Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00790 ATGGCCACCCTTTCTTGCCAATCTTCCGATTTAGTAACCCTTCTCGGGTCTTCCACCACCGCGAACAACACAGCCATAGCGGAGTTTCTATGCTCCAGATTCACCACCATAGCCACCACTTTCAGCACCACCACCTACGCGGTCGACAACACCTACCTCCTCTTCTCCGCCTACCTTGTCTTCGCCATGCAGCTCGGCTTCGCCATGCTCTGCGCTGGCTCCGTCCGTGCCAAAAACACTATGAACATCATGCTCACTAATGTCCTCGACGCAGCTGCCGGTGGTCTCTCCTACTACCTCTTTGGGTTCGCCTTTGCCTTCGGTGCCCCCTCCAACTCCTTCATCGGTCGCCACTTTTTTGGGCTCTCCGATTTCCCCAACCCCACTACTGATTATAGCTTCTTTCTCTATCAATGGGCCTTTGCTATTGCTGCTGCAGGCATCACTAGTGGTTCCATTGCTGAGCGAACTCAGTTCGTGGCTTATCTCATCTACTCCAGCATTCTTACTGGTTTCGTCTATCCCATTGTGTCTCATTGGTTCTGGTCTTCCGACGGGTGGGCCAGCCCAACTCGCCCTAGTAATCTTCTATTCAATTCAGGAGCAATCGACTTTGCCGGATCAGGTGTTGTCCACATGGTTGGTGGTATAGCAGGCCTCTGGGGAGCTCTAATTGAAGGCCCTCGTATTGGCCGGTTCGATCGGTCTGGCCGATCTGTAGCCCTTCGTGGCCATAGTGCCTCTTTAGTTGTTCTTGGCTCATTTCTCCTCTGGTTCGGCTGGTACGGGTTCAACCCAGGTTCATTTCTAACAATCTCCAGGTCATACAATGACGGTCGCCCTTACTACGGTCAATGGAGCGCCATAGGTCGAACTGGAGTCACCACAACACTAGCTGGATGCACAGCTGCATTAACCACGCTCTTTACAAAACGCTTATTAGTTGGCCATTGGAATGTAATTGATGTCTGTAATGGTTTATTAGGAGGATTCGCGGCCATCACGTCTGGTTGTGCCGTTGTCGAGCCATGGGCTGCGGTGATATGTGGATTCGTAGCATCCTGGGTTTTAATTAGCTTCAACAAGTTAGCTGAAAAGGTCAACTACGATGATCCATTAGAGGCAGCGCAACTGCACGGCGGGTGTGGCGCGTGGGGTCTTCTATTTACTGGATTATTTGCTAGAAAGGAGTATGTAGCAGAGGTTTACCAGGCTGGGCGTCCATATGGATTGTTGATGGGCGGTGGAGGACGACTTCTGGCTGCGCAGTTGATCGAGATACTGGCCATAATTGGGTGGGTTTCTGTAACGATGGGGCCATTATTTTATGCGTTGAAGAATATGAAATTGTTAAGGATATCAAGGGAAGATGAGATGGCTGGGATGGATTTAACAAGACATGGAGGATTCGCTTATGTCTATAACGATGAGGATGATCTCTCTGGGAAGCCATCTGGATTTATGATGAGGAAAATTGAGCCTGCTAATGAGACTCCTCCCCAAGAACATTTTCCTTCAGGGATGGCAGCTGTTTGA 1536 50.13 MATLSCQSSDLVTLLGSSTTANNTAIAEFLCSRFTTIATTFSTTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFGLSDFPNPTTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSILTGFVYPIVSHWFWSSDGWASPTRPSNLLFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISRSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFTKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASWVLISFNKLAEKVNYDDPLEAAQLHGGCGAWGLLFTGLFARKEYVAEVYQAGRPYGLLMGGGGRLLAAQLIEILAIIGWVSVTMGPLFYALKNMKLLRISREDEMAGMDLTRHGGFAYVYNDEDDLSGKPSGFMMRKIEPANETPPQEHFPSGMAAV* 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6740629 6743182 - CsaV3_2G010060.1 Csa02g00790 518847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00790 511 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519|GO:0016020|GO:0072488
Csa02g00790 511 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Csa02g00790 511 TIGRFAM amt: ammonium transporter 49 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Csa02g00790 511 PANTHER AMMONIUM TRANSPORTER 3 502 - -
Csa02g00790 511 PANTHER AMMONIUM TRANSPORTER 3 502 - -
Csa02g00790 511 SUPERFAMILY Ammonium transporter 46 453 - -
Csa02g00790 511 Gene3D Ammonium transporter AmtB like domains 30 485 IPR029020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00790 Csa-Chr2:6740629 Csa02g01000 Csa-Chr2:9652408 0 dispersed
Csa02g00788 Csa-Chr2:6708360 Csa02g00790 Csa-Chr2:6740629 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00790 K03320 K07573 csv:101222356 979.933