Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00714 ATGGCTTCGAGTTCCTCGAATTCGCCCTGTGCAGCCTGCAAATTTCTCCGGCGAAAATGCCAGCCGGAATGTGTTTTTGCGCCGTATTTTCCACCGGATCAGCCTCAGAAATTCGCAAATGTTCACAAGGTATTCGGAGCTAGTAATGTAACAAAACTTCTCAACGAATTACATCCTCACCAGAGAGAAGACGCTGTCAATTCCCTCGCTTACGAAGCCGATATGCGCCTTCGTGACCCTGTCTACGGCTGTGTTGGCGTAATTTCTCTGCTTCAACACCAACTCTGTAAACTCCAAATGGATCTCACTTGCGCAAAATCTGAACTCTCCAAATATCAAAACTTAGGGATTGGTAACCACGCTACCCTGATTTCGCCGCCTTCCACCCTTTCTACCGTCCCTCATGGACAGAGAAACCACCAGCCGGCGTTCAATTTCGCTCGAGATCAACCGCATAGTCTTTATCACGACCAATTTTTCCCTCGAGATCAACAACAACCACAGATGATGCTACGACGGAACTTCGACGGCGGTAGCAACTACGACGGACTTTTGGCCGTTAATGTCACCGCAAGTATCGGTAACCTCAGCCACCAGTTCCAGCAAACTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG 657 49.92 MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHATLISPPSTLSTVPHGQRNHQPAFNFARDQPHSLYHDQFFPRDQQQPQMMLRRNFDGGSNYDGLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS* 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5807886 5809971 + CsaV3_2G009300.1 Csa02g00714 518771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00714 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 3 183 - -
Csa02g00714 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 183 - -
Csa02g00714 218 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Csa02g00714 218 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00875 Csa-Chr1:5466501 Csa02g00714 Csa-Chr2:5807886 2.66E-53 dispersed
Csa02g00714 Csa-Chr2:5807886 Csa02g01532 Csa-Chr2:14567747 5.72E-60 dispersed
Csa07g02387 Csa-Chr7:21984527 Csa02g00714 Csa-Chr2:5807886 2.37E-29 dispersed
Csa02g00714 Csa-Chr2:5807886 Csa01g00123 Csa-Chr1:692578 9.04E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30885 PF03195 LOB 4.20E-43 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00714 - - csv:101203281 439.113