Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g00816 | ATGGGTTCAATCAATTGGCTTGGCTTCTCTCTTTCCCCTCAACACCAACCCTCCGATCACGCTCACGCTGCCGCCGCTACCGCCCCCTTCACCTCCGATCAAATCTCTCCCTCCGACGTCTCCGCCGTCTGCTTTGACAACCTTCCTTCTTCCTATGCTGTTTATGAACACTCTCAAGATTGGAATAATATGAAGGGTTTAGGGTCGACACAAAGTTCAGATTTTTCTGCTTTAATCGAAAGCCAACACCAACCAAAGCTTGAAAATTTCCTAGGCCACCACTCTTTCACTGACCACGACCACGACCACGCCACCGCCGCCGTCTACACCAATGCCTCCGCCAACTACATCTTCCAAAATTCTTCTTTGGACCTTCCATCGGAGGCTGCCGGCTGTGGCGGTGGAAGACCCAGCGCCGGTAACGGAAACGCCAACAATACTACCTCTATTGGTTTGTCGATGATTAAGACGTGGTTGAGGAATCAACCAGCGCCGCCTCAAGTGGTGGCCAAAGGCGGCGGAGATCACGACGGTAGTGCAGTTGGAATAAGTAATCATCTCACGACCGCACATACTTTATCACTGTCGATGAACACCGGTCCCCCACCGCCATCCCAGTCTTCGTCCGGCTCGGCGGCTCTACCACTTCTCACGGCCAGCGGCGGTGAAAGCTCCTCCTCCGATAACAAACAAGGGAAATCATCAGGTGCCTCGATCGACGCTGAAAATGGTGCCGTTGAAGCTGCCCCGAGAAAATCTGTCGATACATTTGGACAAAGAACTTCCATCTACCGCGGTGTAACCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTTTGGGACAATAGTTGTAGACGAGAAGGACAGACTAGAAAAGGAAGACAAGTCTATTTGGGAGGTTATGACAAAGAAGAAAAGGCTGCAAGAGCTTACGATTTAGCAGCACTTAAATATTGGGGTACCACAACCACAACAAATTTTCCAATTAGTGATTACGAAAAAGAGTTGGAAGACATGAAGCACATGACCCGGCAAGAGTTTGTTGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGAGGAGCTTCCATTTACCGTGGAGTTACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCGGGGAATAAAGATCTCTACCTGGGAACTTTCGGTACGCAAGAAGAAGCAGCGGAAGCATATGACATAGCAGCTATAAAGTTTAGAGGATTAAATGCGGTGACCAACTTTGATATGAGCCGTTACGATGTGAAAGCCATTCTTGAAAGTAACACATTACCCATCGGCGGGGCTGCCAAGCGCTTAAAGGACATTCACCATTCTGACATACCTCTCGACCCCCAAAGAGCAGAAGACAACATAACTTCACACCTCTCTGATGGAATAATAAATATTACATCCACCACGACTCCTTATAGTGGCGGTGGATGGCCCACTATCGCCTTCCACCATCACCATCCTTACGCTTTCCACTACCCCTATGCGACTCCGCAACAACGAATGTGGTGCAAACAAGAACAGGATGCTACTGCTATCGCCGCCGACAACTTTTTCCCACATGGTGGGGCTATGGACTCAATGGACCATAGCTCGGGGTCTTACAGCAGTGCCAATGGAGATGGGTACAATGGAAACTTCTTGATTCCGATGGGGGCGGAAGGAAGCAGCAGCAACAATGGGGGATTAGGAGACATTGGAGAAGTGAATTTATTTGGTGGTTGTTCTAATGTGGATGATCCATTCCATGCAACAAGAACGTCCAATTTGTATAATTATCACAACTCCTCTCATCAGCTGCAACCGCCACCTCCGCCGTCGGGGCTGCAAGGCTCTAACTGCAACAACTGGCTTCCTCCGGCAAGGTCGGTTTGTCAGGGGGGAGCTCCCCCACCTTTCACCATTTGGAATGACACTTAG | 1953 | 49.51 | MGSINWLGFSLSPQHQPSDHAHAAAATAPFTSDQISPSDVSAVCFDNLPSSYAVYEHSQDWNNMKGLGSTQSSDFSALIESQHQPKLENFLGHHSFTDHDHDHATAAVYTNASANYIFQNSSLDLPSEAAGCGGGRPSAGNGNANNTTSIGLSMIKTWLRNQPAPPQVVAKGGGDHDGSAVGISNHLTTAHTLSLSMNTGPPPPSQSSSGSAALPLLTASGGESSSSDNKQGKSSGASIDAENGAVEAAPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIHHSDIPLDPQRAEDNITSHLSDGIINITSTTTPYSGGGWPTIAFHHHHPYAFHYPYATPQQRMWCKQEQDATAIAADNFFPHGGAMDSMDHSSGSYSSANGDGYNGNFLIPMGAEGSSSNNGGLGDIGEVNLFGGCSNVDDPFHATRTSNLYNYHNSSHQLQPPPPPSGLQGSNCNNWLPPARSVCQGGAPPPFTIWNDT* | 651 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 7285623 | 7289916 | + | CsaV3_2G010320.1 | Csa02g00816 | 518873 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g00816 | 650 | SUPERFAMILY | DNA-binding domain | 364 | 425 | IPR016177 | GO:0003677 | |
Csa02g00816 | 650 | Gene3D | AP2/ERF domain | 365 | 425 | IPR036955 | GO:0003700|GO:0006355 | |
Csa02g00816 | 650 | Gene3D | AP2/ERF domain | 263 | 331 | IPR036955 | GO:0003700|GO:0006355 | |
Csa02g00816 | 650 | CDD | AP2 | 364 | 425 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g00816 | 650 | MobiDBLite | consensus disorder prediction | 193 | 253 | - | - | |
Csa02g00816 | 650 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM | 5 | 538 | - | - | |
Csa02g00816 | 650 | MobiDBLite | consensus disorder prediction | 193 | 238 | - | - | |
Csa02g00816 | 650 | ProSiteProfiles | AP2/ERF domain profile. | 263 | 329 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g00816 | 650 | Pfam | AP2 domain | 365 | 415 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g00816 | 650 | Pfam | AP2 domain | 263 | 321 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g00816 | 650 | SUPERFAMILY | DNA-binding domain | 262 | 331 | IPR016177 | GO:0003677 | |
Csa02g00816 | 650 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 5 | 538 | - | - | |
Csa02g00816 | 650 | PRINTS | Ethylene responsive element binding protein signature | 264 | 275 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g00816 | 650 | PRINTS | Ethylene responsive element binding protein signature | 405 | 425 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g00816 | 650 | CDD | AP2 | 262 | 331 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g00816 | 650 | ProSiteProfiles | AP2/ERF domain profile. | 365 | 423 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g00816 | 650 | SMART | rav1_2 | 263 | 335 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g00816 | 650 | SMART | rav1_2 | 365 | 429 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g00816 | 650 | MobiDBLite | consensus disorder prediction | 604 | 626 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02157 | Csa-Chr1:18716067 | Csa02g00816 | Csa-Chr2:7285623 | 4.21E-12 | dispersed | |
Csa02g00816 | Csa-Chr2:7285623 | Csa04g01404 | Csa-Chr4:14070320 | 1.97E-132 | dispersed | |
Csa07g01544 | Csa-Chr7:15810584 | Csa02g00816 | Csa-Chr2:7285623 | 7.40E-07 | dispersed | |
Csa02g00816 | Csa-Chr2:7285623 | Csa06g03048 | Csa-Chr6:26200005 | 7.94E-120 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30891 | PF00847 | AP2 | 1.50E-12 | CL0081 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g00816 | K09285 | - | csv:101219473 | 1269.6 |