Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00816 ATGGGTTCAATCAATTGGCTTGGCTTCTCTCTTTCCCCTCAACACCAACCCTCCGATCACGCTCACGCTGCCGCCGCTACCGCCCCCTTCACCTCCGATCAAATCTCTCCCTCCGACGTCTCCGCCGTCTGCTTTGACAACCTTCCTTCTTCCTATGCTGTTTATGAACACTCTCAAGATTGGAATAATATGAAGGGTTTAGGGTCGACACAAAGTTCAGATTTTTCTGCTTTAATCGAAAGCCAACACCAACCAAAGCTTGAAAATTTCCTAGGCCACCACTCTTTCACTGACCACGACCACGACCACGCCACCGCCGCCGTCTACACCAATGCCTCCGCCAACTACATCTTCCAAAATTCTTCTTTGGACCTTCCATCGGAGGCTGCCGGCTGTGGCGGTGGAAGACCCAGCGCCGGTAACGGAAACGCCAACAATACTACCTCTATTGGTTTGTCGATGATTAAGACGTGGTTGAGGAATCAACCAGCGCCGCCTCAAGTGGTGGCCAAAGGCGGCGGAGATCACGACGGTAGTGCAGTTGGAATAAGTAATCATCTCACGACCGCACATACTTTATCACTGTCGATGAACACCGGTCCCCCACCGCCATCCCAGTCTTCGTCCGGCTCGGCGGCTCTACCACTTCTCACGGCCAGCGGCGGTGAAAGCTCCTCCTCCGATAACAAACAAGGGAAATCATCAGGTGCCTCGATCGACGCTGAAAATGGTGCCGTTGAAGCTGCCCCGAGAAAATCTGTCGATACATTTGGACAAAGAACTTCCATCTACCGCGGTGTAACCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTTTGGGACAATAGTTGTAGACGAGAAGGACAGACTAGAAAAGGAAGACAAGTCTATTTGGGAGGTTATGACAAAGAAGAAAAGGCTGCAAGAGCTTACGATTTAGCAGCACTTAAATATTGGGGTACCACAACCACAACAAATTTTCCAATTAGTGATTACGAAAAAGAGTTGGAAGACATGAAGCACATGACCCGGCAAGAGTTTGTTGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGAGGAGCTTCCATTTACCGTGGAGTTACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCGGGGAATAAAGATCTCTACCTGGGAACTTTCGGTACGCAAGAAGAAGCAGCGGAAGCATATGACATAGCAGCTATAAAGTTTAGAGGATTAAATGCGGTGACCAACTTTGATATGAGCCGTTACGATGTGAAAGCCATTCTTGAAAGTAACACATTACCCATCGGCGGGGCTGCCAAGCGCTTAAAGGACATTCACCATTCTGACATACCTCTCGACCCCCAAAGAGCAGAAGACAACATAACTTCACACCTCTCTGATGGAATAATAAATATTACATCCACCACGACTCCTTATAGTGGCGGTGGATGGCCCACTATCGCCTTCCACCATCACCATCCTTACGCTTTCCACTACCCCTATGCGACTCCGCAACAACGAATGTGGTGCAAACAAGAACAGGATGCTACTGCTATCGCCGCCGACAACTTTTTCCCACATGGTGGGGCTATGGACTCAATGGACCATAGCTCGGGGTCTTACAGCAGTGCCAATGGAGATGGGTACAATGGAAACTTCTTGATTCCGATGGGGGCGGAAGGAAGCAGCAGCAACAATGGGGGATTAGGAGACATTGGAGAAGTGAATTTATTTGGTGGTTGTTCTAATGTGGATGATCCATTCCATGCAACAAGAACGTCCAATTTGTATAATTATCACAACTCCTCTCATCAGCTGCAACCGCCACCTCCGCCGTCGGGGCTGCAAGGCTCTAACTGCAACAACTGGCTTCCTCCGGCAAGGTCGGTTTGTCAGGGGGGAGCTCCCCCACCTTTCACCATTTGGAATGACACTTAG 1953 49.51 MGSINWLGFSLSPQHQPSDHAHAAAATAPFTSDQISPSDVSAVCFDNLPSSYAVYEHSQDWNNMKGLGSTQSSDFSALIESQHQPKLENFLGHHSFTDHDHDHATAAVYTNASANYIFQNSSLDLPSEAAGCGGGRPSAGNGNANNTTSIGLSMIKTWLRNQPAPPQVVAKGGGDHDGSAVGISNHLTTAHTLSLSMNTGPPPPSQSSSGSAALPLLTASGGESSSSDNKQGKSSGASIDAENGAVEAAPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIHHSDIPLDPQRAEDNITSHLSDGIINITSTTTPYSGGGWPTIAFHHHHPYAFHYPYATPQQRMWCKQEQDATAIAADNFFPHGGAMDSMDHSSGSYSSANGDGYNGNFLIPMGAEGSSSNNGGLGDIGEVNLFGGCSNVDDPFHATRTSNLYNYHNSSHQLQPPPPPSGLQGSNCNNWLPPARSVCQGGAPPPFTIWNDT* 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7285623 7289916 + CsaV3_2G010320.1 Csa02g00816 518873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00816 650 SUPERFAMILY DNA-binding domain 364 425 IPR016177 GO:0003677
Csa02g00816 650 Gene3D AP2/ERF domain 365 425 IPR036955 GO:0003700|GO:0006355
Csa02g00816 650 Gene3D AP2/ERF domain 263 331 IPR036955 GO:0003700|GO:0006355
Csa02g00816 650 CDD AP2 364 425 IPR001471 GO:0003700|GO:0006355
Csa02g00816 650 MobiDBLite consensus disorder prediction 193 253 - -
Csa02g00816 650 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 5 538 - -
Csa02g00816 650 MobiDBLite consensus disorder prediction 193 238 - -
Csa02g00816 650 ProSiteProfiles AP2/ERF domain profile. 263 329 IPR001471 GO:0003700|GO:0006355
Csa02g00816 650 Pfam AP2 domain 365 415 IPR001471 GO:0003700|GO:0006355
Csa02g00816 650 Pfam AP2 domain 263 321 IPR001471 GO:0003700|GO:0006355
Csa02g00816 650 SUPERFAMILY DNA-binding domain 262 331 IPR016177 GO:0003677
Csa02g00816 650 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 538 - -
Csa02g00816 650 PRINTS Ethylene responsive element binding protein signature 264 275 IPR001471 GO:0003700|GO:0006355
Csa02g00816 650 PRINTS Ethylene responsive element binding protein signature 405 425 IPR001471 GO:0003700|GO:0006355
Csa02g00816 650 CDD AP2 262 331 IPR001471 GO:0003700|GO:0006355
Csa02g00816 650 ProSiteProfiles AP2/ERF domain profile. 365 423 IPR001471 GO:0003700|GO:0006355
Csa02g00816 650 SMART rav1_2 263 335 IPR001471 GO:0003700|GO:0006355
Csa02g00816 650 SMART rav1_2 365 429 IPR001471 GO:0003700|GO:0006355
Csa02g00816 650 MobiDBLite consensus disorder prediction 604 626 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02157 Csa-Chr1:18716067 Csa02g00816 Csa-Chr2:7285623 4.21E-12 dispersed
Csa02g00816 Csa-Chr2:7285623 Csa04g01404 Csa-Chr4:14070320 1.97E-132 dispersed
Csa07g01544 Csa-Chr7:15810584 Csa02g00816 Csa-Chr2:7285623 7.40E-07 dispersed
Csa02g00816 Csa-Chr2:7285623 Csa06g03048 Csa-Chr6:26200005 7.94E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30891 PF00847 AP2 1.50E-12 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00816 K09285 - csv:101219473 1269.6