Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00702 ATGGAAGCCAGCGCTGGACTTGTCGCTGGGTCTCATAATCGTAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCGAAACCATTGAAGAATTTGGATGGTCAAGTTTGTGAGATCTGTGGTGATGCAGTGGGGCTTACTGTGGATGGTGATCTGTTTGTTGCCTGCAATGAATGTGGTTTTCCAGTTTGCAGACCTTGCTATGAGTATGAAAGAAGAGAAGGAAGCCAAAATTGTCCTCAGTGTAAAACTAGATATAAGAGACTCAAAGGGAGTCCAAGGGTTGAGGGAGATGACGATGAAGAAGACATAGATGACATTGAACATGAGTTCAACATGGATGATGAGAGGAACAACCATAGTCATCTGGCAGAAGCTATGCTCCATGGCAAGATGAGCTATGGTAGAGGCCCAGATGACGAAGAAAACGCACAGTATGGAAGATCACAGACAGTAAATGGTGAGCTTCCTTTATCTTCTCAAGGTTACGGAGAGCAGATGTTATCTTCTTCATTGCACAAACGTGTACATCCATACCCAGTTTCTGAACCCGGGAGTCAAAGATGGGATGAAAAGAGAGAGGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTACAGCAAGGGAATCTTGGGCCTGAACCTGATGATGGCTATGACCCTGACATGGCTATGATTGATGCAGCCAGACAACCACTATCAAGGAAGGTACCAATAGCATCGAGCAAAATTAATCCATACCGGATGGTTATTGTAGCCCGGCTCGTTATCCTTGCTTTCTTCCTTCGATACCGGATTCTAAATCCAGTGCATGATGCATTGGGTTTGTGGCTAACTTCTGTGATATGTGAAATCTGGTTTGCATTTTCATGGATTCTTGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACCTACTTGGATCGTCTATCCCTAAGGTATGAACGAGAGGGTGAACCTAATTTGCTTGCTCCAGTAGACATCTTCGTCAGTACTGTAGATCCGATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGATTATCCAGTTGATAAGATTTCATGTTACGTTTCGGATGATGGAGCTTCCATGCTTACTTTTGAAGCAATGTCTGAAACTGCAGAATTTGCAAGGAAATGGGTGCCTTTTTGTAAGAAGTTCTCCATAGAACCACGAGCACCTGAAATGTACTTCTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCAACATTTGTGAAGGAGCGTCGAGCAATGAAGAGAGAGTACGAAGAATTCAAGGTCAGAATAAATGCTCAAGTAGCGAAAGCCATGAAAATTCCCACAGAGGGATGGATAATGCAAGATGGAACACCATGGCCAGGCAACAATACAAAAGATCATCCTGGTATGATCCAAGTCTTTCTAGGTCACAGTGGAGGCCTTGATGCAGAAGGGAATGAACTCCCCCGCCTAGTTTATGTGTCTCGTGAGAAAAGACCAGGTTTCCAGCATCACAAGAAAGCCGGCGCCATGAATGCCTTGATTCGTGTCTCTGCAGTGCTTACAAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCGCGAGAGGCCATGTGTTTCCTTATGGACCCTCAAGTTGGAAAGAAAGTGTGCTATGTACAATTTCCACAAAGATTTGATGGAATAGATAGGCATGATCGTTATGCCAACAGAAACACAGTCTTCTTTGATATTAACATGCGAGGTTTAGATGGAATTCAGGGGCCTGTATATGTCGGCACAGGGTGTGTCTTTAGGAGGCAAGCTTTATATGGTTATGAACCCCCAAAAGGTCCTAAGCGCCCAAAAATGGTAAGCTGTGATTGTTGTCCATGCTTTGGACGTCGAAAGAAGCTCAAGAACTCCAAGAGTGGGGTGGATGGAGATGTTGCAGTACTGGCAGATGACAAGGAGCTACTGATGTCACAAATGAATTTCGAAAAGAAATTTGGACAGTCATCAATTTTTGTTACGTCTACTTTGATGGAAGAAGGTGGTGTTCCACCCTCCTCGAGTCCAGCAGCCCTGCTTAAGGAAGCAATTCATGTAATCAGTTGTGGTTATGAAGACAAAACCGAATGGGGTACAGAGTTGGGCTGGATTTACGGATCTATCACAGAAGATATTCTAACAGGCTTCAAAATGCACTGTCGTGGCTGGAGATCCATATACTGCATGCCAAAGAGACCTGCATTTAAGGGTACAGCTCCCATCAACTTGTCTGATCGGCTGAACCAGGTGCTTCGGTGGGCACTTGGGTCTATTGAAATCTTTTTCAGCAACCATTGCCCCGTTTGGTATGGCTACAAGGGCGGGAAGCTAAAGTGGCTTGAGAGATTTGCATATGTCAACACAACTGTCTACCCCTTCACTTCAATACCACTTCTCGCCTATTGTACCCTCCCTGCAATCTGCCTGCTCACGGATAAGTTTATCATGCCACCGATAAGCACCTTTGCAAGTCTCTTCTTCATTGCCTTGTTTCTTTCCATTTTTGCTACGGGAATTCTTGAGCTTAAATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAGTTTTGGGTCATTGGTGGTATTTCAGCTCATCTATTTGCTGTTATACAAGGTCTGTTGAAGGTATTGGCTGGAATTGATACTAGCTTTACAGTTACATCCAAGGCAACAGACGATGAAGACTTTGGAGAATTATATGCCTTCAAATGGACAACCCTGCTAATCCCTCCAACAACTATTTTGATCATCAACCTTGTAGGAGTTGTTGCAGGAATCTCAGATGCCATAAACAATGGGTATCAATCATGGGGACCTCTCTTTGGGAAACTTTTCTTTGCCTTCTGGGTGATTGTTCATCTTTACCCATTCCTCAAGGGTCTGATGGGCCGCCAAAACCGCACACCGACAATAGTTGTCATATGGTCTGTGCTGTTGGCTTCAATCTTCTCCTTGCTTTGGGTCCGAATTGATCCGTTTGTGATGAAAACAAAGGGACCGGATACCAAGAAATGTGGACTAAATTGCTGA 3099 44.01 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDAVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNMDDERNNHSHLAEAMLHGKMSYGRGPDDEENAQYGRSQTVNGELPLSSQGYGEQMLSSSLHKRVHPYPVSEPGSQRWDEKREEGWKDRMDDWKLQQGNLGPEPDDGYDPDMAMIDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAMKIPTEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKLKNSKSGVDGDVAVLADDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASLFFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVIQGLLKVLAGIDTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKKCGLNC* 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5678171 5683777 + CsaV3_2G009180.1 Csa02g00702 518759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00702 1032 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Csa02g00702 1032 SUPERFAMILY Nucleotide-diphospho-sugar transferases 340 856 IPR029044 -
Csa02g00702 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Csa02g00702 1032 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Csa02g00702 1032 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 432 618 IPR029044 -
Csa02g00702 1032 Pfam Cellulose synthase 327 1026 IPR005150 GO:0016020|GO:0016760|GO:0030244
Csa02g00702 1032 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Csa02g00702 1032 SUPERFAMILY RING/U-box 21 109 - -
Csa02g00702 1032 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1032 - -
Csa02g00702 1032 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1032 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00702 Csa-Chr2:5678171 Csa04g01082 Csa-Chr4:8832210 0 dispersed
Csa07g00220 Csa-Chr7:1747485 Csa02g00702 Csa-Chr2:5678171 0 dispersed
Csa07g00344 Csa-Chr7:2558300 Csa02g00702 Csa-Chr2:5678171 2.06E-100 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00702 K10999 - csv:101214842 2116.27