Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00757 ATGGGGACAGAGCTTATAAGAGTTTGTGTTGAAGATGATAGTGATGACTTTCCATCGGTTCCACCAGGTTTTGAGTCATATATATCTTTTTCTCTTGGGAAGGTGCACAATCTTGAAAAACAAGACATTCATGCCCCCCCTGTTAGTTTGCCAACTGTCTCCGAACCACAACCAGCTAAAGTGGGAAGTGAGGTAGAAGTTCCCAAGGTTGCAAAAGTTACAAGGTCCCTCCGGCGTAAACCATGTATAAACTATAAACAATATGATTACTGCTCTGATGACGAGATTAATAGTACTAATTGTCTAGATCAGAATTCTTCTTCAAGGCCTTCTCTTTCAAAGGGAGTCATCCGTGGATGTCCACAATGTAATAATTGTCAAAAGGTGGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCAAACCTTGAGAATGCACCTGTGTTTTACCCAACCGAAGAGGAATTTGGAGATACTTTGACATATATTGCCAGCATACGGGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTTCCGCCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGGGTTCTAAATTTGTAACTCGTGTCCAAAGAATTGATAAGCTCCAAAACCGAGAGTCAATAAGAAAGAACTCTAGGATTTGCGGTCAGATGAGAAGGAAAAGGAGGAGGTGTAATCGAAAGGGGGTTGATGTTACCACCTTAAATGGAAAAATTGCAGATGCTGGCTCTGTTGAGGCCGAGAGATTTGGATTTGATCCTGGTCCTGATTTTACCTTGGCAATGTTTCAAAAATACGCAGATGACTTTAAGTCTCAATATTTTAGTAAGCCACTCATCGATACTGCGAAGGGTTGTAACCCTTCCATGCTGCAAGACAATGAAAATTGGAAACCTTCTTTGGAAGCTATTGAGGGTGAATACTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTTCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGTAGTGGTTTTCCAAAGATTAGCTGTCAAGAGGGCTCTACATTAGATGAAGAAAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGCTCTGTACTTAGCTATGAGAGCAGTAATATATCTGGAGTCTTGGTACCATGGCTGTATATTGGGATGTGCTTTTCGTCTTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCTGGGAAATTAGAGGAGGCTATGAGAAAGCATTTACCTAACCTCTTTCAAGAACAACCAGATTTACTCCATAAACTGGTTACGCAACTTTCTCCATCCATATTGAAAAGTGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTTAATTGTGCTGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGTGAACAGGGACGAAGAACTACTATTTCCCATGATAAGCTATTGCTTGGTGCTGCTCGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTCAAAAAGAATACTTTGGATAACTTAAGATGGAATAGTGTCTGCGGAAAAGATGGAATCTTAGCAAGAGCATTCAAGACTCGTGTTGAGATGGAACGTGCAAGGAGGAACCTTCCTTGCAGTTCTTCCCAGGCAATGAAGATGGAGAGCAACTTTGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGATTTGCATCTGTCTGCAGTTGGGTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCCAAGCAGTTGTGTTCTTGTGCTTGGGAAGAGAGAATTTTTCTCTTTCGCTATGACATAAGTGAATTGAACATACTTCTTGAAGCATTGGAAGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTTGGTCTGGCGCTTAGTACATCTAGGGAGTTGAGTTTTCAATCATCAACAAAATCCCATGGGAATCCTCAATGGAAAGAATTATTGAGGCAATCTTCGTTATTACCAACACTAACTGCTTTAAACAGTTCTCATCATGCCCAAAAGTTATCTGAAGTTACTACCTCTTTTTTAGAAGTTAAGAAGGAAATTTCCACAGTTAATGGATCTGAGAAGGAAATTGGGCAGCAAAATCATAAAATAGAGGTGAAAAAAGAAAGCCATGACCTTGTGGCAACCAATTCAAAACATGCAGATTCACAGTCCTGTAAGGAAGATACAAATGCTCTGAATAAGATAGAAGTGAAAAGTACAACGGATAAAATGTGTCCTGAAAATGTCATACTATTAAGTGATGATGAAGGTGATGACCATAAGAAGACAATTTCAAATGGTTTAGCTGAAAGTTCATCAGTAAAGCAGCTGGGAAATTCAGATCGATTCACTGAGATTGATTCTAAGGCTAGCCTGTGCAACTACAATGAAAATGCCATTTTGCACACTCCGGCGACTGATGCAACGACCATGGGAGACAAGGAGGTCAACTTGTTGATTGAAAAAAGATTGAATAATTGTCAATCGAGGATTGTACCTTTATATAGTAAAAAGTCTCAAAACAGTAACCTCTCTGTTAGAAATGCAGCTAATGCTATTCAGAACAACACATGTTCAGATTCGGGATTAGGTCATAGTAATAGAGAATTTCTAGAGTCAACAGACACTGATTGTCAAAAACCACAGACATGTGGCTCTGGAAAACTGAATGAGGGTACTCATGGAAATGCAGGAATGAGTGCTACATCTTGTGTGTTAGACTCTAGTAGAACTACTGCAAATTTATCTTGCAACCAAGCTAATATGGATAGATTCATGAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGAAGGATTAACTGCAATGTTGAGCCTTTAGAATATGGAATTGTGCTCTCAGGGAAGTCTTGGTCAAACAGTCAGGCCATTTTTCCTAAAGGATTTAAGAGCAAGGTCAAGTTTATAAATGTTTTAGATCCGTCAACTTTGTGCTACTATGTTTCTGAAATTCTCGATGCTGGACGGGATGGGCCTCTTTTCATGGTTGTTTTGGAGCATTGTTCTAGTGAGGTATTCGTTCATGTTTCTGCTACCAGATGTTGGGAGTTGGTTAGAGAACGAGTCAATCAAGAAATTGCAAAGCAACATAAGTTGGGTAGAACAAACCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGGTTAGAAATGTTTGGATTTACTTCACCGGCAATTGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTGGTGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCAAGTACATAGTCCCCAACTGTCTCAATCAACAGAAATTAGTCGTAACATGCAAACAACTGAAAGGAATGGGATTGATCCTAGGCCAGCTGGAGTTGATATAGTACTTAGGGGATTGTTGAAGAAGGCAAACCTAGAAGAACTAAGCTCACTCTATACTCTTTTAAATGATAATAGGCCAACAGTTGATCAAGGCGTGTTAGCTCGACTTCTTAACGAAGAGATTCAAAGTCATCGAAGATGA 3708 41.21 MGTELIRVCVEDDSDDFPSVPPGFESYISFSLGKVHNLEKQDIHAPPVSLPTVSEPQPAKVGSEVEVPKVAKVTRSLRRKPCINYKQYDYCSDDEINSTNCLDQNSSSRPSLSKGVIRGCPQCNNCQKVVARWRPEESCRPNLENAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWEGSKFVTRVQRIDKLQNRESIRKNSRICGQMRRKRRRCNRKGVDVTTLNGKIADAGSVEAERFGFDPGPDFTLAMFQKYADDFKSQYFSKPLIDTAKGCNPSMLQDNENWKPSLEAIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKISCQEGSTLDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPNLFQEQPDLLHKLVTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLDNLRWNSVCGKDGILARAFKTRVEMERARRNLPCSSSQAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERIFLFRYDISELNILLEALEGKLSAVYRWARQDLGLALSTSRELSFQSSTKSHGNPQWKELLRQSSLLPTLTALNSSHHAQKLSEVTTSFLEVKKEISTVNGSEKEIGQQNHKIEVKKESHDLVATNSKHADSQSCKEDTNALNKIEVKSTTDKMCPENVILLSDDEGDDHKKTISNGLAESSSVKQLGNSDRFTEIDSKASLCNYNENAILHTPATDATTMGDKEVNLLIEKRLNNCQSRIVPLYSKKSQNSNLSVRNAANAIQNNTCSDSGLGHSNREFLESTDTDCQKPQTCGSGKLNEGTHGNAGMSATSCVLDSSRTTANLSCNQANMDRFMRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSNSQAIFPKGFKSKVKFINVLDPSTLCYYVSEILDAGRDGPLFMVVLEHCSSEVFVHVSATRCWELVRERVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAMDRNRVCGEYWDSRPYSRPQVHSPQLSQSTEISRNMQTTERNGIDPRPAGVDIVLRGLLKKANLEELSSLYTLLNDNRPTVDQGVLARLLNEEIQSHRR* 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6267469 6278145 - CsaV3_2G009730.1 Csa02g00757 518814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00757 1235 ProSiteProfiles JmjN domain profile. 146 187 IPR003349 -
Csa02g00757 1235 PANTHER LYSINE-SPECIFIC DEMETHYLASE 79 780 - -
Csa02g00757 1235 PANTHER LYSINE-SPECIFIC DEMETHYLASE 791 1232 - -
Csa02g00757 1235 Pfam jmjN domain 147 180 IPR003349 -
Csa02g00757 1235 Pfam C5HC2 zinc finger 616 666 IPR004198 -
Csa02g00757 1235 Pfam F/Y rich C-terminus 1062 1146 IPR003889 GO:0005634
Csa02g00757 1235 Gene3D - 1008 1144 - -
Csa02g00757 1235 ProSiteProfiles JmjC domain profile. 360 526 IPR003347 -
Csa02g00757 1235 SMART fyrc_3 1064 1158 IPR003889 GO:0005634
Csa02g00757 1235 ProSiteProfiles FYR domain FYRC motif profile. 1060 1150 IPR003889 GO:0005634
Csa02g00757 1235 Pfam F/Y-rich N-terminus 1015 1055 IPR003888 GO:0005634
Csa02g00757 1235 ProSiteProfiles FYR domain FYRN motif profile. 1000 1058 IPR003888 GO:0005634
Csa02g00757 1235 SMART cupin_9 360 526 IPR003347 -
Csa02g00757 1235 Pfam JmjC domain, hydroxylase 393 509 IPR003347 -
Csa02g00757 1235 Gene3D Cupin 131 510 - -
Csa02g00757 1235 PANTHER JUMONJI 14-RELATED 791 1232 - -
Csa02g00757 1235 PANTHER JUMONJI 14-RELATED 79 780 - -
Csa02g00757 1235 SMART JmjN_1 145 186 IPR003349 -
Csa02g00757 1235 SUPERFAMILY Clavaminate synthase-like 361 553 - -
Csa02g00757 1235 SMART fyrn_3 1014 1058 IPR003888 GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02670 Csa-Chr1:23723039 Csa02g00757 Csa-Chr2:6267469 7.33E-40 dispersed
Csa02g00757 Csa-Chr2:6267469 Csa07g01613 Csa-Chr7:16647690 0 dispersed
Csa02g00757 Csa-Chr2:6267469 Csa03g00140 Csa-Chr3:1095869 1.24E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30886 PF02373 JmjC 6.70E-45 CL0029 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00757 - - csv:101208186 2517.65