107 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Csa02g00687 1107 Pfam AUX/IAA family 993 1080 IPR033389 -
Csa02g00687 1107 MobiDBLite consensus disorder prediction 631 690 - -
Csa02g00687 1107 Gene3D - 132 235 IPR015300 -
Csa02g00687 1107 SMART B3_2 134 236 IPR003340 GO:0003677
Csa02g00687 1107 PANTHER AUXIN RESPONSE FACTOR 1 1101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00006 Csa-Chr2:153359 Csa02g00687 Csa-Chr2:5531533 0 dispersed
Csa02g00687 Csa-Chr2:5531533 Csa05g01402 Csa-Chr5:15021321 4.25E-31 dispersed
Csa06g02577 Csa-Chr6:22760384 Csa02g00687 Csa-Chr2:5531533 4.01E-57 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30883 PF02309 AUX_IAA 5.40E-07 CL0072 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00687 - - csv:101205542 2066.2