Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00815 ATGGAATCGGAGGATGAGCTCGACATGCACGATGCTCATGACGACGACGATGACTCTGTTGACAATGAGGAGGATTTCTACAGTGGCGGCGACGACGATGCTGCTGGAATTGATAGCGACGATGCTGATGTCGGTGATTATGAGTTTGTTGATAATGATTCCGATGATTCCGACGACATGGTCTCCTATCGCCACCAGCAAAACTATATAATCTTGGCCGAGGCAGATATTCAACAATGTCAGGAGGAAGACATCACAAGAGTATCCACTGTCCTTTCTATTTCAAAAGTAGCCGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTTCGTAGATCTGTTGGCTTACTACAGAAACCAGTTTTGCGACATTCAAATGAACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATCCACTTGATAAGATCCAGTCAGCTGCTTGTGGCCATCCATTTTGCAATGCTTGTTGGACAGGTTACATTAGCACATCTATCAATGATGGTCCAGGATGTCTAATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTCGGTCAAGATATGATAAATTTATTAGTTTCTGATGACGAAAAAAAGAAGTACTTTCGTTATTTTGTTCGATCATATGTTGAGGACAATCGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATATTGAAGAATAGTGCTGAGTCGGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCGAAATGTAAACGACCAATTGAGAAAAATCAAGGATGCATGCATCTTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTCTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCAGAAAAGCGCAGAGAGATGGCAAAGAATTCTCTGGAGAGGTATACACATTATTATGAAAGATGGGCTACCAACCAATCGTCCAGGCAGAAGGCACTTGCAGATCTCCATCAAATGCAGACCGTGCATCTGGAAAAGTTAAGTGACATCCAGTGCCAACCTCAATCACAGCTAAAATTCATAAGCGAAGCATGGCTACAGATTGTTGAGTGTAGGCGAGTTCTTAAATGGACATATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGCTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAAATGCTGCTGATGGCCCTTCAAAAGATTTTAACGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGAAATTACTTCGAGAATTTAGTTCGTGCACTTGAGAACGGTCTGTCGGATGTTGATTCCCTCGGTACCTGCAGCAAAACATCAAGCTCAAAGAGTACCGGTGGCTGTAGGAGTAAAGGTGGAAAAGGCAAGATGAGTGCATTCAGAGGTCATTCAATTCTGCACTTGCACCATTGGACCGAGGCATGGGAGAATTTGAGAAACTAA 1740 43.39 MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIQQCQEEDITRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLQKPVLRHSNELELPCGICFEIYPLDKIQSAACGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLVSDDEKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHLTCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPQSQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSLGTCSKTSSSKSTGGCRSKGGKGKMSAFRGHSILHLHHWTEAWENLRN* 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7192051 7223706 - CsaV3_2G010310.1 Csa02g00815 518872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00815 579 ProSiteProfiles Zinc finger RING-type profile. 146 190 IPR001841 -
Csa02g00815 579 Pfam Ariadne domain 364 527 IPR045840 -
Csa02g00815 579 Pfam IBR domain, a half RING-finger domain 215 277 IPR002867 -
Csa02g00815 579 Pfam IBR domain, a half RING-finger domain 294 342 IPR002867 -
Csa02g00815 579 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 29 540 IPR031127 GO:0004842|GO:0016567
Csa02g00815 579 CDD RING-HC_RBR_TRIAD1_like 146 196 - -
Csa02g00815 579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 228 IPR013083 -
Csa02g00815 579 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 29 540 - -
Csa02g00815 579 MobiDBLite consensus disorder prediction 1 56 - -
Csa02g00815 579 Gene3D - 273 529 - -
Csa02g00815 579 SUPERFAMILY RING/U-box 216 284 - -
Csa02g00815 579 SMART ibrneu5 281 351 IPR002867 -
Csa02g00815 579 SMART ibrneu5 215 277 IPR002867 -
Csa02g00815 579 MobiDBLite consensus disorder prediction 1 58 - -
Csa02g00815 579 SUPERFAMILY RING/U-box 296 344 - -
Csa02g00815 579 MobiDBLite consensus disorder prediction 534 554 - -
Csa02g00815 579 ProSiteProfiles TRIAD supradomain profile. 142 355 IPR044066 -
Csa02g00815 579 SUPERFAMILY RING/U-box 143 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00815 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101218052 1097.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00815 Csa-Chr2:7192051 Csa06g00382 Csa-Chr6:3180847 0 dispersed
Csa02g00815 Csa-Chr2:7192051 Csa06g01664 Csa-Chr6:14618486 2.39E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g01229 . 164 590 ARIADNE family AT4G34370 72.5 5.7e-184 640.6
Csa02g01229 . 58 542 ARIADNE family AT2G16090 77.4 1.5e-225 778.9
Csa02g01229 . 28 543 ARIADNE family AT3G27710 61.9 9.9e-186 646.7
Csa02g01229 . 44 522 ARIADNE family AT3G27720 54.5 5.1e-144 508.1
Csa02g00815 . 1 542 ARIADNE family AT1G05890 63.2 8.3e-218 753.4
Csa06g00382 . 61 529 ARIADNE family AT1G05890 72.7 5.6e-214 740.7
Csa02g00815 . 20 546 ARIADNE family AT1G65430 76.7 3.0e-249 857.8
Csa06g00382 . 16 588 ARIADNE family AT1G65430 67.5 8.2e-239 823.2
Csa02g00815 . 9 460 ARIADNE family AT2G31780 53.4 1.5e-147 519.6
Csa06g00382 . 57 454 ARIADNE family AT2G31780 57.3 4.7e-141 498.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00815 Csa_Chr02 FPKM 16.832092 14.576987 16.61146 15.2602 11.679792 11.621658 14.166534 12.088033 11.333829 13.785935