Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00709 ATGTTGGAGGGTGGTCAAAAATTCCCTGGAATGATCGATTTAAACGAGCATGCATATGATCTATCGCAAGGGTTTTACCATAAACTTGGTGAGGGAACCAACATGTCTATTGACAGCTTTGCAAGCTTGCAAACGAGCAACGATGGAGGGTCAGTTGCCATGTCTTTAGATAACAGCAGTGTAGGATCGAACGAGTCTCACACTCGGATCTTAAATCACCAAGGCTTGCGACGGCGTGCAAATGACAACCATACTTTTCAACATAGTGTTAACCGTCGTGGAAGAGTTACACATCACCTGAGTGATGATGCGCTAGCCCGAGCTTTATTTGATAGCAATACACCCACTCAGGGTCTTGAAAATTTTGAGAAGTGGACTCTTGATTTAAGAAAGCTTAATATGGGAGAGGCTTTTGCTCAAGGTGCCTTTGGGAAACTCTACAGAGGTACTTATGATGGTGAAGATGTTGCTATCAAGATCTTGGAGAGGCCAGAGAATGACCTGGAAAAGGCTCAGTTAATGGAGCAGCAATATCAACAGGAGGTGATGATGCTTGCTACTCTAAAGCACCCAAATATTGTCCGGTTTATTGGATCATGCCATAAGCCGATGGTTTGGTGCATTGTTACTGAGTATGCGAAGGGCGGTTCAGTTAGGCAGTTCTTGATGAGGCGACAAAGTCGTTCTGTCCCGCTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCCAGGGGGATGGAATATGTTCATGGCCTTGGGCTGATACACAGGGACTTGAAATCAGACAACCTTTTGATTTTTGCTGACAAGTCTATCAAAGTTGCTGACTTTGGAGTGGCCCGGATTGAGGTGCAGACAGAAGGAATGACACCTGAGACTGGAACCTATCGCTGGATGGCTCCGGAGATGATCCAACACAGGCCTTACACACAAAAGGTGGACCTGTATAGCTTTGGTATCGTTCTGTGGGAGCTCATAACTGGAATGCTTCCGTTCCAGAACATGACAGCTGTTCAGGCTGCCTTTGCAGTTGTAAACAAGGGAGTCCGTCCTATCATTCCCAATGATTGCTTGCCTGTTTTGAGCGACATCATGACCCGGTGCTGGGATCCCAATCCTGATGTTAGGCCATCATTCACCGAAGTCGTCAGAATGCTTGAGAATGCACAAACTGAGATCATGACGACGGTTCGTAAGGCTCGTTTCAGGTGTTGCATTACGCAGCCGATGACAACAGACTGA 1242 46.3 MLEGGQKFPGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNRRGRVTHHLSDDALARALFDSNTPTQGLENFEKWTLDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHPNIVRFIGSCHKPMVWCIVTEYAKGGSVRQFLMRRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDPNPDVRPSFTEVVRMLENAQTEIMTTVRKARFRCCITQPMTTD* 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5741381 5751149 - CsaV3_2G009250.1 Csa02g00709 518766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00709 413 SMART serkin_6 132 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00709 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Csa02g00709 413 SUPERFAMILY Protein kinase-like (PK-like) 117 386 IPR011009 -
Csa02g00709 413 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 2 404 - -
Csa02g00709 413 PRINTS Tyrosine kinase catalytic domain signature 210 223 IPR001245 GO:0004672|GO:0006468
Csa02g00709 413 PRINTS Tyrosine kinase catalytic domain signature 248 266 IPR001245 GO:0004672|GO:0006468
Csa02g00709 413 PRINTS Tyrosine kinase catalytic domain signature 294 304 IPR001245 GO:0004672|GO:0006468
Csa02g00709 413 PRINTS Tyrosine kinase catalytic domain signature 313 335 IPR001245 GO:0004672|GO:0006468
Csa02g00709 413 PRINTS Tyrosine kinase catalytic domain signature 357 379 IPR001245 GO:0004672|GO:0006468
Csa02g00709 413 PANTHER SERINE-THREONINE PROTEIN KINASE 2 404 - -
Csa02g00709 413 CDD STKc_MAP3K-like 139 386 - -
Csa02g00709 413 Gene3D Phosphorylase Kinase; domain 1 121 214 - -
Csa02g00709 413 ProSiteProfiles Protein kinase domain profile. 132 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00709 413 Pfam Protein tyrosine and serine/threonine kinase 133 386 IPR001245 GO:0004672|GO:0006468
Csa02g00709 413 Gene3D Transferase(Phosphotransferase) domain 1 215 408 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00709 Csa-Chr2:5741381 Csa06g03630 Csa-Chr6:29264801 9.87E-98 dispersed
Csa05g01889 Csa-Chr5:22098286 Csa02g00709 Csa-Chr2:5741381 8.13E-76 dispersed
Csa06g03403 Csa-Chr6:28184725 Csa02g00709 Csa-Chr2:5741381 7.14E-21 dispersed
Csa07g01691 Csa-Chr7:17390292 Csa02g00709 Csa-Chr2:5741381 5.60E-74 dispersed
Csa02g00709 Csa-Chr2:5741381 Csa01g00844 Csa-Chr1:5290383 5.15E-100 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77884 PF07714 PK_Tyr_Ser-Thr 6.70E-65 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00709 - - csv:101213713 839.336