Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00757 ATGGGGACAGAGCTTATAAGAGTTTGTGTTGAAGATGATAGTGATGACTTTCCATCGGTTCCACCAGGTTTTGAGTCATATATATCTTTTTCTCTTGGGAAGGTGCACAATCTTGAAAAACAAGACATTCATGCCCCCCCTGTTAGTTTGCCAACTGTCTCCGAACCACAACCAGCTAAAGTGGGAAGTGAGGTAGAAGTTCCCAAGGTTGCAAAAGTTACAAGGTCCCTCCGGCGTAAACCATGTATAAACTATAAACAATATGATTACTGCTCTGATGACGAGATTAATAGTACTAATTGTCTAGATCAGAATTCTTCTTCAAGGCCTTCTCTTTCAAAGGGAGTCATCCGTGGATGTCCACAATGTAATAATTGTCAAAAGGTGGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCAAACCTTGAGAATGCACCTGTGTTTTACCCAACCGAAGAGGAATTTGGAGATACTTTGACATATATTGCCAGCATACGGGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTTCCGCCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGGGTTCTAAATTTGTAACTCGTGTCCAAAGAATTGATAAGCTCCAAAACCGAGAGTCAATAAGAAAGAACTCTAGGATTTGCGGTCAGATGAGAAGGAAAAGGAGGAGGTGTAATCGAAAGGGGGTTGATGTTACCACCTTAAATGGAAAAATTGCAGATGCTGGCTCTGTTGAGGCCGAGAGATTTGGATTTGATCCTGGTCCTGATTTTACCTTGGCAATGTTTCAAAAATACGCAGATGACTTTAAGTCTCAATATTTTAGTAAGCCACTCATCGATACTGCGAAGGGTTGTAACCCTTCCATGCTGCAAGACAATGAAAATTGGAAACCTTCTTTGGAAGCTATTGAGGGTGAATACTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTTCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGTAGTGGTTTTCCAAAGATTAGCTGTCAAGAGGGCTCTACATTAGATGAAGAAAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGCTCTGTACTTAGCTATGAGAGCAGTAATATATCTGGAGTCTTGGTACCATGGCTGTATATTGGGATGTGCTTTTCGTCTTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCTGGGAAATTAGAGGAGGCTATGAGAAAGCATTTACCTAACCTCTTTCAAGAACAACCAGATTTACTCCATAAACTGGTTACGCAACTTTCTCCATCCATATTGAAAAGTGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTTAATTGTGCTGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGTGAACAGGGACGAAGAACTACTATTTCCCATGATAAGCTATTGCTTGGTGCTGCTCGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTCAAAAAGAATACTTTGGATAACTTAAGATGGAATAGTGTCTGCGGAAAAGATGGAATCTTAGCAAGAGCATTCAAGACTCGTGTTGAGATGGAACGTGCAAGGAGGAACCTTCCTTGCAGTTCTTCCCAGGCAATGAAGATGGAGAGCAACTTTGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGATTTGCATCTGTCTGCAGTTGGGTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCCAAGCAGTTGTGTTCTTGTGCTTGGGAAGAGAGAATTTTTCTCTTTCGCTATGACATAAGTGAATTGAACATACTTCTTGAAGCATTGGAAGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTTGGTCTGGCGCTTAGTACATCTAGGGAGTTGAGTTTTCAATCATCAACAAAATCCCATGGGAATCCTCAATGGAAAGAATTATTGAGGCAATCTTCGTTATTACCAACACTAACTGCTTTAAACAGTTCTCATCATGCCCAAAAGTTATCTGAAGTTACTACCTCTTTTTTAGAAGTTAAGAAGGAAATTTCCACAGTTAATGGATCTGAGAAGGAAATTGGGCAGCAAAATCATAAAATAGAGGTGAAAAAAGAAAGCCATGACCTTGTGGCAACCAATTCAAAACATGCAGATTCACAGTCCTGTAAGGAAGATACAAATGCTCTGAATAAGATAGAAGTGAAAAGTACAACGGATAAAATGTGTCCTGAAAATGTCATACTATTAAGTGATGATGAAGGTGATGACCATAAGAAGACAATTTCAAATGGTTTAGCTGAAAGTTCATCAGTAAAGCAGCTGGGAAATTCAGATCGATTCACTGAGATTGATTCTAAGGCTAGCCTGTGCAACTACAATGAAAATGCCATTTTGCACACTCCGGCGACTGATGCAACGACCATGGGAGACAAGGAGGTCAACTTGTTGATTGAAAAAAGATTGAATAATTGTCAATCGAGGATTGTACCTTTATATAGTAAAAAGTCTCAAAACAGTAACCTCTCTGTTAGAAATGCAGCTAATGCTATTCAGAACAACACATGTTCAGATTCGGGATTAGGTCATAGTAATAGAGAATTTCTAGAGTCAACAGACACTGATTGTCAAAAACCACAGACATGTGGCTCTGGAAAACTGAATGAGGGTACTCATGGAAATGCAGGAATGAGTGCTACATCTTGTGTGTTAGACTCTAGTAGAACTACTGCAAATTTATCTTGCAACCAAGCTAATATGGATAGATTCATGAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGAAGGATTAACTGCAATGTTGAGCCTTTAGAATATGGAATTGTGCTCTCAGGGAAGTCTTGGTCAAACAGTCAGGCCATTTTTCCTAAAGGATTTAAGAGCAAGGTCAAGTTTATAAATGTTTTAGATCCGTCAACTTTGTGCTACTATGTTTCTGAAATTCTCGATGCTGGACGGGATGGGCCTCTTTTCATGGTTGTTTTGGAGCATTGTTCTAGTGAGGTATTCGTTCATGTTTCTGCTACCAGATGTTGGGAGTTGGTTAGAGAACGAGTCAATCAAGAAATTGCAAAGCAACATAAGTTGGGTAGAACAAACCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGGTTAGAAATGTTTGGATTTACTTCACCGGCAATTGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTGGTGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCAAGTACATAGTCCCCAACTGTCTCAATCAACAGAAATTAGTCGTAACATGCAAACAACTGAAAGGAATGGGATTGATCCTAGGCCAGCTGGAGTTGATATAGTACTTAGGGGATTGTTGAAGAAGGCAAACCTAGAAGAACTAAGCTCACTCTATACTCTTTTAAATGATAATAGGCCAACAGTTGATCAAGGCGTGTTAGCTCGACTTCTTAACGAAGAGATTCAAAGTCATCGAAGATGA 3708 41.21 MGTELIRVCVEDDSDDFPSVPPGFESYISFSLGKVHNLEKQDIHAPPVSLPTVSEPQPAKVGSEVEVPKVAKVTRSLRRKPCINYKQYDYCSDDEINSTNCLDQNSSSRPSLSKGVIRGCPQCNNCQKVVARWRPEESCRPNLENAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWEGSKFVTRVQRIDKLQNRESIRKNSRICGQMRRKRRRCNRKGVDVTTLNGKIADAGSVEAERFGFDPGPDFTLAMFQKYADDFKSQYFSKPLIDTAKGCNPSMLQDNENWKPSLEAIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKISCQEGSTLDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPNLFQEQPDLLHKLVTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLDNLRWNSVCGKDGILARAFKTRVEMERARRNLPCSSSQAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERIFLFRYDISELNILLEALEGKLSAVYRWARQDLGLALSTSRELSFQSSTKSHGNPQWKELLRQSSLLPTLTALNSSHHAQKLSEVTTSFLEVKKEISTVNGSEKEIGQQNHKIEVKKESHDLVATNSKHADSQSCKEDTNALNKIEVKSTTDKMCPENVILLSDDEGDDHKKTISNGLAESSSVKQLGNSDRFTEIDSKASLCNYNENAILHTPATDATTMGDKEVNLLIEKRLNNCQSRIVPLYSKKSQNSNLSVRNAANAIQNNTCSDSGLGHSNREFLESTDTDCQKPQTCGSGKLNEGTHGNAGMSATSCVLDSSRTTANLSCNQANMDRFMRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSNSQAIFPKGFKSKVKFINVLDPSTLCYYVSEILDAGRDGPLFMVVLEHCSSEVFVHVSATRCWELVRERVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAMDRNRVCGEYWDSRPYSRPQVHSPQLSQSTEISRNMQTTERNGIDPRPAGVDIVLRGLLKKANLEELSSLYTLLNDNRPTVDQGVLARLLNEEIQSHRR* 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6267469 6278145 - CsaV3_2G009730.1 Csa02g00757 518814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00757 1235 ProSiteProfiles JmjN domain profile. 146 187 IPR003349 -
Csa02g00757 1235 PANTHER LYSINE-SPECIFIC DEMETHYLASE 79 780 - -
Csa02g00757 1235 PANTHER LYSINE-SPECIFIC DEMETHYLASE 791 1232 - -
Csa02g00757 1235 Pfam jmjN domain 147 180 IPR003349 -
Csa02g00757 1235 Pfam C5HC2 zinc finger 616 666 IPR004198 -
Csa02g00757 1235 Pfam F/Y rich C-terminus 1062 1146 IPR003889 GO:0005634
Csa02g00757 1235 Gene3D - 1008 1144 - -
Csa02g00757 1235 ProSiteProfiles JmjC domain profile. 360 526 IPR003347 -
Csa02g00757 1235 SMART fyrc_3 1064 1158 IPR003889 GO:0005634
Csa02g00757 1235 ProSiteProfiles FYR domain FYRC motif profile. 1060 1150 IPR003889 GO:0005634
Csa02g00757 1235 Pfam F/Y-rich N-terminus 1015 1055 IPR003888 GO:0005634
Csa02g00757 1235 ProSiteProfiles FYR domain FYRN motif profile. 1000 1058 IPR003888 GO:0005634
Csa02g00757 1235 SMART cupin_9 360 526 IPR003347 -
Csa02g00757 1235 Pfam JmjC domain, hydroxylase 393 509 IPR003347 -
Csa02g00757 1235 Gene3D Cupin 131 510 - -
Csa02g00757 1235 PANTHER JUMONJI 14-RELATED 791 1232 - -
Csa02g00757 1235 PANTHER JUMONJI 14-RELATED 79 780 - -
Csa02g00757 1235 SMART JmjN_1 145 186 IPR003349 -
Csa02g00757 1235 SUPERFAMILY Clavaminate synthase-like 361 553 - -
Csa02g00757 1235 SMART fyrn_3 1014 1058 IPR003888 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00757 - - - csv:101208186 2517.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02670 Csa-Chr1:23723039 Csa02g00757 Csa-Chr2:6267469 7.33E-40 dispersed
Csa02g00757 Csa-Chr2:6267469 Csa07g01613 Csa-Chr7:16647690 0 dispersed
Csa02g00757 Csa-Chr2:6267469 Csa03g00140 Csa-Chr3:1095869 1.24E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g610 Blo10g00272 Blo11g00440 . . . Bpe09g00662 Bma13g00412 . . . . Cma12g00959 . Car12g00919 . Cpe07g00798 . . . . . . . . . . . . . . . Cone10ag0643 Cone3ag0673 . . . Csa02g00757 . Cme05g01133 . . . . . . . . . Cmo05g00802 Cmo12g00962 . . . . . . Bhi06g01091 . . . . . . Cla11g01036 Cam11g1090 . Cco11g1094 Clacu11g1252 Cmu11g1088 Cre11g1512 . . Chy05g00772 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g00757 . 1 1234 JUMONJI Transcription Factor Family AT1G08620 54.8 0.0e+00 1265.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30886 PF02373 JmjC 6.70E-45 CL0029 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00757 Csa_Chr02 FPKM 5.313725 5.120999 1.436421 1.63103 5.461733 5.223025 5.013444 0.0 0.0 0.198671