Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00687 ATGAAGACGCCGGCGAACGGTGCCGCCGGTGCCGCCGCCGCGCCTAATTCTAACGAAGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTACCGCCGGCCGGTTACCACGTGGTGTATTTTCCTCAAGGTCATAGCGAACAGGTAGCAGCATCTTTGAGGAAAGATGTGGATGGCCAAGTCCCTAATTACCCAAGTCTTGCTTCCAAGTTACTATGTTTGCTTCATAATGTAACATTACATGCTGATCCAGAAACAGATGAAGTATATGCTCAAATGACCCTGCTGCCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCAGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACAAGCACTCATGGCGGGTTCTCCGTGCCACGCCGTGCTGCAGAGAAGATCTTCCCCCCTCTTGATTTCTCAATGCAACCCCCTGCACAAGAGCTTGTTGCTAAGGATTTGCATGATAATGTATGGACTTTCCGTCACATATATCGAGGGCAACCCAAACGCCATTTGCTAACAACTGGTTGGAGCTTATTTGTTAGTGGAAAGAGACTTCTTGCTGGCGATTCAGTTTTGTTCATAAGAGATGAAAAACAACAGCTTCTATTGGGCATTAGGCGAGCGAACAGGCAACCGACAAACTTATCATCATCAGTGTTGTCAAGTGATAGTATGCATATTGGTATTCTTGCAGCTGCTGCACATGCTGCTGCAAACAATAGCCCTTTCACCGTCTTCTACAACCCAAGAGCAAGTCCTTCAGAATTTGTCATTCCTCTGGCCAAATATTACAAGGCAGTGTCTGCAAACCAAATATCACTCGGAATGCGCTTCAGAATGATGTTTGAAACTGAAGAGTCTGGAACCAGAAGGTATATGGGCACTATTACTGGTATAAGTGATCTTGATCCTGTTCGATGGAAGGGCTCACAGTGGCGTAATCTACAGGTTGGGTGGGATGAGTCGACTGGAGGAGAAAGACGTAATCGAGTCTCCGTATGGGAGATTGAGCCTGTTATTGCTCCATTTTTCATTTGTCCCCCTCCTTTTTTGAGATCGAAACGTCCGAGGCAACCGGGAATGCCAGATGACGACTCCTCCGATTTGGATGGTATATTTAAAAGAACAATGTTTGGTGACGATTTTTGCATGAAAGATCCACAGGGATATCCTGGCCTAAACTTAGTTCAATGGATGAATATGCAAAACCCTTCACTTTCTAATTCAATGCAGCAAAATTATATGCATTCGTTTTCTGGGTCTATGCTTCCAAACCTTGGTAGTGTCGATATTTCTCGACAACTTGGTTTGTCAAATGCACAACTTCCTCAATCAAACAACATACAGTTCAATGCACAAAGGCTACTTTCTCAGGCTCAACAGTTAGATCAGCTACCTAAGCTACCGACAAGTATGAACTCGTTGGGGTCCGTTGTGCAGCCACCACAGCAGTTGGATGATATGTCTCAGCAGACGCGACAAAATTTGATTAACCAAAACGCAGTCTCGAGTCAGATTCAGGCTCAAATAATGCAGCAGCCTCACACTAATGGGATCCTACAACAGCAAACTGCTTTGCAAAACCAGCAGCTTCAGAGAAATGCCCCTCAGAATTTGCAAATGCAGCAGCATCAGCAAATTTTGAGTCAGAATCAACAACAGAATATGAATCCGTCACCGCACCTGGAACAGTTAAATCATCAGTTGCAAATGTCGGACAATCAGGTTCATATACAGATGTTGCAGAAGTTTCAACAGCAGCCGCAATCACTTTTGGCTCAGCAGTCTGCTCTTCAGCCTTCTCAACTCGTCCAATTACCAGATCAGCAGAGACAGTCGGTAGATGCGTCCCAAAGCTTTTCCAGGTCCATGTCATCTAACCAAATGCTCGACATTCCTCAATCCACCCCAGCTGCAGGCCCTCCATCAAATGCATTACCACAGCAGGCAGCAAATTGCAATGGCCAGACGAATAATCGGTTCTCGAATCAGCATTTGCAGCCGAAACTTCCACAACTACAGCAACCAGCTTCATCTACTGTACTTTCTGATATGTCTAGGCCAATGGGACTTCCTCCTGCCCAAATAAACAATCAGCTCTCTGCAGCTACAAGTAGTTTGATAACAGGAGTGGCAGGAGCTGGCCAATCTGGAATCACGGACGACATTCCGTCGTGCTCCACGTCACCTTCCACAAACAATTGTTCCAGTTTGGTTCAACCAGTAGCCAACGGAAGGGTTCATCGAACCACAGGATTGGTTGAGGATGTTGCTCAATCAACTGCAACAATATTCAGTTCAAATACATTGGATAACATGTCACCAAATGCCAACTTAGTTCATAAAGATTTGCCACAAAAGACTGCTGTTAAACCTTCACTGAACATTTCCAAGAATCAAAGCCATGGAATTTTTGCTCAACAAACTTTCTTAAGTGGTGTTGTTGCTCAAACGGATTTCTTGGATACGTCATCCTCTACAACCTCGGCTTGCCTTTCTCAGAATGATGCTCAATTGCAGCAGAATAACATGATGTCTTTCAACTCACAGCCAATGTTATTTAAAGATAATTCTCAAGATTTGGAAGTACCAACCGATCTCCATAACATTCCGTACGGGAATCATGTCGATGGACAAATGGTAGCGCAGTTAAGTTCCGATCCTTTGTTAGACAAAGGCATTGGAGGTTTGGGGAAAGATTTCTCCAATAATTTCTCTTCTGGGGCCATGCTCACCACCTATGATGCACAGAAAGATCCTCAACAGGAAATTTCTTCATCTATAGTTTCCCAATCATTTGGTATTCCAGACATGACATTTAATTCTATGGATTCAACGATAAATGATAATACCTTCTTGAATAGAAACCAATGGGCCCCTCCGCCTCCATTCCAGCGTATGCGAACCTACACCAAGGTTTACAAACGTGGAGCTGTTGGGAGATCTATTGATATCGCTCGTTACTCGGGTTATGATGAGCTTAAGCAAGACCTTGCCCGTAGGTTTGGTATCGAGGGACAATTAGAGGACAGGCAAAAGATAGGCTGGAAACTTGTCTATGTGGATCATGAAAATGACGTTTTGCTCGTAGGGGACGACCCTTGGGATGACTTTGTGAACTGTGTACGGAGCATCAAGATCCTCTCTCCACAGGAAGTCCAACAAATGAGCTTGGACGGAGATATTGGTAATGGGGTCCTACCGAACCAAGCCTGCAGTAGTTCTGATGGTGGAAATGCTTAA 3324 44.8 MKTPANGAAGAAAAPNSNEGGLEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLRKDVDGQVPNYPSLASKLLCLLHNVTLHADPETDEVYAQMTLLPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSVWEIEPVIAPFFICPPPFLRSKRPRQPGMPDDDSSDLDGIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNSMQQNYMHSFSGSMLPNLGSVDISRQLGLSNAQLPQSNNIQFNAQRLLSQAQQLDQLPKLPTSMNSLGSVVQPPQQLDDMSQQTRQNLINQNAVSSQIQAQIMQQPHTNGILQQQTALQNQQLQRNAPQNLQMQQHQQILSQNQQQNMNPSPHLEQLNHQLQMSDNQVHIQMLQKFQQQPQSLLAQQSALQPSQLVQLPDQQRQSVDASQSFSRSMSSNQMLDIPQSTPAAGPPSNALPQQAANCNGQTNNRFSNQHLQPKLPQLQQPASSTVLSDMSRPMGLPPAQINNQLSAATSSLITGVAGAGQSGITDDIPSCSTSPSTNNCSSLVQPVANGRVHRTTGLVEDVAQSTATIFSSNTLDNMSPNANLVHKDLPQKTAVKPSLNISKNQSHGIFAQQTFLSGVVAQTDFLDTSSSTTSACLSQNDAQLQQNNMMSFNSQPMLFKDNSQDLEVPTDLHNIPYGNHVDGQMVAQLSSDPLLDKGIGGLGKDFSNNFSSGAMLTTYDAQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDNTFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDIARYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWDDFVNCVRSIKILSPQEVQQMSLDGDIGNGVLPNQACSSSDGGNA* 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5531533 5540452 + CsaV3_2G009030.1 Csa02g00687 518744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00687 1107 Gene3D - 298 368 - -
Csa02g00687 1107 MobiDBLite consensus disorder prediction 1 20 - -
Csa02g00687 1107 SUPERFAMILY DNA-binding pseudobarrel domain 123 263 IPR015300 -
Csa02g00687 1107 MobiDBLite consensus disorder prediction 563 586 - -
Csa02g00687 1107 ProSiteProfiles PB1 domain profile. 995 1080 IPR000270 GO:0005515
Csa02g00687 1107 CDD B3_DNA 133 225 IPR003340 GO:0003677
Csa02g00687 1107 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Csa02g00687 1107 SUPERFAMILY CAD & PB1 domains 1012 1074 - -
Csa02g00687 1107 Pfam Auxin response factor 260 343 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Csa02g00687 1107 Gene3D - 991 1084 - -
Csa02g00687 1107 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1101 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa02g00687 1107 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Csa02g00687 1107 Pfam AUX/IAA family 993 1080 IPR033389 -
Csa02g00687 1107 MobiDBLite consensus disorder prediction 631 690 - -
Csa02g00687 1107 Gene3D - 132 235 IPR015300 -
Csa02g00687 1107 SMART B3_2 134 236 IPR003340 GO:0003677
Csa02g00687 1107 PANTHER AUXIN RESPONSE FACTOR 1 1101 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00687 - - - csv:101205542 2066.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00006 Csa-Chr2:153359 Csa02g00687 Csa-Chr2:5531533 0 dispersed
Csa02g00687 Csa-Chr2:5531533 Csa05g01402 Csa-Chr5:15021321 4.25E-31 dispersed
Csa06g02577 Csa-Chr6:22760384 Csa02g00687 Csa-Chr2:5531533 4.01E-57 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g01483 . 29 249 B3 DNA Binding Superfamily AT3G24650 64.5 6.0e-69 259.2
Csa05g02582 . 16 345 B3 DNA Binding Superfamily AT1G25560 62.7 8.6e-109 390.6
Csa05g01482 . 34 303 B3 DNA Binding Superfamily AT1G25560 63.9 5.6e-92 334.7
Csa03g03451 . 41 164 B3 DNA Binding Superfamily AT1G25560 64.5 3.6e-38 156.0
Csa05g00141 . 53 161 B3 DNA Binding Superfamily AT1G25560 66.1 5.2e-37 152.1
Csa06g00841 . 18 133 B3 DNA Binding Superfamily AT1G25560 62.1 6.7e-37 151.8
Csa05g00141 . 52 166 B3 DNA Binding Superfamily AT1G01030 83.6 2.1e-53 206.5
Csa06g00841 . 17 127 B3 DNA Binding Superfamily AT1G01030 80.2 1.4e-49 193.7
Csa05g02582 . 179 287 B3 DNA Binding Superfamily AT1G01030 67.0 9.7e-38 154.5
Csa06g01198 . 4 688 B3 DNA Binding Superfamily AT4G30080 57.1 1.6e-209 726.1
Csa06g02577 . 41 622 B3 DNA Binding Superfamily AT4G30080 58.3 4.6e-180 628.2
Csa06g02262 . 1 605 B3 DNA Binding Superfamily AT4G30080 51.8 4.1e-165 578.6
Csa01g00478 . 1 735 B3 DNA Binding Superfamily AT2G30470 51.5 3.4e-198 688.7
Csa02g01212 . 1 365 B3 DNA Binding Superfamily AT3G18990 57.3 2.5e-103 372.5
Csa05g01247 . 5 676 B3 DNA Binding Superfamily AT1G59750 67.9 8.6e-248 853.2
Csa06g03820 CCT 14 374 B3 DNA Binding Superfamily AT1G59750 55.6 1.0e-107 387.9
Csa02g00687 . 20 401 B3 DNA Binding Superfamily AT1G59750 51.4 4.3e-106 382.5
Csa01g02582 CCT 23 396 B3 DNA Binding Superfamily AT1G59750 53.4 2.1e-105 380.2
Csa05g01402 . 24 384 B3 DNA Binding Superfamily AT1G59750 53.8 2.4e-104 376.7
Csa02g00006 . 23 358 B3 DNA Binding Superfamily AT1G59750 54.4 1.3e-102 370.9
Csa03g04263 . 42 379 B3 DNA Binding Superfamily AT1G59750 51.9 1.9e-98 357.1
Csa06g01198 . 3 688 B3 DNA Binding Superfamily AT2G28350 58.0 5.5e-210 727.6
Csa06g02577 . 15 622 B3 DNA Binding Superfamily AT2G28350 52.6 1.7e-163 573.2
Csa06g02262 . 9 458 B3 DNA Binding Superfamily AT2G28350 59.2 6.4e-150 528.1
Csa07g01449 . 14 685 B3 DNA Binding Superfamily AT2G46530 55.5 8.8e-186 647.1
Csa04g00677 . 19 693 B3 DNA Binding Superfamily AT2G46530 53.5 5.5e-180 627.9
Csa05g00191 . 18 671 B3 DNA Binding Superfamily AT2G46530 53.4 5.4e-175 611.3
Csa05g01247 . 13 661 B3 DNA Binding Superfamily AT2G46530 51.7 1.2e-163 573.5
Csa06g03820 CCT 11 359 B3 DNA Binding Superfamily AT2G46530 53.6 2.6e-97 353.2
Csa05g01402 . 15 368 B3 DNA Binding Superfamily AT2G46530 51.5 5.0e-96 349.0
Csa01g02582 CCT 1 368 B3 DNA Binding Superfamily AT2G46530 50.1 7.2e-95 345.1
Csa06g01198 . 4 688 B3 DNA Binding Superfamily AT4G30080 57.1 1.6e-209 726.1
Csa06g02577 . 41 622 B3 DNA Binding Superfamily AT4G30080 58.3 4.6e-180 628.2
Csa06g02262 . 1 605 B3 DNA Binding Superfamily AT4G30080 51.8 4.1e-165 578.6
Csa07g01449 . 50 672 B3 DNA Binding Superfamily AT3G61830 55.5 9.6e-176 613.6
Csa04g00677 . 55 683 B3 DNA Binding Superfamily AT3G61830 51.4 4.6e-162 568.2
Csa05g00191 . 54 678 B3 DNA Binding Superfamily AT3G61830 50.1 1.3e-156 550.1
Csa05g01247 . 53 647 B3 DNA Binding Superfamily AT3G61830 51.7 6.0e-154 541.2
Csa06g03820 CCT 42 355 B3 DNA Binding Superfamily AT3G61830 53.2 7.0e-86 315.1
Csa05g01402 . 52 365 B3 DNA Binding Superfamily AT3G61830 51.7 4.6e-85 312.4
Csa01g02582 CCT 51 364 B3 DNA Binding Superfamily AT3G61830 51.4 4.3e-83 305.8
Csa02g00006 . 1 972 B3 DNA Binding Superfamily AT1G19220 59.6 3.7e-288 988.0
Csa01g00009 . 41 396 B3 DNA Binding Superfamily AT1G19220 52.5 1.7e-104 377.9
Csa05g01247 . 26 387 B3 DNA Binding Superfamily AT1G19220 50.7 3.5e-97 353.6
Csa06g03662 . 46 380 B3 DNA Binding Superfamily AT1G19220 50.3 5.4e-90 329.7
Csa07g01449 . 20 224 B3 DNA Binding Superfamily AT1G43950 56.1 4.6e-60 228.0
Csa04g00677 . 25 229 B3 DNA Binding Superfamily AT1G43950 56.3 3.0e-59 225.3
Csa05g00191 . 24 228 B3 DNA Binding Superfamily AT1G43950 55.8 5.6e-58 221.1
Csa05g01247 . 19 227 B3 DNA Binding Superfamily AT1G43950 51.7 9.5e-58 220.3
Csa01g00009 . 41 246 B3 DNA Binding Superfamily AT1G43950 52.9 4.7e-57 218.0
Csa06g03662 . 150 435 B3 DNA Binding Superfamily AT2G33860 65.9 8.3e-109 391.0
Csa06g01677 . 168 451 B3 DNA Binding Superfamily AT2G33860 58.0 1.3e-90 330.5
Csa01g00009 . 147 436 B3 DNA Binding Superfamily AT2G33860 51.0 8.3e-77 284.6
Csa05g01402 . 128 359 B3 DNA Binding Superfamily AT2G33860 56.5 9.5e-73 271.2
Csa06g03820 CCT 118 349 B3 DNA Binding Superfamily AT2G33860 56.9 6.8e-71 265.0
Csa01g02582 CCT 127 358 B3 DNA Binding Superfamily AT2G33860 56.9 1.2e-70 264.2
Csa02g00006 . 126 356 B3 DNA Binding Superfamily AT2G33860 54.5 6.4e-69 258.5
Csa02g00687 . 134 365 B3 DNA Binding Superfamily AT2G33860 54.7 8.3e-69 258.1
Csa04g00677 . 130 357 B3 DNA Binding Superfamily AT2G33860 52.4 1.9e-68 256.9
Csa03g04263 . 149 407 B3 DNA Binding Superfamily AT2G33860 53.5 4.1e-68 255.8
Csa07g01449 . 125 352 B3 DNA Binding Superfamily AT2G33860 52.8 2.3e-66 250.0
Csa05g00191 . 129 356 B3 DNA Binding Superfamily AT2G33860 51.1 6.2e-64 241.9
Csa06g01677 . 48 750 B3 DNA Binding Superfamily AT5G60450 57.2 9.0e-233 803.5
Csa02g00006 . 14 374 B3 DNA Binding Superfamily AT5G60450 50.1 7.7e-99 358.6
Csa03g04263 . 20 939 B3 DNA Binding Superfamily AT1G19850 61.9 6.9e-293 1003.4
Csa02g00006 . 9 355 B3 DNA Binding Superfamily AT1G19850 71.5 6.3e-145 511.9
Csa05g01247 . 16 357 B3 DNA Binding Superfamily AT1G19850 52.5 9.0e-99 358.6
Csa06g03820 CCT 7 903 B3 DNA Binding Superfamily AT1G30330 71.1 0.0e+00 1174.5
Csa01g02582 CCT 1 895 B3 DNA Binding Superfamily AT1G30330 67.6 0.0e+00 1166.0
Csa05g01402 . 1 850 B3 DNA Binding Superfamily AT1G30330 58.8 2.1e-260 895.6
Csa02g00006 . 1 470 B3 DNA Binding Superfamily AT1G30330 62.1 4.0e-158 555.8
Csa05g01247 . 23 383 B3 DNA Binding Superfamily AT1G30330 54.0 2.8e-103 373.6
Csa04g00677 . 25 379 B3 DNA Binding Superfamily AT1G30330 51.2 6.5e-100 362.5
Csa07g01449 . 7 352 B3 DNA Binding Superfamily AT1G30330 53.5 8.5e-100 362.1
Csa05g00191 . 24 397 B3 DNA Binding Superfamily AT1G30330 50.4 2.1e-98 357.5
Csa02g00006 . 1 972 B3 DNA Binding Superfamily AT5G20730 55.0 4.2e-266 914.8
Csa01g02582 CCT 4 469 B3 DNA Binding Superfamily AT5G20730 58.9 1.0e-150 531.6
Csa06g03820 CCT 7 459 B3 DNA Binding Superfamily AT5G20730 59.7 6.0e-148 522.3
Csa05g01402 . 1 454 B3 DNA Binding Superfamily AT5G20730 59.4 1.0e-147 521.5
Csa01g00009 . 41 393 B3 DNA Binding Superfamily AT5G20730 52.5 2.7e-103 374.0
Csa05g01247 . 6 360 B3 DNA Binding Superfamily AT5G20730 51.3 2.0e-95 347.8
Csa05g01402 . 98 819 B3 DNA Binding Superfamily AT5G37020 63.7 4.6e-247 850.9
Csa06g03820 CCT 88 865 B3 DNA Binding Superfamily AT5G37020 53.7 3.6e-199 691.8
Csa01g02582 CCT 97 858 B3 DNA Binding Superfamily AT5G37020 52.0 4.7e-191 664.8
Csa02g00006 . 96 420 B3 DNA Binding Superfamily AT5G37020 62.4 2.8e-111 399.8
Csa02g00687 . 104 461 B3 DNA Binding Superfamily AT5G37020 58.9 5.0e-108 389.0
Csa04g00677 . 1 696 B3 DNA Binding Superfamily AT4G23980 56.1 1.1e-199 693.3
Csa05g00191 . 20 672 B3 DNA Binding Superfamily AT4G23980 57.7 3.0e-197 685.3
Csa07g01449 . 17 670 B3 DNA Binding Superfamily AT4G23980 56.9 1.8e-194 676.0
Csa05g01247 . 16 647 B3 DNA Binding Superfamily AT4G23980 52.7 3.8e-168 588.6
Csa03g04263 . 46 379 B3 DNA Binding Superfamily AT4G23980 52.1 6.0e-97 352.1
Csa01g00009 . 36 834 B3 DNA Binding Superfamily AT5G62000 62.3 4.2e-287 984.2
Csa02g00687 . 8 404 B3 DNA Binding Superfamily AT5G62000 51.0 1.6e-108 391.0
Csa02g00006 . 23 380 B3 DNA Binding Superfamily AT5G62000 54.0 7.3e-106 382.1
Csa07g01483 . 29 249 B3 DNA Binding Superfamily AT3G24650 64.5 6.0e-69 259.2
Csa01g00478 . 1 735 B3 DNA Binding Superfamily AT2G30470 51.5 3.4e-198 688.7
Csa02g00006 . 1 972 B3 DNA Binding Superfamily AT1G19220 59.6 3.7e-288 988.0
Csa01g00009 . 41 396 B3 DNA Binding Superfamily AT1G19220 52.5 1.7e-104 377.9
Csa05g01247 . 26 387 B3 DNA Binding Superfamily AT1G19220 50.7 3.5e-97 353.6
Csa06g03662 . 46 380 B3 DNA Binding Superfamily AT1G19220 50.3 5.4e-90 329.7
Csa03g04263 . 20 939 B3 DNA Binding Superfamily AT1G19850 61.9 6.9e-293 1003.4
Csa02g00006 . 9 355 B3 DNA Binding Superfamily AT1G19850 71.5 6.3e-145 511.9
Csa05g01247 . 16 357 B3 DNA Binding Superfamily AT1G19850 52.5 9.0e-99 358.6
Csa06g03820 CCT 7 903 B3 DNA Binding Superfamily AT1G30330 71.1 0.0e+00 1174.5
Csa01g02582 CCT 1 895 B3 DNA Binding Superfamily AT1G30330 67.6 0.0e+00 1166.0
Csa05g01402 . 1 850 B3 DNA Binding Superfamily AT1G30330 58.8 2.1e-260 895.6
Csa02g00006 . 1 470 B3 DNA Binding Superfamily AT1G30330 62.1 4.0e-158 555.8
Csa05g01247 . 23 383 B3 DNA Binding Superfamily AT1G30330 54.0 2.8e-103 373.6
Csa04g00677 . 25 379 B3 DNA Binding Superfamily AT1G30330 51.2 6.5e-100 362.5
Csa07g01449 . 7 352 B3 DNA Binding Superfamily AT1G30330 53.5 8.5e-100 362.1
Csa05g00191 . 24 397 B3 DNA Binding Superfamily AT1G30330 50.4 2.1e-98 357.5
Csa02g00006 . 1 972 B3 DNA Binding Superfamily AT5G20730 55.0 4.2e-266 914.8
Csa01g02582 CCT 4 469 B3 DNA Binding Superfamily AT5G20730 58.9 1.0e-150 531.6
Csa06g03820 CCT 7 459 B3 DNA Binding Superfamily AT5G20730 59.7 6.0e-148 522.3
Csa05g01402 . 1 454 B3 DNA Binding Superfamily AT5G20730 59.4 1.0e-147 521.5
Csa01g00009 . 41 393 B3 DNA Binding Superfamily AT5G20730 52.5 2.7e-103 374.0
Csa05g01247 . 6 360 B3 DNA Binding Superfamily AT5G20730 51.3 2.0e-95 347.8
Csa05g01402 . 98 819 B3 DNA Binding Superfamily AT5G37020 63.7 4.6e-247 850.9
Csa06g03820 CCT 88 865 B3 DNA Binding Superfamily AT5G37020 53.7 3.6e-199 691.8
Csa01g02582 CCT 97 858 B3 DNA Binding Superfamily AT5G37020 52.0 4.7e-191 664.8
Csa02g00006 . 96 420 B3 DNA Binding Superfamily AT5G37020 62.4 2.8e-111 399.8
Csa02g00687 . 104 461 B3 DNA Binding Superfamily AT5G37020 58.9 5.0e-108 389.0
Csa06g03662 . 150 435 B3 DNA Binding Superfamily AT2G33860 65.9 8.3e-109 391.0
Csa06g01677 . 168 451 B3 DNA Binding Superfamily AT2G33860 58.0 1.3e-90 330.5
Csa01g00009 . 147 436 B3 DNA Binding Superfamily AT2G33860 51.0 8.3e-77 284.6
Csa05g01402 . 128 359 B3 DNA Binding Superfamily AT2G33860 56.5 9.5e-73 271.2
Csa06g03820 CCT 118 349 B3 DNA Binding Superfamily AT2G33860 56.9 6.8e-71 265.0
Csa01g02582 CCT 127 358 B3 DNA Binding Superfamily AT2G33860 56.9 1.2e-70 264.2
Csa02g00006 . 126 356 B3 DNA Binding Superfamily AT2G33860 54.5 6.4e-69 258.5
Csa02g00687 . 134 365 B3 DNA Binding Superfamily AT2G33860 54.7 8.3e-69 258.1
Csa04g00677 . 130 357 B3 DNA Binding Superfamily AT2G33860 52.4 1.9e-68 256.9
Csa03g04263 . 149 407 B3 DNA Binding Superfamily AT2G33860 53.5 4.1e-68 255.8
Csa07g01449 . 125 352 B3 DNA Binding Superfamily AT2G33860 52.8 2.3e-66 250.0
Csa05g00191 . 129 356 B3 DNA Binding Superfamily AT2G33860 51.1 6.2e-64 241.9
Csa06g01677 . 48 750 B3 DNA Binding Superfamily AT5G60450 57.2 9.0e-233 803.5
Csa02g00006 . 14 374 B3 DNA Binding Superfamily AT5G60450 50.1 7.7e-99 358.6
Csa05g01247 . 5 676 B3 DNA Binding Superfamily AT1G59750 67.9 8.6e-248 853.2
Csa06g03820 CCT 14 374 B3 DNA Binding Superfamily AT1G59750 55.6 1.0e-107 387.9
Csa02g00687 . 20 401 B3 DNA Binding Superfamily AT1G59750 51.4 4.3e-106 382.5
Csa01g02582 CCT 23 396 B3 DNA Binding Superfamily AT1G59750 53.4 2.1e-105 380.2
Csa05g01402 . 24 384 B3 DNA Binding Superfamily AT1G59750 53.8 2.4e-104 376.7
Csa02g00006 . 23 358 B3 DNA Binding Superfamily AT1G59750 54.4 1.3e-102 370.9
Csa03g04263 . 42 379 B3 DNA Binding Superfamily AT1G59750 51.9 1.9e-98 357.1
Csa01g00009 . 36 834 B3 DNA Binding Superfamily AT5G62000 62.3 4.2e-287 984.2
Csa02g00687 . 8 404 B3 DNA Binding Superfamily AT5G62000 51.0 1.6e-108 391.0
Csa02g00006 . 23 380 B3 DNA Binding Superfamily AT5G62000 54.0 7.3e-106 382.1
Csa07g01449 . 14 685 B3 DNA Binding Superfamily AT2G46530 55.5 8.8e-186 647.1
Csa04g00677 . 19 693 B3 DNA Binding Superfamily AT2G46530 53.5 5.5e-180 627.9
Csa05g00191 . 18 671 B3 DNA Binding Superfamily AT2G46530 53.4 5.4e-175 611.3
Csa05g01247 . 13 661 B3 DNA Binding Superfamily AT2G46530 51.7 1.2e-163 573.5
Csa06g03820 CCT 11 359 B3 DNA Binding Superfamily AT2G46530 53.6 2.6e-97 353.2
Csa05g01402 . 15 368 B3 DNA Binding Superfamily AT2G46530 51.5 5.0e-96 349.0
Csa01g02582 CCT 1 368 B3 DNA Binding Superfamily AT2G46530 50.1 7.2e-95 345.1
Csa07g01449 . 50 672 B3 DNA Binding Superfamily AT3G61830 55.5 9.6e-176 613.6
Csa04g00677 . 55 683 B3 DNA Binding Superfamily AT3G61830 51.4 4.6e-162 568.2
Csa05g00191 . 54 678 B3 DNA Binding Superfamily AT3G61830 50.1 1.3e-156 550.1
Csa05g01247 . 53 647 B3 DNA Binding Superfamily AT3G61830 51.7 6.0e-154 541.2
Csa06g03820 CCT 42 355 B3 DNA Binding Superfamily AT3G61830 53.2 7.0e-86 315.1
Csa05g01402 . 52 365 B3 DNA Binding Superfamily AT3G61830 51.7 4.6e-85 312.4
Csa01g02582 CCT 51 364 B3 DNA Binding Superfamily AT3G61830 51.4 4.3e-83 305.8
Csa04g00677 . 1 696 B3 DNA Binding Superfamily AT4G23980 56.1 1.1e-199 693.3
Csa05g00191 . 20 672 B3 DNA Binding Superfamily AT4G23980 57.7 3.0e-197 685.3
Csa07g01449 . 17 670 B3 DNA Binding Superfamily AT4G23980 56.9 1.8e-194 676.0
Csa05g01247 . 16 647 B3 DNA Binding Superfamily AT4G23980 52.7 3.8e-168 588.6
Csa03g04263 . 46 379 B3 DNA Binding Superfamily AT4G23980 52.1 6.0e-97 352.1
Csa07g01449 . 20 224 B3 DNA Binding Superfamily AT1G43950 56.1 4.6e-60 228.0
Csa04g00677 . 25 229 B3 DNA Binding Superfamily AT1G43950 56.3 3.0e-59 225.3
Csa05g00191 . 24 228 B3 DNA Binding Superfamily AT1G43950 55.8 5.6e-58 221.1
Csa05g01247 . 19 227 B3 DNA Binding Superfamily AT1G43950 51.7 9.5e-58 220.3
Csa01g00009 . 41 246 B3 DNA Binding Superfamily AT1G43950 52.9 4.7e-57 218.0
Csa06g01198 . 3 688 B3 DNA Binding Superfamily AT2G28350 58.0 5.5e-210 727.6
Csa06g02577 . 15 622 B3 DNA Binding Superfamily AT2G28350 52.6 1.7e-163 573.2
Csa06g02262 . 9 458 B3 DNA Binding Superfamily AT2G28350 59.2 6.4e-150 528.1
Csa06g01198 . 4 688 B3 DNA Binding Superfamily AT4G30080 57.1 1.6e-209 726.1
Csa06g02577 . 41 622 B3 DNA Binding Superfamily AT4G30080 58.3 4.6e-180 628.2
Csa06g02262 . 1 605 B3 DNA Binding Superfamily AT4G30080 51.8 4.1e-165 578.6
Csa05g00141 . 52 166 B3 DNA Binding Superfamily AT1G01030 83.6 2.1e-53 206.5
Csa06g00841 . 17 127 B3 DNA Binding Superfamily AT1G01030 80.2 1.4e-49 193.7
Csa05g02582 . 179 287 B3 DNA Binding Superfamily AT1G01030 67.0 9.7e-38 154.5
Csa05g02582 . 16 345 B3 DNA Binding Superfamily AT1G25560 62.7 8.6e-109 390.6
Csa05g01482 . 34 303 B3 DNA Binding Superfamily AT1G25560 63.9 5.6e-92 334.7
Csa03g03451 . 41 164 B3 DNA Binding Superfamily AT1G25560 64.5 3.6e-38 156.0
Csa05g00141 . 53 161 B3 DNA Binding Superfamily AT1G25560 66.1 5.2e-37 152.1
Csa06g00841 . 18 133 B3 DNA Binding Superfamily AT1G25560 62.1 6.7e-37 151.8
Csa07g00768 . 1 222 B3 DNA Binding Superfamily AT3G19184 63.3 1.3e-67 253.4
Csa02g01981 . 6 227 B3 DNA Binding Superfamily AT3G19184 55.3 3.7e-54 208.8
Csa02g01981 . 51 228 B3 DNA Binding Superfamily AT5G42700 58.9 2.0e-53 205.7
Csa07g00768 . 62 217 B3 DNA Binding Superfamily AT5G42700 57.6 8.6e-44 173.7
Csa02g01982 . 2 158 B3 DNA Binding Superfamily AT5G42700 54.1 3.6e-42 168.3
Csa02g01212 . 1 365 B3 DNA Binding Superfamily AT3G18990 57.3 2.5e-103 372.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005709 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30883 PF02309 AUX_IAA 5.40E-07 CL0072 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00687 Csa_Chr02 FPKM 3.782682 3.230824 6.794376 7.138999 5.187132 4.636845 5.702882 1.637195 1.993878 2.922378