Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00700 ATGGCGAAAGGAGGAGCTCAGAAGAAAGATGTTGCAGTAGCGATCGATAAAGACAAATGCAGTCAATACGCTTTGAAATGGGCAATCGAACGGCTTCTGAGCAGAGGTCAAGTTGTCACTCTCCTTCATGTTAAACAAAAACCGTCTTCTTCTGCAGCACATTCGATCACGAGTTTGAGTGCGGATTCGGATGTAGATGAAGCGGCTTTGAATAGACAGCAGATTGAAAACCATGCGAGAGATCAGTTCTTCCTTCCATTTCGTTGCATTTGTACAAGAAACAATATAGCATGCAATGAGGTGATGTTAGAGGAAGGAGAGATTCCAAAGACATTAACAAATTATGTCACCAAAAATGTTGTAGACATTTTAGTACTTGGTGCTCCTACAAGATCAATTTACAAGAGATTCAAATCAGATGTCCCAAGTACGGTATCAAAAGGAGCACCAGATTTCTGTACAATTTACACTATTGCCAGCAAAGGCAAAGTTACAGTGAAACAATCCACGGCTCCGGCTCCAGTGAAGCCCGTTGCTTCACCATGCACCCAGCCACAACCTCCCCCGCCACGCCCTCAGCTACTACATCAGCTCACAAACACCTCCGAAGTTGTGTCGTTGGAGACAAACCAGTCACACACTCAATCAGCTAAATGTTTAGAGACCCAAACTAGCATAAAAAAGGTTCCTCCTCGTTCCTTCCAAGAAGATTGGGAAATCAAGTCACCGTTTACAAGGCCAGGTTCAAGGGCCTCAATGAGCAAATTGATCGATCCATTCACGGCAGATTCGGACATATCCTTCGTTAGCAGCGGGAGGCGGAGCATAGATCATTGCTTCCCAGGGGCATGGAACTCCAACGCCGCCACCGGCAGTGACTCCTCTCTCCTTTCTAACGCCTCTGAGTTTGAAGTTTTCAGCCCAGGGTCAACGTCGCTAATGCTGGAAATGGGAGAACGAACCAACAAATATGTTGATAGTAGTACTAATGATCATTATAACAACACCTCTTCTTTCCATCAGGATATGTCTTTTTGCTCTTCACCAAGTGAAACCTTCTCTTGGCCTTCTAATTCTCATGCTCAGGATGATGTTGAAGCTGAGATGAGAAGGTTGAAATTGGAGCTCAAACAAACTATGGACATGTATAGTACTGCCTGCAAAGAAGCCCTAACCGCCAAACAAAAGGCAATGGAGCTCCATCGCTGGAAAGTTGAAGAAGAGCAGAGGTTCGAAGCGGCGAGAATGGGGGAGGAAGCAGCATTAGCAATGGCAGAGAAGGAGAAGATAAAATGTAAAGCAGCGATGGAGGCAGCAGAAGCCGCACAAAAGAACGCAGCGCTCGAGGCTAAGAGAAGAGCCAAGGTAGAGAAAATGGTGGACATGGAAGCACAAGAAATGAGACGAACACTGTCATTTTCAGGATACGGTCATGCTGAAATCGGTTACAGAAAGTACGAAATCCAAGAAATCGAGACCGCCACAAAAGGCTTCTCCGAATCTTTGAAGATCGGTGAAGGCGGTTACGGTCCAGTCTTCCGTGGAGAACTCGACCACACGCCGGTGGCGATCAAGGTTCTTCGACCGGATGCCGCTCATGGACGATCTCAATTTCAACAAGAGGTTGAAGTTCTAAGTTGTATTCGACATCCAAACATGGTTCTCCTTCTCGGAGCTTGTCCTGAAAAGGGTTGTTTAGTTTACGAATTCATGGCGAATGGAAGCTTAGAAGATTGTCTCTTCCGAAAAGCGAACGACCCCATTCTTTCATGGCAATTACGATTCCGAATCGCAGCAGAGATCGCAACCGGACTTCTCTTCCTGCATCAAACCAGACCAGAACCGATCGTACACCGTGATCTGAAACCCGGTAACATTTTACTAGATAGTAACTACGTAAGCAAAATCAGCGACGTCGGACTGGCGAGGCTAGTTCCTCCTTCAGTAGCCGACTCAGTGACTCAGTATCGGATGACAGCAACGGCAGGGACATTCTTCTACATCGATCCTGAGTATCAACAAACAGGATTACTCGGGATTAAATCAGACGTTTACTCACTGGGAGTGATGCTTCTGCAGATAATCACAGCAAGACCGCCGATCGGACTGGCGCACGCAGTGGAAAGGGCGATTGAGAAGGGGAAATTTGCAGAGATGCTAGATCCAGAAGTGAAAGATTGGCCGGTTGAAGACGCGTTGAAGTTTGCAAAGCTTTCGATTAAGTGTGCAGAGATGAGGAAGAGAGATCGGCCAGACCTTGGGAAGGTGGTGCTGCCAGAGCTGAATCGATTGAGAACAATGGCGGAAGAGAGTATGGGACTTGGGTCGTTCAGCTGCAGTAGTACATGTTCATCCCCATATGCAAGCCAGACTTCTCAGGAAATGATGAATAGTGTACAAAGACGGGTAGGAGCATGGATTGATACCTCAAGCAGCCAATCAGATAGCAGCAGCTCATCATATTCTAGGGAAAAACCTTATTGGCTGGACTAG 2493 46.65 MAKGGAQKKDVAVAIDKDKCSQYALKWAIERLLSRGQVVTLLHVKQKPSSSAAHSITSLSADSDVDEAALNRQQIENHARDQFFLPFRCICTRNNIACNEVMLEEGEIPKTLTNYVTKNVVDILVLGAPTRSIYKRFKSDVPSTVSKGAPDFCTIYTIASKGKVTVKQSTAPAPVKPVASPCTQPQPPPPRPQLLHQLTNTSEVVSLETNQSHTQSAKCLETQTSIKKVPPRSFQEDWEIKSPFTRPGSRASMSKLIDPFTADSDISFVSSGRRSIDHCFPGAWNSNAATGSDSSLLSNASEFEVFSPGSTSLMLEMGERTNKYVDSSTNDHYNNTSSFHQDMSFCSSPSETFSWPSNSHAQDDVEAEMRRLKLELKQTMDMYSTACKEALTAKQKAMELHRWKVEEEQRFEAARMGEEAALAMAEKEKIKCKAAMEAAEAAQKNAALEAKRRAKVEKMVDMEAQEMRRTLSFSGYGHAEIGYRKYEIQEIETATKGFSESLKIGEGGYGPVFRGELDHTPVAIKVLRPDAAHGRSQFQQEVEVLSCIRHPNMVLLLGACPEKGCLVYEFMANGSLEDCLFRKANDPILSWQLRFRIAAEIATGLLFLHQTRPEPIVHRDLKPGNILLDSNYVSKISDVGLARLVPPSVADSVTQYRMTATAGTFFYIDPEYQQTGLLGIKSDVYSLGVMLLQIITARPPIGLAHAVERAIEKGKFAEMLDPEVKDWPVEDALKFAKLSIKCAEMRKRDRPDLGKVVLPELNRLRTMAEESMGLGSFSCSSTCSSPYASQTSQEMMNSVQRRVGAWIDTSSSQSDSSSSSYSREKPYWLD* 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5664089 5668825 - CsaV3_2G009160.1 Csa02g00700 518757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00700 830 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 9 137 - -
Csa02g00700 830 Gene3D Transferase(Phosphotransferase) domain 1 571 774 - -
Csa02g00700 830 SUPERFAMILY Protein kinase-like (PK-like) 476 757 IPR011009 -
Csa02g00700 830 MobiDBLite consensus disorder prediction 172 192 - -
Csa02g00700 830 PANTHER OS02G0152300 PROTEIN 7 796 - -
Csa02g00700 830 SMART serkin_6 498 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00700 830 MobiDBLite consensus disorder prediction 807 824 - -
Csa02g00700 830 Coils Coil 422 465 - -
Csa02g00700 830 Gene3D HUPs 9 158 IPR014729 -
Csa02g00700 830 Gene3D Phosphorylase Kinase; domain 1 478 570 - -
Csa02g00700 830 MobiDBLite consensus disorder prediction 807 830 - -
Csa02g00700 830 Coils Coil 362 382 - -
Csa02g00700 830 MobiDBLite consensus disorder prediction 178 192 - -
Csa02g00700 830 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 7 796 - -
Csa02g00700 830 Pfam Protein tyrosine and serine/threonine kinase 503 756 IPR001245 GO:0004672|GO:0006468
Csa02g00700 830 CDD STK_N 11 162 - -
Csa02g00700 830 ProSiteProfiles Protein kinase domain profile. 498 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00700 830 Pfam Universal stress protein family 10 137 IPR006016 -
Csa02g00700 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00700 Csa-Chr2:5664089 Csa02g02310 Csa-Chr2:20598002 0 dispersed
Csa06g02165 Csa-Chr6:19370774 Csa02g00700 Csa-Chr2:5664089 2.73E-07 dispersed
Csa02g00700 Csa-Chr2:5664089 Csa03g04417 Csa-Chr3:38540278 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77882 PF07714 PK_Tyr_Ser-Thr 8.20E-38 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00700 - - csv:101203771 1524.22