Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00788 ATGGGAGAGATTGACACTCCTATAAGACTCAACCAAACCATTCACACACACAATCCTTCTATAAACCTCAACCAAACATTCACACACACACACACTTTTTCTAAAGCTCTCACCATGGCCACTCTTTCTTGCCAACCTTCCGATTTGATTCCCCTTCTCGGCTCTTCAGCCACCACGAACTCCACCGCGGTAGCCGAGTTTCTATGCTCCAGATTCACCACAATAGCCTCCACTTTCAGCTCCACCACCTATGCCGTCGACAACAACTACCTTCTCTTTTCCGCCTACCTCGTCTTTGCCATGCAGCTTGGCTTTGCCATGCTTTGTGCCGGCTCCGTCCGGGCCAAAAACACCATGAACATCATGCTCACCAATGTCCTTGATGCTGCTGCCGGAGGCCTCTCCTACTACCTCTTCGGTTTCGCCTTTGCCTTCGGTGCTCCCTCCAACTCCTTCATCGGCCGCCATTTTTTTGACCTCTCCAGTGTCCCTAACCCCTCTACTGACTATAGCTTTTTTCTCTATCAATGGGCCTTTGCTATTGCTACTGCAGGTATCACTAGTGGCTCCATAGCTGAACGAACACAATTTGTGGCCTATCTCATCTACTCCACTGTTCTAACTGGCTTCATCTACCCTATAGTCTCCCATTGGTTTTGGTCTGCTGATGGGTGGGCTAGCCCAACACGACCCAACAATCTCCTATTCAACTCAGGTGCAATCGACTTTGCTGGGTCTGGTGTGGTCCACATGGTTGGTGGTGTAGCTGGTCTCTGGGGATCTTTAATCGAAGGCCCAAGAATCGGTCGATTTGATCGATCCGGACGATCTGTTGCCCTTCGCGGCCACAGTGCATCACTCGTAGTCCTAGGCTCCTTCCTCCTTTGGTTCGGCTGGTATGGGTTCAACCCCGGTTCATTCCTAACAATTTCCAAATCCTACAATGATGGTCGTCCTTACTATGGCCAATGGAGCGCCATAGGTCGAACTGGAGTCACCACAACACTAGCGGGATGCACAGCTGCCTTAACAACCCTTTTCGCAAAGCGTCTCTTAGTCGGCCATTGGAACGTAATCGACGTGTGCAACGGCCTATTAGGGGGGTTCGCCGCCATCACATCTGGTTGTGCTGTGGTGGAGCCATGGGCAGCAGTGATATGTGGTTTCGTAGCATCTTGGGTGTTAATTGGGTTCAACAAGCTAGCGGAGAGGCTGAGCTTCGACGACCCATTAGAAGCGGCACAATTGCATGGCGGATGTGGGGCATGGGGTTTAATATTCACAGGACTATTTGCGACAAAGAAATATGTCGGGGAGGTATATCAACTCGGGCGGCCTTACGGATTGCTGATGGGCGGGGGATGGAAGCTATTGGCAGCACAAGTGGTAGAAATTGTAGCGATATTTGGGTGGGTGTCTTTGACAATGGGAGGGTTGTTTTATGGGTTGATGAAAGGGAAACTATTGAGAATATCAAGGGAGGATGAAATGGCGGGGATGGATTTAACGAGACATGGGGGATTTGCTTATGTATATAATGATGAAGAAGATTTTTCAGAGAAGGCGTCTGGGTTTGTGATGAGGAGAATTGAGCCTGCTGATGCTAGTTCTCCTAAGGATCATACTTCTTCTGGGATAGAGGATGTTTAA 1650 49.58 MGEIDTPIRLNQTIHTHNPSINLNQTFTHTHTFSKALTMATLSCQPSDLIPLLGSSATTNSTAVAEFLCSRFTTIASTFSSTTYAVDNNYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFDLSSVPNPSTDYSFFLYQWAFAIATAGITSGSIAERTQFVAYLIYSTVLTGFIYPIVSHWFWSADGWASPTRPNNLLFNSGAIDFAGSGVVHMVGGVAGLWGSLIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFAKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASWVLIGFNKLAERLSFDDPLEAAQLHGGCGAWGLIFTGLFATKKYVGEVYQLGRPYGLLMGGGWKLLAAQVVEIVAIFGWVSLTMGGLFYGLMKGKLLRISREDEMAGMDLTRHGGFAYVYNDEEDFSEKASGFVMRRIEPADASSPKDHTSSGIEDV* 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6708360 6711134 - CsaV3_2G010040.1 Csa02g00788 518845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00788 549 ProSitePatterns Ammonium transporters signature. 242 267 IPR018047 GO:0008519|GO:0016020|GO:0072488
Csa02g00788 549 SUPERFAMILY Ammonium transporter 84 489 - -
Csa02g00788 549 PANTHER AMMONIUM TRANSPORTER 43 539 - -
Csa02g00788 549 Gene3D Ammonium transporter AmtB like domains 68 528 IPR029020 -
Csa02g00788 549 TIGRFAM amt: ammonium transporter 87 510 IPR001905 GO:0008519|GO:0016020|GO:0072488
Csa02g00788 549 Pfam Ammonium Transporter Family 91 510 IPR024041 GO:0008519|GO:0016020|GO:0072488
Csa02g00788 549 MobiDBLite consensus disorder prediction 530 549 - -
Csa02g00788 549 PANTHER AMMONIUM TRANSPORTER 43 539 - -
Csa02g00788 549 MobiDBLite consensus disorder prediction 533 549 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00788 Csa-Chr2:6708360 Csa02g01000 Csa-Chr2:9652408 0 dispersed
Csa02g00788 Csa-Chr2:6708360 Csa02g00790 Csa-Chr2:6740629 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00788 K03320 K07573 csv:101217871 1004.2