Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00838 ATGGGGTCCTGCTTATCTGCGGAGAGCAGGAGCCCCATTCCTGGTTCCCCAACTTCTCCGGCTAAGCATCATCGGAGTAAGAACAGTTCCAAGAGGCGAAATTGTTCGAGAAATTCCTCATTTGGGGATCTCCCACTTCATCGGATCCCTGGTAGGCTCTTCGCTAATGGCTTCACTGATATGGCGTCTCTGTTCACGCAGCAGGGCAAGAAAGGAACCAATCAGGATGCCATGATTGTTTGGGAGAATTTTGGCTCTAGGACCGATACGATCTTCTGTGGGGTTTTTGATGGCCATGGTCCCTATGGTCATATGGTTGCGAAGAAAGTGAGGGATTCTCTTCCTCTGAGGTTGAGTGCACATTGGGAGGTTAACTTGACCACTGATGATGTTCATAGAGAGATCAGTCTTAATAATACAGGAAGTATGAACTCGGATGAAGCTACCTCGTTTTTATCTGCTAACGAAGAGTTTAGGGCCTCCATTGATGTTGATGGAACAGAAAAGCAACCTGAAATTTTCCATACTTTGAAGGAGTCTTTTCTTAAGGCTTTTAGAGTTATGGATTGGGAACTCAGAATGCACCAAACTATAGACAGCTTCTGTAGTGGTACTACAGCAGTGACTATTGTTAAACAGGGTCAAGATCTTGTCATTGGAAATGTTGGGGACTCCCGAGCTGTTTTGGGTATGAGAGATAAAGATGACTCTCTTGTTCCCATTCAATTGACTGTGGATCTGAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATCCGCAAGTGTAGAGGTCGTGTCTTTGCTCTTCAAGATGAACCTGATGTAGCTCGAGTTTGGCTTCCAAACAGCAACTCTCCTGGACTCGCCATGGCACGGGCATTTGGAGATTTCTGCCTCAAAGACTTTGGTCTTATCTCTGTACCTGAAATATCATATAGACGGCTCACTGAAAAAGACGAATTCGTTGTTCTGGCTACAGATGGCATATGGGATGTGCTGTCAAACAAAGAGGTTGTAGATATTGTTGCATCAGCTTCAAAACGCTCTTCCGCAGCTCGCACTCTAGTAGAAACTGCAGTTAAAGCATGGAAACATAAATACCCAACTTCCAAGATTGATGACTGTGCTGTTGTTTGCCTCTTCCTTGACTCAAACTCTGGCAACCTATCATCTGCTTCCAATACCAAACCAGAAGAGCAACAAATTTTAGCAGATCATCTCAGCACTCCAGTCGAGAATGAAGATTTCTCTGGCCCAAATGGTCTGAATCGTTCAGGAACTGTCCGAACAAGCAAGGAAATTTTGCAGGATGGAAGCGAAGAAGATGAAATGAAGGAGGAAGAACATTCAGAAACGGGAATAGAATGGTCTGCCCTGGAAGGAGTGTCGCGCGTAAACACTTTGGTAACCCTGCCGAGATTCAATCCTGATAAAGAAGATAAGAAAGGCCGGAAGTGA 1455 45.02 MGSCLSAESRSPIPGSPTSPAKHHRSKNSSKRRNCSRNSSFGDLPLHRIPGRLFANGFTDMASLFTQQGKKGTNQDAMIVWENFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSAHWEVNLTTDDVHREISLNNTGSMNSDEATSFLSANEEFRASIDVDGTEKQPEIFHTLKESFLKAFRVMDWELRMHQTIDSFCSGTTAVTIVKQGQDLVIGNVGDSRAVLGMRDKDDSLVPIQLTVDLKPNLPAEAERIRKCRGRVFALQDEPDVARVWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDEFVVLATDGIWDVLSNKEVVDIVASASKRSSAARTLVETAVKAWKHKYPTSKIDDCAVVCLFLDSNSGNLSSASNTKPEEQQILADHLSTPVENEDFSGPNGLNRSGTVRTSKEILQDGSEEDEMKEEEHSETGIEWSALEGVSRVNTLVTLPRFNPDKEDKKGRK* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7649005 7653515 + CsaV3_2G010540.1 Csa02g00838 518895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00838 484 CDD PP2Cc 61 381 IPR001932 -
Csa02g00838 484 MobiDBLite consensus disorder prediction 410 452 - -
Csa02g00838 484 Gene3D - 59 383 IPR036457 -
Csa02g00838 484 SMART PP2C_4 52 379 IPR001932 -
Csa02g00838 484 MobiDBLite consensus disorder prediction 1 16 - -
Csa02g00838 484 ProSiteProfiles PPM-type phosphatase domain profile. 61 381 IPR001932 -
Csa02g00838 484 MobiDBLite consensus disorder prediction 1 43 - -
Csa02g00838 484 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 468 - -
Csa02g00838 484 PANTHER ALPHABET, ISOFORM E-RELATED 1 468 - -
Csa02g00838 484 MobiDBLite consensus disorder prediction 412 432 - -
Csa02g00838 484 SUPERFAMILY PP2C-like 61 382 IPR036457 -
Csa02g00838 484 Pfam Protein phosphatase 2C 162 360 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00838 Csa-Chr2:7649005 Csa06g00378 Csa-Chr6:3142443 1.14E-169 dispersed
Csa02g00838 Csa-Chr2:7649005 Csa02g00474 Csa-Chr2:3366498 5.42E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00838 - - csv:101222150 942.184