Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g00714 | ATGGCTTCGAGTTCCTCGAATTCGCCCTGTGCAGCCTGCAAATTTCTCCGGCGAAAATGCCAGCCGGAATGTGTTTTTGCGCCGTATTTTCCACCGGATCAGCCTCAGAAATTCGCAAATGTTCACAAGGTATTCGGAGCTAGTAATGTAACAAAACTTCTCAACGAATTACATCCTCACCAGAGAGAAGACGCTGTCAATTCCCTCGCTTACGAAGCCGATATGCGCCTTCGTGACCCTGTCTACGGCTGTGTTGGCGTAATTTCTCTGCTTCAACACCAACTCTGTAAACTCCAAATGGATCTCACTTGCGCAAAATCTGAACTCTCCAAATATCAAAACTTAGGGATTGGTAACCACGCTACCCTGATTTCGCCGCCTTCCACCCTTTCTACCGTCCCTCATGGACAGAGAAACCACCAGCCGGCGTTCAATTTCGCTCGAGATCAACCGCATAGTCTTTATCACGACCAATTTTTCCCTCGAGATCAACAACAACCACAGATGATGCTACGACGGAACTTCGACGGCGGTAGCAACTACGACGGACTTTTGGCCGTTAATGTCACCGCAAGTATCGGTAACCTCAGCCACCAGTTCCAGCAAACTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG | 657 | 49.92 | MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHATLISPPSTLSTVPHGQRNHQPAFNFARDQPHSLYHDQFFPRDQQQPQMMLRRNFDGGSNYDGLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS* | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5807886 | 5809971 | + | CsaV3_2G009300.1 | Csa02g00714 | 518771 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g00714 | 218 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 6-LIKE | 3 | 183 | - | - | |
Csa02g00714 | 218 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 3 | 183 | - | - | |
Csa02g00714 | 218 | Pfam | Lateral organ boundaries (LOB) domain | 9 | 106 | IPR004883 | - | |
Csa02g00714 | 218 | ProSiteProfiles | LOB domain profile. | 8 | 109 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00875 | Csa-Chr1:5466501 | Csa02g00714 | Csa-Chr2:5807886 | 2.66E-53 | dispersed | |
Csa02g00714 | Csa-Chr2:5807886 | Csa02g01532 | Csa-Chr2:14567747 | 5.72E-60 | dispersed | |
Csa07g02387 | Csa-Chr7:21984527 | Csa02g00714 | Csa-Chr2:5807886 | 2.37E-29 | dispersed | |
Csa02g00714 | Csa-Chr2:5807886 | Csa01g00123 | Csa-Chr1:692578 | 9.04E-62 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30885 | PF03195 | LOB | 4.20E-43 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g00714 | - | - | csv:101203281 | 439.113 |