Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00815 ATGGAATCGGAGGATGAGCTCGACATGCACGATGCTCATGACGACGACGATGACTCTGTTGACAATGAGGAGGATTTCTACAGTGGCGGCGACGACGATGCTGCTGGAATTGATAGCGACGATGCTGATGTCGGTGATTATGAGTTTGTTGATAATGATTCCGATGATTCCGACGACATGGTCTCCTATCGCCACCAGCAAAACTATATAATCTTGGCCGAGGCAGATATTCAACAATGTCAGGAGGAAGACATCACAAGAGTATCCACTGTCCTTTCTATTTCAAAAGTAGCCGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTTCGTAGATCTGTTGGCTTACTACAGAAACCAGTTTTGCGACATTCAAATGAACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATCCACTTGATAAGATCCAGTCAGCTGCTTGTGGCCATCCATTTTGCAATGCTTGTTGGACAGGTTACATTAGCACATCTATCAATGATGGTCCAGGATGTCTAATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTCGGTCAAGATATGATAAATTTATTAGTTTCTGATGACGAAAAAAAGAAGTACTTTCGTTATTTTGTTCGATCATATGTTGAGGACAATCGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATATTGAAGAATAGTGCTGAGTCGGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCGAAATGTAAACGACCAATTGAGAAAAATCAAGGATGCATGCATCTTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTCTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCAGAAAAGCGCAGAGAGATGGCAAAGAATTCTCTGGAGAGGTATACACATTATTATGAAAGATGGGCTACCAACCAATCGTCCAGGCAGAAGGCACTTGCAGATCTCCATCAAATGCAGACCGTGCATCTGGAAAAGTTAAGTGACATCCAGTGCCAACCTCAATCACAGCTAAAATTCATAAGCGAAGCATGGCTACAGATTGTTGAGTGTAGGCGAGTTCTTAAATGGACATATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGCTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAAATGCTGCTGATGGCCCTTCAAAAGATTTTAACGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGAAATTACTTCGAGAATTTAGTTCGTGCACTTGAGAACGGTCTGTCGGATGTTGATTCCCTCGGTACCTGCAGCAAAACATCAAGCTCAAAGAGTACCGGTGGCTGTAGGAGTAAAGGTGGAAAAGGCAAGATGAGTGCATTCAGAGGTCATTCAATTCTGCACTTGCACCATTGGACCGAGGCATGGGAGAATTTGAGAAACTAA 1740 43.39 MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIQQCQEEDITRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLQKPVLRHSNELELPCGICFEIYPLDKIQSAACGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLVSDDEKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHLTCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPQSQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSLGTCSKTSSSKSTGGCRSKGGKGKMSAFRGHSILHLHHWTEAWENLRN* 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7192051 7223706 - CsaV3_2G010310.1 Csa02g00815 518872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00815 579 ProSiteProfiles Zinc finger RING-type profile. 146 190 IPR001841 -
Csa02g00815 579 Pfam Ariadne domain 364 527 IPR045840 -
Csa02g00815 579 Pfam IBR domain, a half RING-finger domain 215 277 IPR002867 -
Csa02g00815 579 Pfam IBR domain, a half RING-finger domain 294 342 IPR002867 -
Csa02g00815 579 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 29 540 IPR031127 GO:0004842|GO:0016567
Csa02g00815 579 CDD RING-HC_RBR_TRIAD1_like 146 196 - -
Csa02g00815 579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 228 IPR013083 -
Csa02g00815 579 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 29 540 - -
Csa02g00815 579 MobiDBLite consensus disorder prediction 1 56 - -
Csa02g00815 579 Gene3D - 273 529 - -
Csa02g00815 579 SUPERFAMILY RING/U-box 216 284 - -
Csa02g00815 579 SMART ibrneu5 281 351 IPR002867 -
Csa02g00815 579 SMART ibrneu5 215 277 IPR002867 -
Csa02g00815 579 MobiDBLite consensus disorder prediction 1 58 - -
Csa02g00815 579 SUPERFAMILY RING/U-box 296 344 - -
Csa02g00815 579 MobiDBLite consensus disorder prediction 534 554 - -
Csa02g00815 579 ProSiteProfiles TRIAD supradomain profile. 142 355 IPR044066 -
Csa02g00815 579 SUPERFAMILY RING/U-box 143 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00815 Csa-Chr2:7192051 Csa06g00382 Csa-Chr6:3180847 0 dispersed
Csa02g00815 Csa-Chr2:7192051 Csa06g01664 Csa-Chr6:14618486 2.39E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00815 K11968 - csv:101218052 1097.03